1N1L - Header Asymmetric Unit

HEADER VIRAL PROTEIN 18-OCT-02 1N1L

TITLE CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE TITLE 2 COMPLEX WITH COVALENTLY BOUND INHIBITOR (GW472467X)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: HCV NS3 SERINE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEASE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS4A COFACTOR; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: RESIDUES 21-39; COMPND 11 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 GENE: H STRAIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 10 SEQUENCE OF THE PROTEIN IS NATURALLY FOUND IN HEPATITIS C SOURCE 11 VIRUS TYPE 1B.

KEYWDS VIRAL PROTEIN, SERINE PROTEASE, NONSTRUCTURAL PROTEINS, KEYWDS 2 COFACTOR PEPTIDE, HELICASE, INHIBITOR

EXPDTA X-RAY DIFFRACTION

AUTHOR D.M.ANDREWS,H.CHAIGNOT,B.A.COOMBER,A.C.GOOD,S.L.HIND, AUTHOR 2 P.S.JONES,G.MILL,J.E.ROBINSON,T.SKARZYNSKI,M.J.SLATER, AUTHOR 3 D.O.N.SOMERS

REVDAT 2 24-FEB-09 1N1L 1 VERSN REVDAT 1 21-OCT-03 1N1L 0

JRNL AUTH D.M.ANDREWS,H.CHAIGNOT,B.A.COOMBER,A.C.GOOD, JRNL AUTH 2 S.L.HIND,M.R.JOHNSON,P.S.JONES,G.MILL,J.E.ROBINSON, JRNL AUTH 3 T.SKARZYNSKI,M.J.SLATER,D.O.N.SOMERS JRNL TITL PYRROLIDINE-5,5-TRANS-LACTAMS. 2. THE USE OF X-RAY JRNL TITL 2 CRYSTAL STRUCTURE DATA IN THE OPTIMISATION OF P3 JRNL TITL 3 AND P4 SUBSTITUENTS JRNL REF ORG.LETT. V. 4 4479 2002 JRNL REFN ISSN 1523-7060 JRNL PMID 12465917 JRNL DOI 10.1021/OL027014P

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 1.51000 REMARK 3 B12 (A**2) : -0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1N1L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-02. REMARK 100 THE RCSB ID CODE IS RCSB017404.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : YALE MIRRORS + NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INHIBITOR SOAKED INTO CRYSTAL REMARK 280 GENERATED ACCORDING TO KIM ET AL. (1996) CELL, 87, 343-355, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.0K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 112.72500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.08181 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.29667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 112.72500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 65.08181 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.29667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 112.72500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 65.08181 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.29667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 112.72500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 65.08181 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.29667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 112.72500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 65.08181 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.29667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 112.72500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 65.08181 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.29667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 130.16362 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.59333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 130.16362 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.59333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 130.16362 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 50.59333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 130.16362 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.59333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 130.16362 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 50.59333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 130.16362 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 50.59333 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -9 REMARK 465 SER A -8 REMARK 465 MET A -7 REMARK 465 THR A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLN A -3 REMARK 465 GLN A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 181 REMARK 465 SER A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 ALA B -9 REMARK 465 SER B -8 REMARK 465 MET B -7 REMARK 465 THR B -6 REMARK 465 GLY B -5 REMARK 465 GLY B -4 REMARK 465 GLN B -3 REMARK 465 GLN B -2 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ILE B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 TYR B 6 REMARK 465 ALA B 7 REMARK 465 GLN B 8 REMARK 465 GLN B 9 REMARK 465 THR B 10 REMARK 465 ARG B 11 REMARK 465 GLY B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 CYS B 16 REMARK 465 ILE B 17 REMARK 465 ILE B 18 REMARK 465 THR B 19 REMARK 465 SER B 20 REMARK 465 LEU B 21 REMARK 465 THR B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 ASP B 25 REMARK 465 LYS B 26 REMARK 465 ASN B 27 REMARK 465 GLY B 181 REMARK 465 SER B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 LYS C 19 REMARK 465 LYS C 41 REMARK 465 LYS D 19 REMARK 465 LYS D 20 REMARK 465 ILE D 37 REMARK 465 ILE D 38 REMARK 465 PRO D 39 REMARK 465 LYS D 40 REMARK 465 LYS D 41

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 -160.79 -160.17 REMARK 500 PRO A 129 150.42 -47.24 REMARK 500 PHE B 43 -155.21 -161.35 REMARK 500 SER B 128 95.67 -163.08 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 145 SG REMARK 620 2 HOH A 307 O 111.6 REMARK 620 3 CYS A 99 SG 104.8 116.6 REMARK 620 4 CYS A 97 SG 105.4 119.5 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 CYS B 145 SG 105.9 REMARK 620 3 HOH B 304 O 114.0 115.8 REMARK 620 4 CYS B 99 SG 96.4 114.8 108.3 REMARK 620 N 1 2 3

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRL A 200

DBREF 1N1L A 1 180 UNP P27958 POLG_HCVH 1026 1205 DBREF 1N1L B 1 180 UNP P27958 POLG_HCVH 1026 1205 DBREF 1N1L C 21 39 GB 5748511 CAB53095 1678 1696 DBREF 1N1L D 21 39 GB 5748511 CAB53095 1678 1696

SEQADV 1N1L ALA A -9 UNP P27958 CLONING ARTIFACT SEQADV 1N1L SER A -8 UNP P27958 CLONING ARTIFACT SEQADV 1N1L MET A -7 UNP P27958 CLONING ARTIFACT SEQADV 1N1L THR A -6 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLY A -5 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLY A -4 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLN A -3 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLN A -2 UNP P27958 CLONING ARTIFACT SEQADV 1N1L MET A -1 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLY A 0 UNP P27958 CLONING ARTIFACT SEQADV 1N1L THR A 164 UNP P27958 ALA 1190 ENGINEERED SEQADV 1N1L GLY A 181 UNP P27958 EXPRESSION TAG SEQADV 1N1L SER A 182 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS A 183 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS A 184 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS A 185 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS A 186 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS A 187 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS A 188 UNP P27958 EXPRESSION TAG SEQADV 1N1L ALA B -9 UNP P27958 CLONING ARTIFACT SEQADV 1N1L SER B -8 UNP P27958 CLONING ARTIFACT SEQADV 1N1L MET B -7 UNP P27958 CLONING ARTIFACT SEQADV 1N1L THR B -6 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLY B -5 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLY B -4 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLN B -3 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLN B -2 UNP P27958 CLONING ARTIFACT SEQADV 1N1L MET B -1 UNP P27958 CLONING ARTIFACT SEQADV 1N1L GLY B 0 UNP P27958 CLONING ARTIFACT SEQADV 1N1L THR B 164 UNP P27958 ALA 1190 ENGINEERED SEQADV 1N1L GLY B 181 UNP P27958 EXPRESSION TAG SEQADV 1N1L SER B 182 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS B 183 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS B 184 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS B 185 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS B 186 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS B 187 UNP P27958 EXPRESSION TAG SEQADV 1N1L HIS B 188 UNP P27958 EXPRESSION TAG SEQADV 1N1L LYS C 19 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS C 20 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS C 40 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS C 41 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS D 19 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS D 20 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS D 40 GB 5748511 CLONING ARTIFACT SEQADV 1N1L LYS D 41 GB 5748511 CLONING ARTIFACT

SEQRES 1 A 198 ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO ILE SEQRES 2 A 198 THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY CYS SEQRES 3 A 198 ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN VAL SEQRES 4 A 198 GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN THR SEQRES 5 A 198 PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR VAL SEQRES 6 A 198 TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS SEQRES 7 A 198 GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN ASP SEQRES 8 A 198 LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER LEU SEQRES 9 A 198 THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL SEQRES 10 A 198 THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY SEQRES 11 A 198 ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER SEQRES 12 A 198 TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO SEQRES 13 A 198 ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL CYS SEQRES 14 A 198 THR ARG GLY VAL THR LYS ALA VAL ASP PHE ILE PRO VAL SEQRES 15 A 198 GLU ASN LEU GLU THR THR MET ARG GLY SER HIS HIS HIS SEQRES 16 A 198 HIS HIS HIS SEQRES 1 B 198 ALA SER MET THR GLY GLY GLN GLN MET GLY ALA PRO ILE SEQRES 2 B 198 THR ALA TYR ALA GLN GLN THR ARG GLY LEU LEU GLY CYS SEQRES 3 B 198 ILE ILE THR SER LEU THR GLY ARG ASP LYS ASN GLN VAL SEQRES 4 B 198 GLU GLY GLU VAL GLN ILE VAL SER THR ALA THR GLN THR SEQRES 5 B 198 PHE LEU ALA THR CYS ILE ASN GLY VAL CYS TRP THR VAL SEQRES 6 B 198 TYR HIS GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS SEQRES 7 B 198 GLY PRO VAL ILE GLN MET TYR THR ASN VAL ASP GLN ASP SEQRES 8 B 198 LEU VAL GLY TRP PRO ALA PRO GLN GLY SER ARG SER LEU SEQRES 9 B 198 THR PRO CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL SEQRES 10 B 198 THR ARG HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY SEQRES 11 B 198 ASP SER ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER SEQRES 12 B 198 TYR LEU LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO SEQRES 13 B 198 ALA GLY HIS ALA VAL GLY LEU PHE ARG ALA ALA VAL CYS SEQRES 14 B 198 THR ARG GLY VAL THR LYS ALA VAL ASP PHE ILE PRO VAL SEQRES 15 B 198 GLU ASN LEU GLU THR THR MET ARG GLY SER HIS HIS HIS SEQRES 16 B 198 HIS HIS HIS SEQRES 1 C 23 LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SEQRES 2 C 23 SER GLY LYS PRO ALA ILE ILE PRO LYS LYS SEQRES 1 D 23 LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE VAL LEU SEQRES 2 D 23 SER GLY LYS PRO ALA ILE ILE PRO LYS LYS

HET ZN A 300 1 HET ZN B 300 1 HET TRL A 200 29

HETNAM ZN ZINC ION HETNAM TRL {1-[2-(1-FORMYL-PROPYL)-3-METHANESULFONYLAMINO- HETNAM 2 TRL PYRROLIDINE-1-CARBONYL]-2-METHYL-PROPYL}-CARBAMIC HETNAM 3 TRL ACID TERT-BUTYL ESTER

HETSYN TRL GW472467X

FORMUL 5 ZN 2(ZN 2+) FORMUL 7 TRL C19 H35 N3 O6 S FORMUL 8 HOH *107(H2 O)

HELIX 1 1 GLY A 12 GLY A 23 1 12 HELIX 2 2 TYR A 56 GLY A 60 1 5 HELIX 3 3 ILE A 132 LYS A 136 1 5 HELIX 4 4 VAL A 172 ARG A 180 1 9 HELIX 5 5 TYR B 56 GLY B 60 1 5 HELIX 6 6 SER B 133 LYS B 136 5 4 HELIX 7 7 VAL B 172 MET B 179 1 8

SHEET 1 A 7 TYR A 6 GLN A 9 0 SHEET 2 A 7 VAL C 24 VAL C 30 -1 O VAL C 30 N TYR A 6 SHEET 3 A 7 VAL A 33 SER A 37 -1 N ILE A 35 O VAL C 26 SHEET 4 A 7 THR A 42 ILE A 48 -1 O PHE A 43 N VAL A 36 SHEET 5 A 7 VAL A 51 VAL A 55 -1 O TRP A 53 N THR A 46 SHEET 6 A 7 LEU A 82 PRO A 86 -1 O TRP A 85 N CYS A 52 SHEET 7 A 7 TYR A 75 ASN A 77 -1 N ASN A 77 O LEU A 82 SHEET 1 B 7 ASP A 103 VAL A 107 0 SHEET 2 B 7 VAL A 113 ARG A 118 -1 O VAL A 116 N LEU A 104 SHEET 3 B 7 ARG A 123 PRO A 131 -1 O SER A 125 N ARG A 117 SHEET 4 B 7 VAL A 163 PRO A 171 -1 O THR A 164 N ARG A 130 SHEET 5 B 7 ALA A 150 THR A 160 -1 N ALA A 156 O ASP A 168 SHEET 6 B 7 PRO A 142 LEU A 144 -1 N LEU A 143 O VAL A 151 SHEET 7 B 7 ASP A 103 VAL A 107 -1 N TYR A 105 O LEU A 144 SHEET 1 C 7 TYR B 75 ASN B 77 0 SHEET 2 C 7 LEU B 82 PRO B 86 -1 O LEU B 82 N ASN B 77 SHEET 3 C 7 VAL B 51 VAL B 55 -1 N CYS B 52 O TRP B 85 SHEET 4 C 7 THR B 42 ILE B 48 -1 N THR B 46 O TRP B 53 SHEET 5 C 7 VAL B 33 SER B 37 -1 N GLN B 34 O ALA B 45 SHEET 6 C 7 VAL D 24 VAL D 30 -1 O VAL D 26 N ILE B 35 SHEET 7 C 7 ALA C 36 ILE C 37 -1 N ALA C 36 O VAL D 30 SHEET 1 D 7 ASP B 103 VAL B 107 0 SHEET 2 D 7 VAL B 113 GLY B 120 -1 O VAL B 116 N LEU B 104 SHEET 3 D 7 ARG B 123 PRO B 131 -1 O SER B 125 N ARG B 117 SHEET 4 D 7 VAL B 163 PRO B 171 -1 O THR B 164 N ARG B 130 SHEET 5 D 7 ALA B 150 THR B 160 -1 N ALA B 156 O ASP B 168 SHEET 6 D 7 PRO B 142 LEU B 144 -1 N LEU B 143 O VAL B 151 SHEET 7 D 7 ASP B 103 VAL B 107 -1 N TYR B 105 O LEU B 144

LINK OG SER A 139 C28 TRL A 200 1555 1555 1.58 LINK ZN ZN A 300 SG CYS A 145 1555 1555 2.37 LINK ZN ZN A 300 O HOH A 307 1555 1555 2.22 LINK ZN ZN A 300 SG CYS A 99 1555 1555 2.36 LINK ZN ZN A 300 SG CYS A 97 1555 1555 2.32 LINK ZN ZN B 300 SG CYS B 97 1555 1555 2.36 LINK ZN ZN B 300 SG CYS B 145 1555 1555 2.26 LINK ZN ZN B 300 O HOH B 304 1555 1555 2.32 LINK ZN ZN B 300 SG CYS B 99 1555 1555 2.37

SITE 1 AC1 4 CYS A 97 CYS A 99 CYS A 145 HOH A 307 SITE 1 AC2 4 CYS B 97 CYS B 99 CYS B 145 HOH B 304 SITE 1 AC3 12 GLN A 41 PHE A 43 HIS A 57 ILE A 132 SITE 2 AC3 12 LEU A 135 GLY A 137 SER A 138 SER A 139 SITE 3 AC3 12 ALA A 156 ALA A 157 ASP A 168 HOH A 335

CRYST1 225.450 225.450 75.890 90.00 90.00 120.00 H 3 2 36

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.004436 0.002561 0.000000 0.00000

SCALE2 0.000000 0.005122 0.000000 0.00000

SCALE3 0.000000 0.000000 0.013177 0.00000