10 20 30 40 50 60 70 80 1N17 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 16-OCT-02 1N17
TITLE STRUCTURE AND DYNAMICS OF THIOGUANINE-MODIFIED DUPLEX DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*TP*AP*AP*GP*(S6G)P*AP*AP*AP*GP*CP*C)- COMPND 3 3'; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*AP*GP*C)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES
KEYWDS THIOGUANINE, 6-MERCAPTO PURINE, ANTI-CANCER THERAPY, DNA
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR L.SOMERVILLE,E.Y.KRYNETSKI,N.F.KRYNETSKAIA,R.D.BEGER, AUTHOR 2 W.ZHANG,C.A.MARHEFKA,W.E.EVANS,R.W.KRIWACKI
REVDAT 3 24-FEB-09 1N17 1 VERSN REVDAT 2 15-APR-03 1N17 1 JRNL REVDAT 1 23-OCT-02 1N17 0
JRNL AUTH L.SOMERVILLE,E.Y.KRYNETSKI,N.F.KRYNETSKAIA, JRNL AUTH 2 R.D.BEGER,W.ZHANG,C.A.MARHEFKA,W.E.EVANS, JRNL AUTH 3 R.W.KRIWACKI JRNL TITL STRUCTURE AND DYNAMICS OF THIOGUANINE-MODIFIED JRNL TITL 2 DUPLEX DNA JRNL REF J.BIOL.CHEM. V. 278 1005 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12401802 JRNL DOI 10.1074/JBC.M204243200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED MOLECULAR DYNAMICS (RMD) REMARK 3 STRUCTURE REFINEMENT OF B-DNA STARTING STRUCTURES WAS REMARK 3 PERFORMED USING AN XPLOR 3.1 (26) SIMULATED ANNEALING PROTOCOL REMARK 3 EMPLOYING THE CHEATHAM, ET AL. (19), FORCE FIELD. THIS FORCE REMARK 3 FIELD WAS MODIFIED TO INCLUDE PARAMETERIZATION OF THIOG, AS REMARK 3 DESCRIBED ABOVE. STARTING STRUCTURES WERE ENERGY MINIMIZED BY REMARK 3 160 STEPS OF POWELLS CONJUGATE GRADIENT MINIMIZATION FOLLOWED REMARK 3 BY RMD WHILE HEATING TO 600 K AT 50 K SEC-1, COOLING TO 300 K REMARK 3 AT 25 K SEC-1, AND EQUILIBRATING AT 293 K OVER 250 PS.
REMARK 4 REMARK 4 1N17 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-02. REMARK 100 THE RCSB ID CODE IS RCSB017390.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : APPROX. 65 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : SINGLE-STRANDED REMARK 210 OLIGODEOXYRIBONUCLEOTIDES, D(5-GCTAAGGAAAGCC-3) AND THE REMARK 210 COMPLEMENTARY STRAND D(5-GGCTTTCCTTAGC-3), WERE SYNTHESIZED REMARK 210 USING STANDARD PHOSPHORAMIDITE CHEMISTRY. THE THIOG-MODIFIED REMARK 210 OLIGODEOXYRIBONUCLEOTIDE, D(5-GCTAAGTHIOGAAAGCC-3), WAS REMARK 210 COMMERCIALLY SYNTHESIZED (TRILINK BIOTECHNOLOGIES) USING 6- REMARK 210 THIO-DEOYXGUANOSINE-CYANOETHYL PHOSPHORAMIDITE(GLEN RESEARCH). REMARK 210 SINGLE-STRANDED DNA MOLECULES WERE PURIFIED USING ANION REMARK 210 EXCHANGE CHROMATOGRAPHY (MONOQ HR 5/5, PHARMACIA BIOTECH). REMARK 210 PURITY WAS CONFIRMED BY UV SPECTROSCOPY, ANALYTICAL ANION REMARK 210 EXCHANGE CHROMATOGRAPHY, AND MASS SPECTROMETRY. THE GC AND REMARK 210 THIOGC DNA DUPLEXES WERE EACH PREPARED BY ANNEALING EITHER REMARK 210 EQUIMOLAR AMOUNTS OF COMPLIMENTARY STRANDS OR A 1.2 MOLAR REMARK 210 EXCESS OF THE UNMODIFIED STRAND TO THE MODIFIED STRAND IN REMARK 210 BUFFER A (10 MM SODIUM PHOSPHATE, 50 MM NACL, PH 7.0) AT 70 C REMARK 210 FOR 5 MIN., FOLLOWED BY SLOW COOLING OVER 12 HOURS TO ROOM REMARK 210 TEMPERATURE. DNA DUPLEXES WERE PURIFIED USING GEL FILTRATION REMARK 210 CHROMATOGRAPHY (SUPERDEX PEPTIDE HR 10/30, PHARMACIA BIOTECH) REMARK 210 IN BUFFER A. REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : RESTRAINED MOLECULAR REMARK 210 DYNAMICS, RELAXATION MATRIX REMARK 210 ANALYSIS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE REMARK 210 WITH EXPERIMENTAL NOESY REMARK 210 SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DG A 1 C5' DG A 1 C4' 0.044 REMARK 500 1 DG A 1 C6 DG A 1 N1 -0.046 REMARK 500 1 DC A 2 C2' DC A 2 C1' 0.081 REMARK 500 1 DT A 3 P DT A 3 O5' 0.086 REMARK 500 1 DT A 3 C5' DT A 3 C4' 0.069 REMARK 500 1 DT A 3 O4' DT A 3 C1' -0.073 REMARK 500 1 DT A 3 C5 DT A 3 C6 0.074 REMARK 500 1 DC A 2 O3' DT A 3 P -0.073 REMARK 500 1 DA A 4 P DA A 4 O5' -0.064 REMARK 500 1 DA A 4 C5' DA A 4 C4' 0.057 REMARK 500 1 DA A 4 N3 DA A 4 C4 0.046 REMARK 500 1 DA A 4 C5 DA A 4 N7 0.044 REMARK 500 1 DA A 4 N7 DA A 4 C8 0.053 REMARK 500 1 DA A 5 N3 DA A 5 C4 0.039 REMARK 500 1 DA A 5 C6 DA A 5 N1 -0.044 REMARK 500 1 DG A 6 C4' DG A 6 C3' 0.063 REMARK 500 1 DG A 6 O4' DG A 6 C4' -0.072 REMARK 500 1 DG A 6 N3 DG A 6 C4 0.084 REMARK 500 1 DG A 6 C4 DG A 6 C5 0.046 REMARK 500 1 DG A 6 N7 DG A 6 C8 -0.045 REMARK 500 1 DA A 8 O4' DA A 8 C1' 0.070 REMARK 500 1 DA A 8 C6 DA A 8 N1 -0.051 REMARK 500 1 DA A 8 N9 DA A 8 C4 0.040 REMARK 500 1 DA A 8 C6 DA A 8 N6 -0.053 REMARK 500 1 DA A 10 N7 DA A 10 C8 0.045 REMARK 500 1 DG A 11 C5' DG A 11 C4' 0.072 REMARK 500 1 DG A 11 C5 DG A 11 N7 0.042 REMARK 500 1 DG A 11 N9 DG A 11 C4 -0.048 REMARK 500 1 DC A 12 C4' DC A 12 C3' 0.060 REMARK 500 1 DC A 12 N1 DC A 12 C6 0.037 REMARK 500 1 DC A 13 O3' DC A 13 C3' -0.058 REMARK 500 1 DG B 14 C5' DG B 14 C4' 0.047 REMARK 500 1 DG B 14 N1 DG B 14 C2 -0.051 REMARK 500 1 DG B 14 C8 DG B 14 N9 -0.048 REMARK 500 1 DC B 16 C4' DC B 16 C3' 0.063 REMARK 500 1 DG B 15 O3' DC B 16 P 0.076 REMARK 500 1 DT B 17 C4 DT B 17 C5 0.059 REMARK 500 1 DT B 17 C5 DT B 17 C7 0.046 REMARK 500 1 DT B 18 C2' DT B 18 C1' 0.071 REMARK 500 1 DT B 18 C5 DT B 18 C7 -0.038 REMARK 500 1 DT B 19 C5 DT B 19 C7 0.062 REMARK 500 1 DC B 20 C4' DC B 20 C3' 0.062 REMARK 500 1 DC B 21 C5' DC B 21 C4' 0.092 REMARK 500 1 DC B 21 C3' DC B 21 C2' -0.055 REMARK 500 1 DC B 21 N1 DC B 21 C6 0.041 REMARK 500 1 DC B 21 N3 DC B 21 C4 -0.063 REMARK 500 1 DT B 22 O3' DT B 22 C3' -0.059 REMARK 500 1 DT B 22 C2 DT B 22 N3 -0.076 REMARK 500 1 DT B 22 C4 DT B 22 C5 0.055 REMARK 500 1 DT B 22 C6 DT B 22 N1 0.097 REMARK 500 REMARK 500 THIS ENTRY HAS 1005 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 1 C1' - O4' - C4' ANGL. DEV. = -8.4 DEGREES REMARK 500 1 DG A 1 O4' - C1' - N9 ANGL. DEV. = 13.1 DEGREES REMARK 500 1 DG A 1 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DG A 1 C8 - N9 - C4 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DG A 1 N3 - C4 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DG A 1 N3 - C2 - N2 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DC A 2 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DC A 2 C6 - N1 - C2 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DC A 2 N3 - C2 - O2 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DT A 3 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DT A 3 C1' - O4' - C4' ANGL. DEV. = 6.7 DEGREES REMARK 500 1 DT A 3 O4' - C1' - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 1 DT A 3 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DT A 3 C2 - N3 - C4 ANGL. DEV. = -5.0 DEGREES REMARK 500 1 DT A 3 N3 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DT A 3 C5 - C6 - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 DT A 3 N3 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 DA A 4 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DA A 4 C2 - N3 - C4 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DA A 4 C4 - C5 - C6 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 DA A 4 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DA A 4 C4 - C5 - N7 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DA A 4 C5 - N7 - C8 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DA A 4 C8 - N9 - C4 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DA A 4 N9 - C4 - C5 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DA A 4 N1 - C6 - N6 ANGL. DEV. = -10.6 DEGREES REMARK 500 1 DA A 4 C5 - C6 - N6 ANGL. DEV. = 6.9 DEGREES REMARK 500 1 DA A 5 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DA A 5 N1 - C2 - N3 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DA A 5 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DA A 5 C5 - C6 - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DA A 5 C4 - C5 - N7 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA A 5 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DA A 5 C8 - N9 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA A 5 N9 - C4 - C5 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 DA A 5 N1 - C6 - N6 ANGL. DEV. = -14.1 DEGREES REMARK 500 1 DA A 5 C5 - C6 - N6 ANGL. DEV. = 10.0 DEGREES REMARK 500 1 DG A 6 C1' - O4' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 1 DG A 6 O4' - C1' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 1 DG A 6 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DG A 6 C6 - N1 - C2 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DG A 6 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DG A 6 N3 - C4 - C5 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DG A 6 C4 - C5 - C6 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 DG A 6 C5 - N7 - C8 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 DG A 6 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 DG A 6 N9 - C4 - C5 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DG A 6 C6 - C5 - N7 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 DA A 8 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 2645 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DG A 1 0.08 SIDE_CHAIN REMARK 500 1 DC A 2 0.07 SIDE_CHAIN REMARK 500 1 DG A 6 0.07 SIDE_CHAIN REMARK 500 1 DA A 9 0.07 SIDE_CHAIN REMARK 500 1 DG A 11 0.18 SIDE_CHAIN REMARK 500 1 DG B 15 0.06 SIDE_CHAIN REMARK 500 1 DC B 16 0.07 SIDE_CHAIN REMARK 500 1 DT B 18 0.06 SIDE_CHAIN REMARK 500 1 DT B 19 0.15 SIDE_CHAIN REMARK 500 1 DC B 21 0.07 SIDE_CHAIN REMARK 500 1 DT B 23 0.07 SIDE_CHAIN REMARK 500 1 DA B 24 0.08 SIDE_CHAIN REMARK 500 1 DG B 25 0.12 SIDE_CHAIN REMARK 500 2 DG A 1 0.08 SIDE_CHAIN REMARK 500 2 DC A 2 0.10 SIDE_CHAIN REMARK 500 2 DT A 3 0.07 SIDE_CHAIN REMARK 500 2 DA A 4 0.07 SIDE_CHAIN REMARK 500 2 DA A 5 0.07 SIDE_CHAIN REMARK 500 2 DA A 8 0.08 SIDE_CHAIN REMARK 500 2 DA A 10 0.07 SIDE_CHAIN REMARK 500 2 DG A 11 0.10 SIDE_CHAIN REMARK 500 2 DC A 13 0.09 SIDE_CHAIN REMARK 500 2 DG B 14 0.06 SIDE_CHAIN REMARK 500 2 DG B 15 0.12 SIDE_CHAIN REMARK 500 2 DC B 20 0.09 SIDE_CHAIN REMARK 500 2 DT B 22 0.09 SIDE_CHAIN REMARK 500 2 DT B 23 0.07 SIDE_CHAIN REMARK 500 2 DG B 25 0.06 SIDE_CHAIN REMARK 500 2 DC B 26 0.16 SIDE_CHAIN REMARK 500 3 DG A 1 0.09 SIDE_CHAIN REMARK 500 3 DC A 2 0.08 SIDE_CHAIN REMARK 500 3 DA A 5 0.07 SIDE_CHAIN REMARK 500 3 DG A 6 0.07 SIDE_CHAIN REMARK 500 3 DA A 10 0.07 SIDE_CHAIN REMARK 500 3 DG A 11 0.07 SIDE_CHAIN REMARK 500 3 DG B 15 0.10 SIDE_CHAIN REMARK 500 3 DT B 19 0.10 SIDE_CHAIN REMARK 500 3 DC B 20 0.10 SIDE_CHAIN REMARK 500 3 DC B 21 0.11 SIDE_CHAIN REMARK 500 3 DT B 22 0.10 SIDE_CHAIN REMARK 500 3 DT B 23 0.08 SIDE_CHAIN REMARK 500 3 DA B 24 0.08 SIDE_CHAIN REMARK 500 3 DG B 25 0.07 SIDE_CHAIN REMARK 500 4 DG A 1 0.11 SIDE_CHAIN REMARK 500 4 DT A 3 0.09 SIDE_CHAIN REMARK 500 4 DA A 5 0.11 SIDE_CHAIN REMARK 500 4 DG A 6 0.07 SIDE_CHAIN REMARK 500 4 DA A 8 0.11 SIDE_CHAIN REMARK 500 4 DG A 11 0.09 SIDE_CHAIN REMARK 500 4 DG B 14 0.10 SIDE_CHAIN REMARK 500 4 DG B 15 0.08 SIDE_CHAIN REMARK 500 4 DT B 17 0.11 SIDE_CHAIN REMARK 500 4 DT B 19 0.15 SIDE_CHAIN REMARK 500 4 DT B 23 0.07 SIDE_CHAIN REMARK 500 4 DA B 24 0.08 SIDE_CHAIN REMARK 500 4 DG B 25 0.12 SIDE_CHAIN REMARK 500 4 DC B 26 0.10 SIDE_CHAIN REMARK 500 5 DC A 2 0.12 SIDE_CHAIN REMARK 500 5 DT A 3 0.09 SIDE_CHAIN REMARK 500 5 DA A 4 0.09 SIDE_CHAIN REMARK 500 5 DA A 5 0.10 SIDE_CHAIN REMARK 500 5 DG A 6 0.09 SIDE_CHAIN REMARK 500 5 DG A 11 0.10 SIDE_CHAIN REMARK 500 5 DC A 12 0.08 SIDE_CHAIN REMARK 500 5 DG B 15 0.06 SIDE_CHAIN REMARK 500 5 DC B 16 0.10 SIDE_CHAIN REMARK 500 5 DT B 17 0.07 SIDE_CHAIN REMARK 500 5 DT B 18 0.09 SIDE_CHAIN REMARK 500 5 DC B 21 0.07 SIDE_CHAIN REMARK 500 5 DT B 22 0.07 SIDE_CHAIN REMARK 500 5 DT B 23 0.15 SIDE_CHAIN REMARK 500 5 DG B 25 0.11 SIDE_CHAIN REMARK 500 5 DC B 26 0.11 SIDE_CHAIN REMARK 500 6 DG A 1 0.06 SIDE_CHAIN REMARK 500 6 DT A 3 0.14 SIDE_CHAIN REMARK 500 6 DG A 6 0.06 SIDE_CHAIN REMARK 500 6 DA A 8 0.08 SIDE_CHAIN REMARK 500 6 DA A 9 0.09 SIDE_CHAIN REMARK 500 6 DG A 11 0.11 SIDE_CHAIN REMARK 500 6 DC A 12 0.07 SIDE_CHAIN REMARK 500 6 DC A 13 0.10 SIDE_CHAIN REMARK 500 6 DC B 16 0.11 SIDE_CHAIN REMARK 500 6 DT B 18 0.12 SIDE_CHAIN REMARK 500 6 DC B 20 0.09 SIDE_CHAIN REMARK 500 6 DT B 22 0.10 SIDE_CHAIN REMARK 500 6 DT B 23 0.13 SIDE_CHAIN REMARK 500 6 DA B 24 0.07 SIDE_CHAIN REMARK 500 6 DG B 25 0.10 SIDE_CHAIN REMARK 500 6 DC B 26 0.17 SIDE_CHAIN REMARK 500 7 DG A 1 0.09 SIDE_CHAIN REMARK 500 7 DG A 6 0.10 SIDE_CHAIN REMARK 500 7 DA A 8 0.09 SIDE_CHAIN REMARK 500 7 DA A 10 0.07 SIDE_CHAIN REMARK 500 7 DG A 11 0.08 SIDE_CHAIN REMARK 500 7 DC A 12 0.11 SIDE_CHAIN REMARK 500 7 DC A 13 0.07 SIDE_CHAIN REMARK 500 7 DG B 14 0.07 SIDE_CHAIN REMARK 500 7 DG B 15 0.17 SIDE_CHAIN REMARK 500 7 DT B 17 0.09 SIDE_CHAIN REMARK 500 7 DT B 18 0.09 SIDE_CHAIN REMARK 500 7 DT B 19 0.08 SIDE_CHAIN REMARK 500 7 DT B 22 0.11 SIDE_CHAIN REMARK 500 7 DT B 23 0.09 SIDE_CHAIN REMARK 500 7 DA B 24 0.08 SIDE_CHAIN REMARK 500 7 DG B 25 0.13 SIDE_CHAIN REMARK 500 7 DC B 26 0.07 SIDE_CHAIN REMARK 500 8 DG A 1 0.08 SIDE_CHAIN REMARK 500 8 DC A 2 0.16 SIDE_CHAIN REMARK 500 8 DA A 5 0.06 SIDE_CHAIN REMARK 500 8 DA A 8 0.09 SIDE_CHAIN REMARK 500 8 DA A 9 0.10 SIDE_CHAIN REMARK 500 8 DG A 11 0.13 SIDE_CHAIN REMARK 500 8 DG B 14 0.09 SIDE_CHAIN REMARK 500 8 DG B 15 0.11 SIDE_CHAIN REMARK 500 8 DT B 17 0.08 SIDE_CHAIN REMARK 500 8 DT B 18 0.10 SIDE_CHAIN REMARK 500 8 DT B 19 0.13 SIDE_CHAIN REMARK 500 8 DC B 21 0.07 SIDE_CHAIN REMARK 500 8 DT B 22 0.08 SIDE_CHAIN REMARK 500 8 DG B 25 0.08 SIDE_CHAIN REMARK 500 9 DG A 1 0.10 SIDE_CHAIN REMARK 500 9 DC A 2 0.07 SIDE_CHAIN REMARK 500 9 DG A 6 0.07 SIDE_CHAIN REMARK 500 9 DA A 10 0.07 SIDE_CHAIN REMARK 500 9 DG A 11 0.06 SIDE_CHAIN REMARK 500 9 DC A 12 0.08 SIDE_CHAIN REMARK 500 9 DC A 13 0.11 SIDE_CHAIN REMARK 500 9 DG B 14 0.10 SIDE_CHAIN REMARK 500 9 DT B 17 0.07 SIDE_CHAIN REMARK 500 9 DT B 19 0.12 SIDE_CHAIN REMARK 500 9 DC B 21 0.17 SIDE_CHAIN REMARK 500 9 DT B 23 0.13 SIDE_CHAIN REMARK 500 9 DA B 24 0.07 SIDE_CHAIN REMARK 500 9 DG B 25 0.15 SIDE_CHAIN REMARK 500 9 DC B 26 0.10 SIDE_CHAIN REMARK 500 10 DC A 2 0.20 SIDE_CHAIN REMARK 500 10 DT A 3 0.11 SIDE_CHAIN REMARK 500 10 DG A 6 0.07 SIDE_CHAIN REMARK 500 10 DA A 9 0.06 SIDE_CHAIN REMARK 500 10 DA A 10 0.07 SIDE_CHAIN REMARK 500 10 DG A 11 0.13 SIDE_CHAIN REMARK 500 10 DC A 12 0.17 SIDE_CHAIN REMARK 500 10 DG B 14 0.09 SIDE_CHAIN REMARK 500 10 DG B 15 0.12 SIDE_CHAIN REMARK 500 10 DC B 16 0.09 SIDE_CHAIN REMARK 500 10 DT B 18 0.08 SIDE_CHAIN REMARK 500 10 DC B 20 0.10 SIDE_CHAIN REMARK 500 10 DC B 21 0.10 SIDE_CHAIN REMARK 500 10 DA B 24 0.10 SIDE_CHAIN REMARK 500 10 DG B 25 0.08 SIDE_CHAIN REMARK 500 11 DG A 1 0.08 SIDE_CHAIN REMARK 500 11 DC A 2 0.08 SIDE_CHAIN REMARK 500 11 DT A 3 0.10 SIDE_CHAIN REMARK 500 11 DA A 4 0.08 SIDE_CHAIN REMARK 500 11 DA A 5 0.06 SIDE_CHAIN REMARK 500 11 DG A 6 0.10 SIDE_CHAIN REMARK 500 11 DA A 8 0.07 SIDE_CHAIN REMARK 500 11 DG A 11 0.09 SIDE_CHAIN REMARK 500 11 DC A 12 0.14 SIDE_CHAIN REMARK 500 11 DC A 13 0.10 SIDE_CHAIN REMARK 500 11 DG B 14 0.08 SIDE_CHAIN REMARK 500 11 DG B 15 0.11 SIDE_CHAIN REMARK 500 11 DT B 17 0.09 SIDE_CHAIN REMARK 500 11 DT B 18 0.07 SIDE_CHAIN REMARK 500 11 DT B 19 0.15 SIDE_CHAIN REMARK 500 11 DT B 22 0.09 SIDE_CHAIN REMARK 500 11 DG B 25 0.08 SIDE_CHAIN REMARK 500 11 DC B 26 0.10 SIDE_CHAIN REMARK 500 12 DG A 1 0.06 SIDE_CHAIN REMARK 500 12 DC A 2 0.17 SIDE_CHAIN REMARK 500 12 DT A 3 0.22 SIDE_CHAIN REMARK 500 12 DA A 4 0.06 SIDE_CHAIN REMARK 500 12 DA A 5 0.09 SIDE_CHAIN REMARK 500 12 DA A 8 0.08 SIDE_CHAIN REMARK 500 12 DG A 11 0.11 SIDE_CHAIN REMARK 500 12 DC A 12 0.09 SIDE_CHAIN REMARK 500 12 DG B 14 0.07 SIDE_CHAIN REMARK 500 12 DG B 15 0.10 SIDE_CHAIN REMARK 500 12 DT B 17 0.07 SIDE_CHAIN REMARK 500 12 DC B 20 0.07 SIDE_CHAIN REMARK 500 12 DC B 21 0.17 SIDE_CHAIN REMARK 500 12 DT B 22 0.08 SIDE_CHAIN REMARK 500 12 DG B 25 0.09 SIDE_CHAIN REMARK 500 12 DC B 26 0.08 SIDE_CHAIN REMARK 500 13 DT A 3 0.06 SIDE_CHAIN REMARK 500 13 DA A 5 0.05 SIDE_CHAIN REMARK 500 13 DG A 6 0.12 SIDE_CHAIN REMARK 500 13 DA A 9 0.09 SIDE_CHAIN REMARK 500 13 DG A 11 0.07 SIDE_CHAIN REMARK 500 13 DC A 13 0.07 SIDE_CHAIN REMARK 500 13 DG B 15 0.13 SIDE_CHAIN REMARK 500 13 DC B 16 0.12 SIDE_CHAIN REMARK 500 13 DT B 18 0.11 SIDE_CHAIN REMARK 500 13 DT B 19 0.11 SIDE_CHAIN REMARK 500 13 DC B 20 0.09 SIDE_CHAIN REMARK 500 13 DT B 22 0.16 SIDE_CHAIN REMARK 500 13 DT B 23 0.07 SIDE_CHAIN REMARK 500 13 DA B 24 0.10 SIDE_CHAIN REMARK 500 13 DC B 26 0.10 SIDE_CHAIN REMARK 500 14 DG A 1 0.07 SIDE_CHAIN REMARK 500 14 DC A 2 0.06 SIDE_CHAIN REMARK 500 14 DT A 3 0.16 SIDE_CHAIN REMARK 500 14 DG A 6 0.07 SIDE_CHAIN REMARK 500 14 DG A 11 0.18 SIDE_CHAIN REMARK 500 14 DC A 12 0.09 SIDE_CHAIN REMARK 500 14 DC A 13 0.08 SIDE_CHAIN REMARK 500 14 DG B 14 0.10 SIDE_CHAIN REMARK 500 14 DG B 15 0.10 SIDE_CHAIN REMARK 500 14 DC B 16 0.07 SIDE_CHAIN REMARK 500 14 DT B 17 0.12 SIDE_CHAIN REMARK 500 14 DT B 18 0.13 SIDE_CHAIN REMARK 500 14 DC B 21 0.10 SIDE_CHAIN REMARK 500 14 DG B 25 0.07 SIDE_CHAIN REMARK 500 14 DC B 26 0.10 SIDE_CHAIN REMARK 500 15 DT A 3 0.08 SIDE_CHAIN REMARK 500 15 DA A 4 0.07 SIDE_CHAIN REMARK 500 15 DG A 6 0.08 SIDE_CHAIN REMARK 500 15 DA A 8 0.08 SIDE_CHAIN REMARK 500 15 DG A 11 0.14 SIDE_CHAIN REMARK 500 15 DC A 12 0.08 SIDE_CHAIN REMARK 500 15 DG B 14 0.07 SIDE_CHAIN REMARK 500 15 DG B 15 0.09 SIDE_CHAIN REMARK 500 15 DC B 16 0.09 SIDE_CHAIN REMARK 500 15 DT B 18 0.08 SIDE_CHAIN REMARK 500 15 DT B 19 0.08 SIDE_CHAIN REMARK 500 15 DC B 20 0.08 SIDE_CHAIN REMARK 500 15 DT B 22 0.10 SIDE_CHAIN REMARK 500 15 DT B 23 0.10 SIDE_CHAIN REMARK 500 15 DG B 25 0.10 SIDE_CHAIN REMARK 500 16 DC A 2 0.13 SIDE_CHAIN REMARK 500 16 DT A 3 0.11 SIDE_CHAIN REMARK 500 16 DA A 5 0.09 SIDE_CHAIN REMARK 500 16 DA A 8 0.06 SIDE_CHAIN REMARK 500 16 DA A 10 0.06 SIDE_CHAIN REMARK 500 16 DG A 11 0.09 SIDE_CHAIN REMARK 500 16 DC A 13 0.07 SIDE_CHAIN REMARK 500 16 DG B 15 0.09 SIDE_CHAIN REMARK 500 16 DC B 16 0.13 SIDE_CHAIN REMARK 500 16 DT B 19 0.10 SIDE_CHAIN REMARK 500 16 DC B 20 0.08 SIDE_CHAIN REMARK 500 16 DT B 22 0.16 SIDE_CHAIN REMARK 500 16 DG B 25 0.08 SIDE_CHAIN REMARK 500 16 DC B 26 0.08 SIDE_CHAIN REMARK 500 17 DG A 1 0.09 SIDE_CHAIN REMARK 500 17 DA A 5 0.06 SIDE_CHAIN REMARK 500 17 DG A 6 0.08 SIDE_CHAIN REMARK 500 17 DG A 11 0.07 SIDE_CHAIN REMARK 500 17 DC A 13 0.10 SIDE_CHAIN REMARK 500 17 DG B 14 0.07 SIDE_CHAIN REMARK 500 17 DG B 15 0.08 SIDE_CHAIN REMARK 500 17 DC B 16 0.09 SIDE_CHAIN REMARK 500 17 DT B 18 0.07 SIDE_CHAIN REMARK 500 17 DC B 21 0.11 SIDE_CHAIN REMARK 500 17 DT B 22 0.08 SIDE_CHAIN REMARK 500 17 DT B 23 0.12 SIDE_CHAIN REMARK 500 17 DG B 25 0.09 SIDE_CHAIN REMARK 500 17 DC B 26 0.08 SIDE_CHAIN REMARK 500 18 DC A 2 0.07 SIDE_CHAIN REMARK 500 18 DA A 4 0.09 SIDE_CHAIN REMARK 500 18 DG A 6 0.10 SIDE_CHAIN REMARK 500 18 DG A 11 0.13 SIDE_CHAIN REMARK 500 18 DC A 12 0.09 SIDE_CHAIN REMARK 500 18 DG B 15 0.10 SIDE_CHAIN REMARK 500 18 DT B 17 0.08 SIDE_CHAIN REMARK 500 18 DT B 18 0.09 SIDE_CHAIN REMARK 500 18 DT B 19 0.14 SIDE_CHAIN REMARK 500 18 DC B 20 0.11 SIDE_CHAIN REMARK 500 18 DC B 21 0.11 SIDE_CHAIN REMARK 500 18 DT B 22 0.13 SIDE_CHAIN REMARK 500 18 DT B 23 0.17 SIDE_CHAIN REMARK 500 18 DA B 24 0.08 SIDE_CHAIN REMARK 500 18 DG B 25 0.15 SIDE_CHAIN REMARK 500 18 DC B 26 0.09 SIDE_CHAIN REMARK 500 19 DG A 1 0.15 SIDE_CHAIN REMARK 500 19 DC A 2 0.08 SIDE_CHAIN REMARK 500 19 DT A 3 0.17 SIDE_CHAIN REMARK 500 19 DA A 9 0.06 SIDE_CHAIN REMARK 500 19 DA A 10 0.12 SIDE_CHAIN REMARK 500 19 DG A 11 0.07 SIDE_CHAIN REMARK 500 19 DG B 15 0.12 SIDE_CHAIN REMARK 500 19 DT B 17 0.09 SIDE_CHAIN REMARK 500 19 DT B 18 0.10 SIDE_CHAIN REMARK 500 19 DT B 19 0.11 SIDE_CHAIN REMARK 500 19 DC B 20 0.08 SIDE_CHAIN REMARK 500 19 DT B 22 0.14 SIDE_CHAIN REMARK 500 19 DT B 23 0.10 SIDE_CHAIN REMARK 500 19 DC B 26 0.09 SIDE_CHAIN REMARK 500 20 DG A 1 0.13 SIDE_CHAIN REMARK 500 20 DC A 2 0.14 SIDE_CHAIN REMARK 500 20 DA A 4 0.18 SIDE_CHAIN REMARK 500 20 DG A 6 0.06 SIDE_CHAIN REMARK 500 20 DA A 8 0.07 SIDE_CHAIN REMARK 500 20 DG A 11 0.11 SIDE_CHAIN REMARK 500 20 DC A 12 0.12 SIDE_CHAIN REMARK 500 20 DG B 14 0.07 SIDE_CHAIN REMARK 500 20 DG B 15 0.08 SIDE_CHAIN REMARK 500 20 DT B 17 0.15 SIDE_CHAIN REMARK 500 20 DT B 18 0.10 SIDE_CHAIN REMARK 500 20 DC B 20 0.08 SIDE_CHAIN REMARK 500 20 DC B 21 0.11 SIDE_CHAIN REMARK 500 20 DT B 22 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N14 RELATED DB: PDB REMARK 900 1N14 IS UNMODIFIED GC DUPLEX DNA
DBREF 1N17 A 1 13 PDB 1N17 1N17 1 13 DBREF 1N17 B 14 26 PDB 1N17 1N17 14 26
SEQRES 1 A 13 DG DC DT DA DA DG S6G DA DA DA DG DC DC SEQRES 1 B 13 DG DG DC DT DT DT DC DC DT DT DA DG DC
MODRES 1N17 S6G A 7 DG
HET S6G A 7 33
HETNAM S6G 6-THIO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
FORMUL 1 S6G C10 H14 N5 O6 P S
LINK O3' DG A 6 P S6G A 7 1555 1555 1.62 LINK O3' S6G A 7 P DA A 8 1555 1555 1.60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000