10 20 30 40 50 60 70 80 1MX8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 01-OCT-02 1MX8
TITLE TWO HOMOLOGOUS RAT CELLULAR RETINOL-BINDING PROTEINS DIFFER TITLE 2 IN LOCAL STRUCTURE AND FLEXIBILITY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR RETINOL-BINDING PROTEIN I, HOLO; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RETINOL BINDING PROTEIN -I (CELLULAR), CRBP; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RBP1 OR RBP-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMON CRBP I
KEYWDS BETA-BARREL, HELIX-TURN-HELIX, VITAMIN A, RETONOL BINDING, KEYWDS 2 TRANSPORT, LIPID BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 25
MDLTYP MINIMIZED AVERAGE
AUTHOR J.LU,D.P.CISTOLA,E.LI
REVDAT 3 24-FEB-09 1MX8 1 VERSN REVDAT 2 02-DEC-03 1MX8 1 DBREF REVDAT 1 29-JUL-03 1MX8 0
JRNL AUTH J.LU,D.P.CISTOLA,E.LI JRNL TITL TWO HOMOLOGOUS RAT CELLULAR RETINOL-BINDING JRNL TITL 2 PROTEINS DIFFER IN LOCAL CONFORMATIONAL JRNL TITL 3 FLEXIBILITY. JRNL REF J.MOL.BIOL. V. 330 799 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12850148 JRNL DOI 10.1016/S0022-2836(03)00629-6
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.LU,C.L.LIN,C.TANG,J.W.PONDER,J.L.KAO,D.P.CISTOLA, REMARK 1 AUTH 2 E.LI REMARK 1 TITL BINDING OF RETINOL INDUCES CHANGES IN RAT CELLULAR REMARK 1 TITL 2 RETINOL-BINDING PROTEIN II CONFORMATION AND REMARK 1 TITL 3 BACKBONE DYNAMICS REMARK 1 REF J.MOL.BIOL. V. 300 619 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.3883 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.LU,C.L.LIN,C.TANG,J.W.PONDER,J.L.F.KAO, REMARK 1 AUTH 2 D.P.CISTOLA,E.LI REMARK 1 TITL THE STRUCTURE AND DYNAMICS OF RAT APO-CELLULAR REMARK 1 TITL 2 RETINOL-BINDING PROTEIN II IN SOLUTION: COMPARISON REMARK 1 TITL 3 WITH THE X-RAY STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 286 1179 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1999.2544 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.W.COWAN,M.E.NEWCOMER,T.A.JONES REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES ON A FAMILY OF CELLULAR REMARK 1 TITL 2 LIPOPHILIC TRANSPORT PROTEINS. REFINEMENT OF P2 REMARK 1 TITL 3 MYELIN PROTEIN AND THE STRUCTURE DETERMINATION AND REMARK 1 TITL 4 REFINEMENT OF CELLULAR RETINOL-BINDING PROTEIN IN REMARK 1 TITL 5 COMPLEX WITH ALL-TRANS-RETINOL REMARK 1 REF J.MOL.BIOL. V. 230 1225 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1993.1238 REMARK 1 REFERENCE 4 REMARK 1 AUTH N.S.WINTER,J.M.BRATT,L.J.BANASZAK REMARK 1 TITL CRYSTAL STRUCTURES OF HOLO AND APO-CELLULAR REMARK 1 TITL 2 RETINOL-BINDING PROTEIN II REMARK 1 REF J.MOL.BIOL. V. 230 1247 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1993.1239 REMARK 1 REFERENCE 5 REMARK 1 AUTH L.FRANZONI,C.LUCKE,C.PEREZ,D.CAVAZZINI, REMARK 1 AUTH 2 M.RADEMACHER,C.LUDWIG,A.SPISNI,G.L.ROSSI, REMARK 1 AUTH 3 H.RUTERJANS REMARK 1 TITL STRUCTURE AND BACKBONE DYNAMICS OF APO- AND REMARK 1 TITL 2 HOLO-CELLULAR RETINAL-BINDING PROTEIN IN SOLUTION REMARK 1 REF J.BIOL.CHEM. V. 277 21983 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.M201994200
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TINKER 3.3 REMARK 3 AUTHORS : PONDER, J.W. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MX8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-02. REMARK 100 THE RCSB ID CODE IS RCSB017273.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.4; 6.5 REMARK 210 IONIC STRENGTH : 0.34; 0.34 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM CELLULAR RETINOL- REMARK 210 BINDING PROTEIN I U-[99% 15N, REMARK 210 99% 13C] IN COMPLEX WITH ALL- REMARK 210 TRANS RETINOL (NATURAL ISOTOPE REMARK 210 ABUNDANCE); 20MM PHOSPHATE REMARK 210 BUFFER, 50MM POTASSIUM REMARK 210 CHLORIDE, 0.05% SUDIUM AZIDE, REMARK 210 5MM BETA-MECAPTOETHANOL-D6; REMARK 210 95% H2O, 5% D2O; 1.0MM REMARK 210 CELLULAR RETINOL-BINDING REMARK 210 PROTEIN I U-[99% 15N, 80% 2H] REMARK 210 IN COMPLEX WITH ALL-TRANS REMARK 210 RETINOL (NATURAL ISOTOPE REMARK 210 ABUNDANCE); 20MM PHOSPHATE REMARK 210 BUFFER, 50MM POTASSIUM REMARK 210 CHLORIDE, 0.05% SUDIUM AZIDE, REMARK 210 5MM BETA-MECAPTOETHANOL-D6; REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, FELIX 2000, TINKER REMARK 210 3.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: TRIPLE RESONANCE EXPERIMENTS FOR THE 1H, 15N AND 13C REMARK 210 RESONANCE ASSIGNMENTS INCLUDED THE FOLLOWING: HNCO CBCACONNH REMARK 210 HNCACB CBCACOCAHA HCCH-TOCSY 15N-RESOLVED TOCSY-HSQC; THE REMARK 210 INTRA-LIGAND NOE CONSTRAINTS AS WELL AS LIGAND-PROTEIN NOE REMARK 210 CONSTRAINTS WERE OBTAINED FROM 2D 13C AND 15N DOUBLE HALF- REMARK 210 FILTERED EXPERIMENT
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 12 TRP A 88 CE2 TRP A 88 CD2 -0.073 REMARK 500 20 TRP A 106 CE2 TRP A 106 CD2 -0.072 REMARK 500 21 TRP A 106 CE2 TRP A 106 CD2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 7 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 TYR A 7 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 TRP A 8 CG - CD2 - CE3 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 2 TRP A 8 CE2 - CD2 - CG ANGL. DEV. = 5.1 DEGREES REMARK 500 2 TRP A 8 CG - CD2 - CE3 ANGL. DEV. = -5.7 DEGREES REMARK 500 2 GLU A 18 OE1 - CD - OE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 2 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 2 TYR A 60 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 3 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 PHE A 64 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 4 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 TRP A 8 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 5 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 6 TYR A 19 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 6 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 7 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 7 ARG A 30 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 7 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 120 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 8 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 8 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 TRP A 8 CG - CD2 - CE3 ANGL. DEV. = -5.6 DEGREES REMARK 500 10 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 10 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 TYR A 19 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 11 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 11 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 TRP A 106 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 11 GLU A 111 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 12 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 12 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 12 TRP A 109 CE2 - CD2 - CG ANGL. DEV. = 5.6 DEGREES REMARK 500 13 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 13 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 13 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 106 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 87.46 -55.04 REMARK 500 1 ASN A 15 32.34 -144.40 REMARK 500 1 ASN A 26 160.73 -49.38 REMARK 500 1 LYS A 37 76.15 -167.19 REMARK 500 1 ASP A 45 72.41 -160.60 REMARK 500 1 ILE A 77 -69.66 -100.45 REMARK 500 1 ASP A 78 22.18 -149.14 REMARK 500 1 ASP A 79 78.75 52.20 REMARK 500 1 LYS A 98 49.46 -94.43 REMARK 500 1 LYS A 101 -171.27 69.44 REMARK 500 1 ARG A 104 93.96 -50.42 REMARK 500 1 TRP A 109 108.19 -169.23 REMARK 500 1 ALA A 121 116.23 -161.97 REMARK 500 2 LEU A 11 -67.14 -106.65 REMARK 500 2 GLU A 14 -48.56 -139.43 REMARK 500 2 ASP A 47 31.29 71.28 REMARK 500 2 SER A 55 -28.55 -162.81 REMARK 500 2 THR A 56 -15.49 94.18 REMARK 500 2 ARG A 58 132.25 -177.75 REMARK 500 2 ASP A 73 99.05 -63.78 REMARK 500 2 ILE A 77 -72.04 -154.22 REMARK 500 2 LYS A 98 -89.55 -88.65 REMARK 500 2 GLU A 100 66.40 -155.68 REMARK 500 2 ARG A 104 91.49 54.63 REMARK 500 2 TRP A 109 79.24 -169.13 REMARK 500 2 ALA A 121 111.11 -165.52 REMARK 500 3 LEU A 11 -56.53 -136.17 REMARK 500 3 GLU A 14 -58.03 -141.64 REMARK 500 3 ASP A 24 61.78 76.57 REMARK 500 3 PRO A 38 -179.11 -59.97 REMARK 500 3 ARG A 58 144.98 -170.17 REMARK 500 3 ASP A 63 57.22 -90.53 REMARK 500 3 ILE A 77 -85.23 -112.77 REMARK 500 3 ASP A 79 89.09 40.94 REMARK 500 3 ARG A 80 46.44 -152.68 REMARK 500 3 LYS A 81 120.32 -39.56 REMARK 500 3 ASP A 89 57.43 -147.66 REMARK 500 3 LYS A 98 58.35 -143.24 REMARK 500 3 GLU A 100 -159.56 63.04 REMARK 500 3 LYS A 101 -175.44 68.37 REMARK 500 3 GLU A 102 101.15 -164.01 REMARK 500 3 TRP A 109 -62.02 -140.06 REMARK 500 3 ILE A 110 142.08 70.26 REMARK 500 3 ASP A 113 69.66 -154.17 REMARK 500 3 GLU A 114 130.49 164.60 REMARK 500 3 ALA A 121 128.65 -170.06 REMARK 500 3 VAL A 133 -71.91 -115.22 REMARK 500 4 MET A 10 168.77 -49.53 REMARK 500 4 LEU A 11 -56.62 -142.51 REMARK 500 4 SER A 12 147.79 -170.70 REMARK 500 4 ASP A 24 43.01 35.62 REMARK 500 4 ASN A 26 153.05 -45.99 REMARK 500 4 PRO A 38 -171.86 -67.76 REMARK 500 4 HIS A 48 80.06 158.80 REMARK 500 4 PHE A 57 -68.50 -127.48 REMARK 500 4 ASN A 59 93.73 -31.56 REMARK 500 4 THR A 75 99.48 -58.75 REMARK 500 4 ILE A 77 -65.59 -106.91 REMARK 500 4 ASP A 79 90.45 48.43 REMARK 500 4 ARG A 80 123.25 -177.25 REMARK 500 4 THR A 107 117.55 -160.54 REMARK 500 4 ASP A 113 71.54 -114.71 REMARK 500 4 GLU A 114 140.66 172.69 REMARK 500 5 LEU A 11 -60.74 -94.98 REMARK 500 5 GLU A 14 114.84 -173.70 REMARK 500 5 ASN A 26 153.82 -45.44 REMARK 500 5 LYS A 37 68.13 175.94 REMARK 500 5 PRO A 38 170.60 -56.23 REMARK 500 5 ASP A 45 66.15 -156.23 REMARK 500 5 ASP A 47 -58.78 72.85 REMARK 500 5 MET A 49 89.81 -152.90 REMARK 500 5 GLN A 65 99.06 60.36 REMARK 500 5 GLU A 71 77.77 -116.83 REMARK 500 5 ILE A 77 -68.68 -101.70 REMARK 500 5 LYS A 81 133.03 -176.81 REMARK 500 5 ALA A 121 133.70 165.40 REMARK 500 5 VAL A 133 -52.61 -134.16 REMARK 500 6 SER A 12 -179.00 -171.57 REMARK 500 6 ASP A 47 -66.13 70.56 REMARK 500 6 PHE A 57 -71.45 -143.85 REMARK 500 6 ASN A 59 172.74 62.30 REMARK 500 6 TYR A 60 105.71 177.30 REMARK 500 6 LEU A 74 56.90 -113.32 REMARK 500 6 ILE A 77 -61.71 -132.51 REMARK 500 6 ASP A 78 15.30 -143.97 REMARK 500 6 ASP A 79 87.97 37.16 REMARK 500 6 LYS A 81 107.34 68.99 REMARK 500 6 ASP A 91 -74.44 66.89 REMARK 500 6 ARG A 104 69.95 25.72 REMARK 500 6 TRP A 109 96.53 -161.42 REMARK 500 6 GLU A 111 97.43 -160.20 REMARK 500 6 ALA A 121 105.90 -167.59 REMARK 500 6 LYS A 132 108.42 -55.25 REMARK 500 7 VAL A 2 104.78 -31.73 REMARK 500 7 MET A 10 179.99 -55.11 REMARK 500 7 LEU A 11 -51.98 -162.37 REMARK 500 7 THR A 56 -61.58 72.48 REMARK 500 7 LEU A 74 62.05 -102.94 REMARK 500 7 ILE A 77 -60.40 -151.06 REMARK 500 7 ASP A 79 95.24 51.59 REMARK 500 7 ARG A 80 128.08 178.08 REMARK 500 7 ASP A 89 -57.53 -123.57 REMARK 500 7 LYS A 101 179.11 68.92 REMARK 500 7 ARG A 104 130.33 -39.89 REMARK 500 7 TRP A 109 119.69 -170.06 REMARK 500 7 ALA A 121 121.90 -176.27 REMARK 500 8 VAL A 2 23.89 -144.74 REMARK 500 8 ASP A 3 104.27 -39.97 REMARK 500 8 GLU A 14 -53.48 -147.92 REMARK 500 8 ASP A 24 84.31 58.97 REMARK 500 8 LYS A 37 63.25 -152.72 REMARK 500 8 ASP A 45 75.79 -151.98 REMARK 500 8 ASP A 47 49.78 -104.06 REMARK 500 8 HIS A 48 111.11 -175.42 REMARK 500 8 THR A 56 9.61 93.87 REMARK 500 8 ARG A 58 49.38 -156.20 REMARK 500 8 ASN A 59 107.24 -10.57 REMARK 500 8 LEU A 74 37.23 -97.04 REMARK 500 8 ILE A 77 -60.84 -134.75 REMARK 500 8 ASP A 78 20.72 -156.81 REMARK 500 8 ASP A 79 81.47 37.92 REMARK 500 8 LYS A 81 107.22 72.99 REMARK 500 8 GLU A 100 83.71 45.28 REMARK 500 8 GLU A 114 93.88 -171.84 REMARK 500 8 ALA A 121 128.47 162.09 REMARK 500 8 VAL A 133 -54.34 -136.03 REMARK 500 9 LEU A 11 -48.55 -130.28 REMARK 500 9 ASN A 13 -165.90 -116.11 REMARK 500 9 GLU A 14 -54.84 -162.30 REMARK 500 9 ASN A 15 25.24 -141.32 REMARK 500 9 ASN A 26 140.94 -35.86 REMARK 500 9 ASP A 45 46.76 -144.35 REMARK 500 9 MET A 49 104.57 -165.35 REMARK 500 9 ARG A 58 134.99 -179.95 REMARK 500 9 ASP A 73 96.65 -54.18 REMARK 500 9 LEU A 74 47.33 -101.00 REMARK 500 9 ILE A 77 -74.08 -127.96 REMARK 500 9 ASP A 79 70.26 28.97 REMARK 500 9 LYS A 81 115.93 -31.38 REMARK 500 9 ASP A 91 -86.41 62.22 REMARK 500 9 LYS A 98 -71.47 -111.63 REMARK 500 9 ARG A 104 92.24 48.43 REMARK 500 9 TRP A 109 109.28 -162.23 REMARK 500 9 GLU A 118 77.33 -108.82 REMARK 500 9 ALA A 121 122.24 -179.13 REMARK 500 10 ASP A 3 99.67 58.19 REMARK 500 10 LEU A 11 -52.76 -120.72 REMARK 500 10 GLU A 14 -57.18 -146.23 REMARK 500 10 ASN A 26 157.28 -48.61 REMARK 500 10 ARG A 58 105.07 -168.51 REMARK 500 10 LEU A 74 48.37 -105.13 REMARK 500 10 ILE A 77 -63.43 -137.80 REMARK 500 10 ASP A 78 22.99 -153.89 REMARK 500 10 ASP A 79 90.70 39.88 REMARK 500 10 ARG A 80 -61.69 -129.75 REMARK 500 10 LYS A 81 103.96 67.19 REMARK 500 10 ASP A 89 44.12 30.97 REMARK 500 10 ASP A 91 121.78 153.38 REMARK 500 10 LYS A 92 115.92 75.03 REMARK 500 10 GLU A 100 85.28 -56.20 REMARK 500 10 ARG A 104 94.19 -31.20 REMARK 500 10 ASP A 113 74.02 62.19 REMARK 500 10 GLU A 114 136.64 173.18 REMARK 500 10 ALA A 121 117.37 -171.39 REMARK 500 11 LEU A 11 -58.11 -138.35 REMARK 500 11 ASN A 13 93.35 -175.44 REMARK 500 11 VAL A 25 -74.74 -57.72 REMARK 500 11 ASN A 26 150.52 172.16 REMARK 500 11 LYS A 37 80.07 -151.52 REMARK 500 11 MET A 49 84.12 -155.41 REMARK 500 11 THR A 56 -35.91 -33.24 REMARK 500 11 TYR A 60 89.97 -163.27 REMARK 500 11 ILE A 77 -74.78 -114.31 REMARK 500 11 ASP A 78 20.49 -143.77 REMARK 500 11 ASP A 79 76.90 36.31 REMARK 500 11 LYS A 81 85.22 71.69 REMARK 500 11 LYS A 92 143.04 -172.85 REMARK 500 11 GLN A 97 79.86 -104.75 REMARK 500 11 LYS A 98 94.79 -41.51 REMARK 500 11 GLU A 100 46.11 -142.47 REMARK 500 11 LYS A 101 -89.34 -124.71 REMARK 500 11 GLU A 102 136.26 171.53 REMARK 500 11 GLU A 114 146.04 177.12 REMARK 500 11 GLU A 118 73.18 -118.91 REMARK 500 11 ALA A 121 118.44 -160.78 REMARK 500 11 GLU A 122 19.93 52.04 REMARK 500 11 LYS A 132 104.62 -55.10 REMARK 500 12 ASP A 3 95.41 50.02 REMARK 500 12 MET A 10 159.76 -49.94 REMARK 500 12 LEU A 11 -54.12 -138.19 REMARK 500 12 GLU A 14 123.64 -170.87 REMARK 500 12 ASN A 15 30.14 70.07 REMARK 500 12 VAL A 25 -72.37 -59.69 REMARK 500 12 ASN A 26 155.90 172.83 REMARK 500 12 MET A 49 77.29 -168.46 REMARK 500 12 PHE A 57 -60.40 -140.06 REMARK 500 12 PHE A 64 167.58 62.57 REMARK 500 12 GLN A 65 85.39 -165.79 REMARK 500 12 LEU A 74 58.46 -96.76 REMARK 500 12 ILE A 77 -79.95 -98.18 REMARK 500 12 ASP A 79 72.18 63.03 REMARK 500 12 ARG A 80 139.88 -177.07 REMARK 500 12 ASP A 89 50.80 -98.47 REMARK 500 12 GLU A 100 36.91 -168.64 REMARK 500 12 ARG A 104 86.27 48.57 REMARK 500 12 GLU A 111 -97.72 -110.07 REMARK 500 12 ALA A 121 132.34 -175.72 REMARK 500 13 LYS A 9 -122.85 -120.11 REMARK 500 13 GLU A 14 -44.15 -150.08 REMARK 500 13 PRO A 38 -171.67 -68.17 REMARK 500 13 MET A 49 73.39 -155.60 REMARK 500 13 LEU A 74 47.53 -105.53 REMARK 500 13 ILE A 77 -86.55 -105.40 REMARK 500 13 LYS A 81 105.79 25.43 REMARK 500 13 LYS A 92 134.52 173.36 REMARK 500 13 TRP A 109 140.96 179.50 REMARK 500 13 GLU A 114 118.52 -163.46 REMARK 500 13 ALA A 121 123.83 -178.54 REMARK 500 14 ASP A 3 113.12 -20.76 REMARK 500 14 ASN A 5 109.73 -49.99 REMARK 500 14 LYS A 37 69.44 171.25 REMARK 500 14 ASP A 47 -17.44 86.74 REMARK 500 14 HIS A 48 -166.47 -114.36 REMARK 500 14 MET A 49 133.67 -171.57 REMARK 500 14 ASP A 79 93.92 85.76 REMARK 500 14 ARG A 80 -55.27 -123.31 REMARK 500 14 LYS A 81 111.11 71.93 REMARK 500 14 LYS A 98 69.91 -107.80 REMARK 500 14 GLU A 100 -169.52 53.47 REMARK 500 14 LYS A 101 179.15 59.64 REMARK 500 14 ASP A 113 -33.38 159.38 REMARK 500 14 ALA A 121 138.55 175.78 REMARK 500 15 GLU A 14 -45.74 -136.28 REMARK 500 15 ASN A 15 39.41 -145.75 REMARK 500 15 ASN A 26 158.00 -49.59 REMARK 500 15 LEU A 36 -75.76 -91.74 REMARK 500 15 LYS A 37 72.29 49.07 REMARK 500 15 MET A 49 79.92 -150.89 REMARK 500 15 SER A 55 -46.68 -139.75 REMARK 500 15 THR A 56 -7.75 117.34 REMARK 500 15 ASP A 73 94.22 -64.69 REMARK 500 15 ILE A 77 -60.65 -108.09 REMARK 500 15 ASP A 79 38.96 71.45 REMARK 500 15 ASP A 91 -11.90 106.50 REMARK 500 15 LYS A 101 -165.24 -113.43 REMARK 500 15 GLU A 111 -137.48 -120.63 REMARK 500 15 ALA A 121 130.92 -179.34 REMARK 500 16 LEU A 11 -53.21 -152.69 REMARK 500 16 ASP A 24 71.79 45.37 REMARK 500 16 LEU A 35 42.65 -104.02 REMARK 500 16 LEU A 36 -72.16 -131.53 REMARK 500 16 LYS A 37 70.86 51.90 REMARK 500 16 MET A 49 78.59 -150.03 REMARK 500 16 ASP A 63 46.90 -140.07 REMARK 500 16 PHE A 64 105.81 -45.70 REMARK 500 16 LEU A 74 58.54 -96.33 REMARK 500 16 ASP A 78 11.66 -143.96 REMARK 500 16 ASP A 79 72.99 55.74 REMARK 500 16 TRP A 88 94.03 70.93 REMARK 500 16 ASP A 91 -47.57 136.20 REMARK 500 16 GLU A 100 37.09 -167.02 REMARK 500 16 GLU A 102 -71.55 -74.80 REMARK 500 16 ARG A 104 71.97 -10.83 REMARK 500 16 ALA A 121 117.99 -174.80 REMARK 500 16 VAL A 129 79.80 -101.88 REMARK 500 16 VAL A 133 -61.10 -98.61 REMARK 500 17 ASP A 3 126.90 168.19 REMARK 500 17 LEU A 11 -57.16 -146.03 REMARK 500 17 ASP A 45 67.15 -154.62 REMARK 500 17 ILE A 50 102.89 -52.67 REMARK 500 17 ASP A 63 54.92 -113.73 REMARK 500 17 PHE A 64 137.16 -35.52 REMARK 500 17 GLU A 69 152.43 -49.15 REMARK 500 17 LEU A 74 57.89 -106.11 REMARK 500 17 ILE A 77 -65.39 -127.05 REMARK 500 17 ASP A 78 12.28 -142.47 REMARK 500 17 ASP A 79 97.12 43.00 REMARK 500 17 LYS A 81 101.87 61.20 REMARK 500 17 GLU A 102 136.40 70.78 REMARK 500 17 GLU A 111 47.98 -106.64 REMARK 500 17 ASP A 113 36.32 70.41 REMARK 500 17 GLU A 114 102.20 -160.18 REMARK 500 17 ALA A 121 140.10 173.41 REMARK 500 18 ASN A 5 88.83 -51.24 REMARK 500 18 MET A 10 -178.47 -49.82 REMARK 500 18 LEU A 11 -61.78 -158.17 REMARK 500 18 SER A 12 148.06 -179.09 REMARK 500 18 ASP A 24 75.54 51.90 REMARK 500 18 LEU A 36 -74.42 -82.85 REMARK 500 18 LYS A 37 71.18 53.37 REMARK 500 18 LEU A 54 76.71 -111.26 REMARK 500 18 PHE A 57 -68.21 -141.66 REMARK 500 18 ASN A 59 106.59 -54.07 REMARK 500 18 GLU A 69 132.68 86.99 REMARK 500 18 LEU A 74 53.22 -96.01 REMARK 500 18 ILE A 77 -70.43 -117.96 REMARK 500 18 ASP A 78 27.41 -150.03 REMARK 500 18 ASP A 79 92.87 35.07 REMARK 500 18 ASP A 89 -66.85 -2.06 REMARK 500 18 LYS A 98 51.54 -93.61 REMARK 500 18 LYS A 101 136.70 105.88 REMARK 500 18 ARG A 104 130.50 -34.53 REMARK 500 18 TRP A 106 177.80 -59.58 REMARK 500 18 THR A 107 129.21 179.92 REMARK 500 18 ALA A 121 103.09 -166.57 REMARK 500 19 VAL A 2 -31.77 -135.85 REMARK 500 19 VAL A 25 -72.12 -50.46 REMARK 500 19 ASN A 26 148.87 174.19 REMARK 500 19 PRO A 38 179.17 -56.58 REMARK 500 19 ASP A 45 74.81 -167.01 REMARK 500 19 ARG A 58 121.74 172.81 REMARK 500 19 TYR A 60 -138.08 -100.31 REMARK 500 19 ILE A 61 139.18 127.12 REMARK 500 19 THR A 75 107.89 -40.40 REMARK 500 19 ASP A 79 73.09 50.35 REMARK 500 19 ASP A 89 46.63 -154.95 REMARK 500 19 LYS A 101 176.72 87.74 REMARK 500 19 ARG A 104 97.30 15.91 REMARK 500 20 ASN A 26 158.24 -48.85 REMARK 500 20 THR A 56 -7.93 92.94 REMARK 500 20 ARG A 58 -26.57 173.89 REMARK 500 20 ASN A 59 153.48 77.56 REMARK 500 20 TYR A 60 101.19 -170.16 REMARK 500 20 MET A 62 -69.17 -147.21 REMARK 500 20 ASP A 63 104.31 76.71 REMARK 500 20 GLU A 72 51.81 -118.60 REMARK 500 20 ILE A 77 -70.16 -117.84 REMARK 500 20 ASP A 79 85.49 41.20 REMARK 500 20 LYS A 92 92.79 -162.58 REMARK 500 20 LYS A 98 -38.28 -36.80 REMARK 500 20 GLU A 100 -46.39 -174.97 REMARK 500 20 TRP A 109 -63.85 -163.81 REMARK 500 20 ILE A 110 106.93 70.81 REMARK 500 20 ASP A 113 35.16 75.61 REMARK 500 20 GLU A 114 126.52 154.94 REMARK 500 20 ALA A 121 122.22 173.85 REMARK 500 21 ASN A 15 41.19 -152.19 REMARK 500 21 ASN A 26 161.18 -46.58 REMARK 500 21 LYS A 37 86.06 -153.77 REMARK 500 21 GLU A 41 89.50 -151.64 REMARK 500 21 ASP A 45 -71.91 -110.48 REMARK 500 21 ASP A 47 17.59 82.21 REMARK 500 21 ARG A 58 156.07 175.70 REMARK 500 21 MET A 62 129.30 177.46 REMARK 500 21 LEU A 74 56.23 -94.05 REMARK 500 21 ASP A 79 79.21 80.25 REMARK 500 21 GLU A 100 -41.85 175.02 REMARK 500 22 LYS A 9 157.53 173.93 REMARK 500 22 MET A 10 86.67 65.98 REMARK 500 22 SER A 12 94.93 -48.74 REMARK 500 22 ASN A 26 134.67 -34.45 REMARK 500 22 PRO A 38 -168.13 -112.25 REMARK 500 22 HIS A 48 129.11 -170.59 REMARK 500 22 LEU A 54 64.38 -112.23 REMARK 500 22 ARG A 58 -32.27 170.67 REMARK 500 22 ASN A 59 99.88 71.63 REMARK 500 22 PHE A 64 110.33 -27.34 REMARK 500 22 GLU A 69 106.17 78.52 REMARK 500 22 LEU A 74 61.47 -102.31 REMARK 500 22 ASP A 79 75.75 45.08 REMARK 500 22 GLU A 100 -45.11 -161.03 REMARK 500 22 LYS A 101 -98.68 -67.50 REMARK 500 22 ALA A 121 116.49 179.82 REMARK 500 23 ASN A 26 154.37 -47.42 REMARK 500 23 THR A 56 -62.48 79.07 REMARK 500 23 VAL A 66 107.19 -40.42 REMARK 500 23 LEU A 74 54.55 -102.28 REMARK 500 23 ILE A 77 -66.45 -133.93 REMARK 500 23 ASP A 78 53.69 -165.16 REMARK 500 23 ASP A 79 75.08 11.91 REMARK 500 23 LYS A 98 -174.59 -67.77 REMARK 500 23 LYS A 101 -144.55 -131.47 REMARK 500 23 ARG A 104 89.91 27.02 REMARK 500 23 TRP A 109 99.12 -166.05 REMARK 500 23 LEU A 115 47.92 -102.98 REMARK 500 23 HIS A 116 124.41 -23.55 REMARK 500 24 VAL A 2 82.99 31.00 REMARK 500 24 LEU A 11 -58.87 -142.29 REMARK 500 24 GLU A 14 106.16 -175.83 REMARK 500 24 THR A 53 83.28 -163.67 REMARK 500 24 PHE A 57 -39.46 173.27 REMARK 500 24 ARG A 58 90.62 -164.72 REMARK 500 24 TYR A 60 -74.29 -91.94 REMARK 500 24 ILE A 61 161.84 55.82 REMARK 500 24 MET A 62 136.57 176.37 REMARK 500 24 LEU A 74 55.87 -109.45 REMARK 500 24 ASP A 78 29.01 -166.20 REMARK 500 24 ASP A 79 86.52 22.91 REMARK 500 24 ARG A 80 52.93 -140.68 REMARK 500 24 LYS A 98 44.05 -107.57 REMARK 500 24 THR A 107 118.90 -163.91 REMARK 500 24 TRP A 109 -53.01 -148.08 REMARK 500 24 ILE A 110 145.69 73.91 REMARK 500 24 GLU A 111 80.07 -155.26 REMARK 500 24 ALA A 121 114.72 179.27 REMARK 500 24 LYS A 131 86.46 -155.12 REMARK 500 24 LYS A 132 -147.37 -68.62 REMARK 500 24 VAL A 133 -49.08 -150.09 REMARK 500 25 VAL A 2 -50.72 -148.52 REMARK 500 25 ASP A 3 118.17 -29.97 REMARK 500 25 GLU A 14 109.58 -163.39 REMARK 500 25 GLN A 44 103.77 -51.87 REMARK 500 25 ASP A 45 74.31 -115.61 REMARK 500 25 THR A 53 86.20 -159.87 REMARK 500 25 TYR A 60 -72.47 -133.33 REMARK 500 25 ILE A 61 143.24 63.60 REMARK 500 25 MET A 62 -52.60 -129.11 REMARK 500 25 ASP A 63 61.56 65.13 REMARK 500 25 LEU A 74 46.37 -103.21 REMARK 500 25 ILE A 77 -63.49 -105.01 REMARK 500 25 ASP A 79 82.26 55.72 REMARK 500 25 LYS A 81 123.66 -171.74 REMARK 500 25 LYS A 98 74.83 -115.32 REMARK 500 25 LYS A 101 169.67 62.11 REMARK 500 25 GLU A 102 108.31 80.64 REMARK 500 25 ARG A 104 170.52 52.00 REMARK 500 25 TRP A 109 87.87 -152.82 REMARK 500 25 GLU A 111 78.33 -152.86 REMARK 500 25 GLU A 122 28.56 47.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL A 135
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MX7 RELATED DB: PDB REMARK 900 SAME PROTEIN, APO STRUCTURE
DBREF 1MX8 A 1 134 UNP P02696 RET1_RAT 2 135
SEQRES 1 A 134 PRO VAL ASP PHE ASN GLY TYR TRP LYS MET LEU SER ASN SEQRES 2 A 134 GLU ASN PHE GLU GLU TYR LEU ARG ALA LEU ASP VAL ASN SEQRES 3 A 134 VAL ALA LEU ARG LYS ILE ALA ASN LEU LEU LYS PRO ASP SEQRES 4 A 134 LYS GLU ILE VAL GLN ASP GLY ASP HIS MET ILE ILE ARG SEQRES 5 A 134 THR LEU SER THR PHE ARG ASN TYR ILE MET ASP PHE GLN SEQRES 6 A 134 VAL GLY LYS GLU PHE GLU GLU ASP LEU THR GLY ILE ASP SEQRES 7 A 134 ASP ARG LYS CYS MET THR THR VAL SER TRP ASP GLY ASP SEQRES 8 A 134 LYS LEU GLN CYS VAL GLN LYS GLY GLU LYS GLU GLY ARG SEQRES 9 A 134 GLY TRP THR GLN TRP ILE GLU GLY ASP GLU LEU HIS LEU SEQRES 10 A 134 GLU MET ARG ALA GLU GLY VAL THR CYS LYS GLN VAL PHE SEQRES 11 A 134 LYS LYS VAL HIS
HET RTL A 135 51
HETNAM RTL RETINOL
FORMUL 2 RTL C20 H30 O
HELIX 1 A1 PHE A 16 ALA A 22 1 7 HELIX 2 A2 VAL A 27 ASN A 34 1 8
SHEET 1 B1 4 TYR A 7 GLU A 14 0 SHEET 2 B1 4 LEU A 35 ASP A 45 -1 N LYS A 40 O TRP A 8 SHEET 3 B1 4 HIS A 48 SER A 55 -1 O ILE A 50 N VAL A 43 SHEET 4 B1 4 ASN A 59 GLN A 65 -1 N PHE A 64 O MET A 49 SHEET 1 B2 6 LYS A 68 ASP A 73 0 SHEET 2 B2 6 MET A 83 ASP A 89 -1 N THR A 84 O PHE A 70 SHEET 3 B2 6 LYS A 92 GLN A 97 -1 N GLN A 94 O SER A 87 SHEET 4 B2 6 ARG A 104 GLU A 111 -1 N GLN A 108 O LEU A 93 SHEET 5 B2 6 GLU A 114 ARG A 120 -1 N GLU A 118 O THR A 107 SHEET 6 B2 6 VAL A 124 LYS A 131 -1 N GLN A 128 O LEU A 117
SITE 1 AC1 4 LEU A 29 MET A 62 ILE A 77 TRP A 106
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000