10 20 30 40 50 60 70 80 1N1K - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 18-OCT-02 1N1K
TITLE NMR STRUCTURE FOR D(CCGCGG)2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(P*CP*CP*GP*CP*GP*G)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS NMR, RECOMBINATION-LIKE, CCGCGG, DNA
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR D.MONLEON,B.CELDA
REVDAT 3 24-FEB-09 1N1K 1 VERSN REVDAT 2 23-MAY-03 1N1K 1 JRNL REMARK MASTER REVDAT 1 30-OCT-02 1N1K 0
JRNL AUTH D.MONLEON,V.ESTEVE,B.CELDA JRNL TITL NMR STUDY OF HEXANUCLEOTIDE D(CCGCGG)(2) JRNL TITL 2 CONTAINING TWO TRIPLET REPEATS OF FRAGILE X JRNL TITL 3 SYNDROME. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 303 81 2003 JRNL REFN ISSN 0006-291X JRNL PMID 12646170 JRNL DOI 10.1016/S0006-291X(03)00304-8
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 2.6 REMARK 3 AUTHORS : MOLECULAR SIMULATIONS, INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1N1K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-02. REMARK 100 THE RCSB ID CODE IS RCSB017403.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50 MM; 2000 MM REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM NACL, NAN3 1%; 2000 MM REMARK 210 NACL, NAN3 1% REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY, DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING FOR DNA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 DG A 3 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 1 DG A 3 O4' - C1' - N9 ANGL. DEV. = 7.9 DEGREES REMARK 500 1 DC A 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 1 DG A 5 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DG A 6 O4' - C1' - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 1 DC B 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DC B 8 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG B 9 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 1 DG B 9 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 1 DC B 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DG B 11 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DG B 12 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 2 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DG A 3 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 2 DG A 3 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 2 DC A 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 2 DG A 5 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DG A 6 O4' - C1' - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 2 DC B 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 2 DC B 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DG B 9 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 2 DG B 9 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 2 DC B 10 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 2 DG B 11 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 DG B 12 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 2 DG B 12 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 3 DC A 1 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 3 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 3 DG A 3 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 3 DG A 3 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 3 DC A 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 3 DG A 5 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 DG A 6 O4' - C1' - N9 ANGL. DEV. = 7.2 DEGREES REMARK 500 3 DC B 7 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 3 DC B 8 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 3 DG B 9 C1' - O4' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 3 DG B 9 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 3 DC B 10 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 3 DG B 11 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 DG B 12 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 3 DG B 12 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 4 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 4 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 4 DG A 3 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 4 DG A 3 O4' - C1' - N9 ANGL. DEV. = 7.3 DEGREES REMARK 500 4 DC A 4 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 4 DC A 4 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 142 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC A 1 0.11 SIDE_CHAIN REMARK 500 1 DG A 3 0.12 SIDE_CHAIN REMARK 500 1 DC A 4 0.09 SIDE_CHAIN REMARK 500 1 DG B 9 0.13 SIDE_CHAIN REMARK 500 1 DC B 10 0.10 SIDE_CHAIN REMARK 500 1 DG B 11 0.08 SIDE_CHAIN REMARK 500 1 DG B 12 0.09 SIDE_CHAIN REMARK 500 2 DC A 1 0.06 SIDE_CHAIN REMARK 500 2 DG A 3 0.12 SIDE_CHAIN REMARK 500 2 DC A 4 0.09 SIDE_CHAIN REMARK 500 2 DG B 9 0.12 SIDE_CHAIN REMARK 500 2 DC B 10 0.08 SIDE_CHAIN REMARK 500 3 DC A 1 0.07 SIDE_CHAIN REMARK 500 3 DG A 3 0.12 SIDE_CHAIN REMARK 500 3 DC A 4 0.09 SIDE_CHAIN REMARK 500 3 DG B 9 0.12 SIDE_CHAIN REMARK 500 3 DC B 10 0.08 SIDE_CHAIN REMARK 500 4 DC A 1 0.06 SIDE_CHAIN REMARK 500 4 DG A 3 0.11 SIDE_CHAIN REMARK 500 4 DC A 4 0.06 SIDE_CHAIN REMARK 500 4 DG A 5 0.06 SIDE_CHAIN REMARK 500 4 DG B 9 0.13 SIDE_CHAIN REMARK 500 4 DC B 10 0.08 SIDE_CHAIN REMARK 500 5 DC A 1 0.06 SIDE_CHAIN REMARK 500 5 DG A 3 0.11 SIDE_CHAIN REMARK 500 5 DC A 4 0.07 SIDE_CHAIN REMARK 500 5 DG B 9 0.12 SIDE_CHAIN REMARK 500 5 DC B 10 0.08 SIDE_CHAIN REMARK 500 6 DC A 1 0.12 SIDE_CHAIN REMARK 500 6 DG A 3 0.12 SIDE_CHAIN REMARK 500 6 DC A 4 0.07 SIDE_CHAIN REMARK 500 6 DG B 9 0.12 SIDE_CHAIN REMARK 500 6 DC B 10 0.10 SIDE_CHAIN REMARK 500 6 DG B 11 0.08 SIDE_CHAIN REMARK 500 6 DG B 12 0.09 SIDE_CHAIN REMARK 500 7 DC A 1 0.12 SIDE_CHAIN REMARK 500 7 DG A 3 0.12 SIDE_CHAIN REMARK 500 7 DC A 4 0.07 SIDE_CHAIN REMARK 500 7 DG B 9 0.12 SIDE_CHAIN REMARK 500 7 DC B 10 0.10 SIDE_CHAIN REMARK 500 7 DG B 11 0.08 SIDE_CHAIN REMARK 500 7 DG B 12 0.09 SIDE_CHAIN REMARK 500 8 DC A 1 0.11 SIDE_CHAIN REMARK 500 8 DG A 3 0.12 SIDE_CHAIN REMARK 500 8 DC A 4 0.08 SIDE_CHAIN REMARK 500 8 DG B 9 0.13 SIDE_CHAIN REMARK 500 8 DC B 10 0.10 SIDE_CHAIN REMARK 500 8 DG B 11 0.08 SIDE_CHAIN REMARK 500 8 DG B 12 0.09 SIDE_CHAIN REMARK 500 9 DC A 1 0.12 SIDE_CHAIN REMARK 500 9 DG A 3 0.12 SIDE_CHAIN REMARK 500 9 DC A 4 0.09 SIDE_CHAIN REMARK 500 9 DG B 9 0.13 SIDE_CHAIN REMARK 500 9 DC B 10 0.10 SIDE_CHAIN REMARK 500 9 DG B 11 0.08 SIDE_CHAIN REMARK 500 9 DG B 12 0.09 SIDE_CHAIN REMARK 500 10 DC A 1 0.11 SIDE_CHAIN REMARK 500 10 DG A 3 0.12 SIDE_CHAIN REMARK 500 10 DC A 4 0.09 SIDE_CHAIN REMARK 500 10 DG B 9 0.13 SIDE_CHAIN REMARK 500 10 DC B 10 0.10 SIDE_CHAIN REMARK 500 10 DG B 11 0.08 SIDE_CHAIN REMARK 500 10 DG B 12 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1N1K A 1 6 PDB 1N1K 1N1K 1 6 DBREF 1N1K B 7 12 PDB 1N1K 1N1K 7 12
SEQRES 1 A 6 DC DC DG DC DG DG SEQRES 1 B 6 DC DC DG DC DG DG
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000