1MY9 - Header Asymmetric Unit

HEADER RNA 04-OCT-02 1MY9

TITLE SOLUTION STRUCTURE OF A K+ CATION STABILIZED DIMERIC RNA TITLE 2 QUADRUPLEX CONTAINING TWO G:G(:A):G:G(:A) HEXADS, G:G:G:G TITLE 3 TETRADS AND UUUU LOOPS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*GP*AP*GP*GP*UP*UP*UP*UP*GP*GP*AP*GP*G)- COMPND 3 3'; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: K+ CATION STABILIZED

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS PARALLEL RNA QUADRUPLEX WITH A LOOP, DIMER OF TWO KEYWDS 2 QUADRUPLEXES

EXPDTA SOLUTION NMR

AUTHOR H.LIU,A.MATSUGAMI,M.KATAHIRA,S.UESUGI

REVDAT 2 24-FEB-09 1MY9 1 VERSN REVDAT 1 07-OCT-03 1MY9 0

JRNL AUTH H.LIU,A.MATSUGAMI,M.KATAHIRA,S.UESUGI JRNL TITL A DIMERIC RNA QUADRUPLEX ARCHITECTURE COMPRISED OF JRNL TITL 2 TWO G:G(:A):G:G(:A) HEXADS, G:G:G:G TETRADS AND JRNL TITL 3 UUUU LOOPS JRNL REF J.MOL.BIOL. V. 322 955 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12367521 JRNL DOI 10.1016/S0022-2836(02)00876-8

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1MY9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-02. REMARK 100 THE RCSB ID CODE IS RCSB017306.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 305.5 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 16 MM KCL; 16 MM KCL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.6 MM RNA, 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER (PH 6.5), 16 REMARK 210 MM KCL; 1.6 MM RNA, 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER (PH REMARK 210 6.5), 16 MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 A A 3 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 5 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 5 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 10 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 10 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 A A 12 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 G A 13 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 13 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G B 15 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G B 15 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G B 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G B 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 A B 17 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 A B 17 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G B 18 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G B 18 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G B 19 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G B 19 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G B 24 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G B 24 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 G B 25 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G B 25 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 A B 26 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 A B 26 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 G B 27 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G B 27 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G B 28 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G B 28 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL

DBREF 1MY9 A 1 14 PDB 1MY9 1MY9 1 14 DBREF 1MY9 B 15 28 PDB 1MY9 1MY9 15 28

SEQRES 1 A 14 G G A G G U U U U G G A G SEQRES 2 A 14 G SEQRES 1 B 14 G G A G G U U U U G G A G SEQRES 2 B 14 G

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000