10 20 30 40 50 60 70 80 1MUS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/DNA 24-SEP-02 1MUS
TITLE CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TITLE 2 RESOLVED OUTSIDE END DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TRANSFERRED STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA NON-TRANSFERRED STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TN5 TRANSPOSASE; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN THE TN5 SOURCE 4 TRANSPOSON; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: SEQUENCE OCCURS NATURALLY IN THE TN5 SOURCE 8 TRANSPOSON; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTYB1
KEYWDS TRANSPOSASE, HAIRPIN, DNA BINDING, TRANSCRIPTION/DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR H.M.HOLDEN,J.B.THODEN,M.STEINIGER-WHITE,W.S.REZNIKOFF, AUTHOR 2 S.LOVELL,I.RAYMENT
REVDAT 3 24-FEB-09 1MUS 1 VERSN REVDAT 2 01-APR-03 1MUS 1 JRNL AUTHOR REVDAT 1 27-SEP-02 1MUS 0
JRNL AUTH M.STEINIGER-WHITE,I.RAYMENT,W.S.REZNIKOFF JRNL TITL STRUCTURE/FUNCTION INSIGHTS INTO TN5 TRANSPOSITION. JRNL REF CURR.OPIN.STRUCT.BIOL. V. 14 50 2004 JRNL REFN ISSN 0959-440X JRNL PMID 15102449 JRNL DOI 10.1016/J.SBI.2004.01.008
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 60265 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5942 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1930 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1900 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5939 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 60265 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3611 REMARK 3 NUCLEIC ACID ATOMS : 818 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 615 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.380 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MUS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017199.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1F3I REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-1500, HEPES, MANGANESE REMARK 280 CHLORIDE, MAGNESIUM CHLORIDE, PH 7.5, BATCH, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.63333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 117.95000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.31667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 196.58333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.26667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.63333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.31667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 117.95000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 196.58333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER, THE OTHER HALF OF THE DIMER MAY BE GENERATED REMARK 300 BY USE OF THE FOLLOWING ROTATION MATRIX AND TRANSLATION VECTOR REMARK 300 ROTATION MATRIX: 0.50000 0.86603 0.00000 0.86603 -0.50000 REMARK 300 0.00000 0.00000 0.00000 -1.00000 TRANSLATION VECTOR IN AS - REMARK 300 0.00045 -0.00055 196.58308
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 196.58333
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 480 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 GLN A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 ARG A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 LEU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 GLU A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 GLU A 389
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 GLU A 394 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SD MET A 470 SD MET A 470 12555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 8 O3' DG B 8 C3' -0.050 REMARK 500 DA B 19 O3' DA B 19 C3' -0.042 REMARK 500 DG B 20 O3' DG B 20 C3' -0.040 REMARK 500 DC C 1 P DC C 1 OP3 -0.095 REMARK 500 DC C 5 O3' DC C 5 C3' -0.051 REMARK 500 GLU A 110 CD GLU A 110 OE2 0.066 REMARK 500 GLU A 190 CD GLU A 190 OE2 0.070 REMARK 500 GLU A 219 CD GLU A 219 OE2 0.072 REMARK 500 GLU A 304 CD GLU A 304 OE2 0.071 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.069 REMARK 500 GLU A 344 CD GLU A 344 OE2 0.078 REMARK 500 GLU A 454 CD GLU A 454 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 4 C4 - C5 - C7 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT B 4 C6 - C5 - C7 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT B 7 C6 - N1 - C1' ANGL. DEV. = -10.0 DEGREES REMARK 500 DT B 7 C2 - N1 - C1' ANGL. DEV. = 10.0 DEGREES REMARK 500 DT B 9 P - O5' - C5' ANGL. DEV. = -13.1 DEGREES REMARK 500 DT B 9 C5' - C4' - O4' ANGL. DEV. = -12.0 DEGREES REMARK 500 DA B 12 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG B 14 C8 - N9 - C1' ANGL. DEV. = 12.1 DEGREES REMARK 500 DG B 14 C4 - N9 - C1' ANGL. DEV. = -11.3 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA B 19 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG B 20 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DC C 1 OP1 - P - OP2 ANGL. DEV. = -13.7 DEGREES REMARK 500 DC C 1 O5' - C5' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 5 C6 - N1 - C2 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 7 C6 - N1 - C1' ANGL. DEV. = 8.9 DEGREES REMARK 500 DC C 7 C2 - N1 - C1' ANGL. DEV. = -8.7 DEGREES REMARK 500 DT C 9 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT C 9 N3 - C4 - O4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT C 9 C6 - N1 - C1' ANGL. DEV. = -9.2 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT C 11 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT C 11 C6 - N1 - C1' ANGL. DEV. = -9.6 DEGREES REMARK 500 DA C 12 C8 - N9 - C4 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 13 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 13 C6 - N1 - C1' ANGL. DEV. = -11.4 DEGREES REMARK 500 DC C 13 C2 - N1 - C1' ANGL. DEV. = 9.4 DEGREES REMARK 500 DC C 15 C6 - N1 - C1' ANGL. DEV. = 13.0 DEGREES REMARK 500 DC C 15 C2 - N1 - C1' ANGL. DEV. = -14.4 DEGREES REMARK 500 DA C 16 O4' - C1' - N9 ANGL. DEV. = -11.2 DEGREES REMARK 500 DC C 15 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DA C 17 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 20 C6 - N1 - C2 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 20 C6 - N1 - C1' ANGL. DEV. = 11.1 DEGREES REMARK 500 DC C 20 C2 - N1 - C1' ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP A 24 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -59.69 -143.54 REMARK 500 ASP A 24 119.05 -175.26 REMARK 500 TYR A 41 55.83 -100.87 REMARK 500 PRO A 290 159.01 -45.77 REMARK 500 LYS A 333 -88.79 -82.81 REMARK 500 LYS A 410 116.07 -33.79 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 59 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH C 67 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 923 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A 931 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH A 940 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A 963 DISTANCE = 5.38 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 478 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD2 REMARK 620 2 GLU A 326 OE1 95.4 REMARK 620 3 HOH B 21 O 93.4 85.3 REMARK 620 4 DG B 20 O3' 177.4 84.5 84.0 REMARK 620 5 DC C 1 OP1 95.5 161.2 109.4 85.4 REMARK 620 6 GLU A 326 OE2 87.7 58.5 143.6 94.5 106.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 479 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD1 REMARK 620 2 HOH A 485 O 82.6 REMARK 620 3 HOH A 486 O 99.7 91.3 REMARK 620 4 DC C 1 OP1 89.9 85.7 169.6 REMARK 620 5 DC C 1 OP2 154.9 97.1 105.4 65.2 REMARK 620 6 ASP A 188 OD2 86.6 169.1 92.3 92.5 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 480 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 974 O REMARK 620 2 SER A 181 OG 93.3 REMARK 620 3 SER A 178 O 80.4 83.6 REMARK 620 4 SER A 178 O 108.2 156.3 90.2 REMARK 620 5 HOH A 974 O 168.0 81.2 109.4 79.3 REMARK 620 6 SER A 181 OG 80.2 111.9 155.7 82.3 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 481 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 726 O REMARK 620 2 GLU A 451 OE1 84.2 REMARK 620 3 HOH A 730 O 80.3 146.0 REMARK 620 4 HOH A 765 O 146.4 74.0 131.0 REMARK 620 5 HOH A 794 O 81.8 80.6 67.4 118.3 REMARK 620 6 GLU A 454 OE1 79.2 105.6 100.9 82.5 159.2 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 478 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 479 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 480 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 481 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 482 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 483 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 484
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MUR RELATED DB: PDB
DBREF 1MUS A 1 476 UNP Q46731 Q46731_ECOLI 1 476 DBREF 1MUS B 1 20 PDB 1MUS 1MUS 1 20 DBREF 1MUS C 1 20 PDB 1MUS 1MUS 1 20
SEQADV 1MUS LYS A 54 UNP Q46731 GLU 54 ENGINEERED SEQADV 1MUS ALA A 56 UNP Q46731 MET 56 ENGINEERED SEQADV 1MUS LYS A 119 UNP Q46731 ASP 119 ENGINEERED SEQADV 1MUS ALA A 120 UNP Q46731 LYS 120 ENGINEERED SEQADV 1MUS LYS A 345 UNP Q46731 GLU 345 ENGINEERED SEQADV 1MUS PRO A 372 UNP Q46731 LEU 372 ENGINEERED SEQADV 1MUS GLY A 477 UNP Q46731 CLONING ARTIFACT
SEQRES 1 B 20 DG DA DC DT DT DG DT DG DT DA DT DA DA SEQRES 2 B 20 DG DA DG DT DC DA DG SEQRES 1 C 20 DC DT DG DA DC DT DC DT DT DA DT DA DC SEQRES 2 C 20 DA DC DA DA DG DT DC SEQRES 1 A 477 MET ILE THR SER ALA LEU HIS ARG ALA ALA ASP TRP ALA SEQRES 2 A 477 LYS SER VAL PHE SER SER ALA ALA LEU GLY ASP PRO ARG SEQRES 3 A 477 ARG THR ALA ARG LEU VAL ASN VAL ALA ALA GLN LEU ALA SEQRES 4 A 477 LYS TYR SER GLY LYS SER ILE THR ILE SER SER GLU GLY SEQRES 5 A 477 SER LYS ALA ALA GLN GLU GLY ALA TYR ARG PHE ILE ARG SEQRES 6 A 477 ASN PRO ASN VAL SER ALA GLU ALA ILE ARG LYS ALA GLY SEQRES 7 A 477 ALA MET GLN THR VAL LYS LEU ALA GLN GLU PHE PRO GLU SEQRES 8 A 477 LEU LEU ALA ILE GLU ASP THR THR SER LEU SER TYR ARG SEQRES 9 A 477 HIS GLN VAL ALA GLU GLU LEU GLY LYS LEU GLY SER ILE SEQRES 10 A 477 GLN LYS ALA SER ARG GLY TRP TRP VAL HIS SER VAL LEU SEQRES 11 A 477 LEU LEU GLU ALA THR THR PHE ARG THR VAL GLY LEU LEU SEQRES 12 A 477 HIS GLN GLU TRP TRP MET ARG PRO ASP ASP PRO ALA ASP SEQRES 13 A 477 ALA ASP GLU LYS GLU SER GLY LYS TRP LEU ALA ALA ALA SEQRES 14 A 477 ALA THR SER ARG LEU ARG MET GLY SER MET MET SER ASN SEQRES 15 A 477 VAL ILE ALA VAL CYS ASP ARG GLU ALA ASP ILE HIS ALA SEQRES 16 A 477 TYR LEU GLN ASP LYS LEU ALA HIS ASN GLU ARG PHE VAL SEQRES 17 A 477 VAL ARG SER LYS HIS PRO ARG LYS ASP VAL GLU SER GLY SEQRES 18 A 477 LEU TYR LEU TYR ASP HIS LEU LYS ASN GLN PRO GLU LEU SEQRES 19 A 477 GLY GLY TYR GLN ILE SER ILE PRO GLN LYS GLY VAL VAL SEQRES 20 A 477 ASP LYS ARG GLY LYS ARG LYS ASN ARG PRO ALA ARG LYS SEQRES 21 A 477 ALA SER LEU SER LEU ARG SER GLY ARG ILE THR LEU LYS SEQRES 22 A 477 GLN GLY ASN ILE THR LEU ASN ALA VAL LEU ALA GLU GLU SEQRES 23 A 477 ILE ASN PRO PRO LYS GLY GLU THR PRO LEU LYS TRP LEU SEQRES 24 A 477 LEU LEU THR SER GLU PRO VAL GLU SER LEU ALA GLN ALA SEQRES 25 A 477 LEU ARG VAL ILE ASP ILE TYR THR HIS ARG TRP ARG ILE SEQRES 26 A 477 GLU GLU PHE HIS LYS ALA TRP LYS THR GLY ALA GLY ALA SEQRES 27 A 477 GLU ARG GLN ARG MET GLU LYS PRO ASP ASN LEU GLU ARG SEQRES 28 A 477 MET VAL SER ILE LEU SER PHE VAL ALA VAL ARG LEU LEU SEQRES 29 A 477 GLN LEU ARG GLU SER PHE THR PRO PRO GLN ALA LEU ARG SEQRES 30 A 477 ALA GLN GLY LEU LEU LYS GLU ALA GLU HIS VAL GLU SER SEQRES 31 A 477 GLN SER ALA GLU THR VAL LEU THR PRO ASP GLU CYS GLN SEQRES 32 A 477 LEU LEU GLY TYR LEU ASP LYS GLY LYS ARG LYS ARG LYS SEQRES 33 A 477 GLU LYS ALA GLY SER LEU GLN TRP ALA TYR MET ALA ILE SEQRES 34 A 477 ALA ARG LEU GLY GLY PHE MET ASP SER LYS ARG THR GLY SEQRES 35 A 477 ILE ALA SER TRP GLY ALA LEU TRP GLU GLY TRP GLU ALA SEQRES 36 A 477 LEU GLN SER LYS LEU ASP GLY PHE LEU ALA ALA LYS ASP SEQRES 37 A 477 LEU MET ALA GLN GLY ILE LYS ILE GLY
HET MN A 478 1 HET MN A 479 1 HET MG A 480 1 HET MG A 481 1 HET EDO A 482 4 HET EDO A 483 4 HET EDO A 484 4
HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 4 MN 2(MN 2+) FORMUL 6 MG 2(MG 2+) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 11 HOH *615(H2 O)
HELIX 1 1 ARG A 8 SER A 18 1 11 HELIX 2 2 ASP A 24 TYR A 41 1 18 HELIX 3 3 SER A 45 SER A 50 1 6 HELIX 4 4 SER A 53 ARG A 65 1 13 HELIX 5 5 SER A 70 GLN A 87 1 18 HELIX 6 6 HIS A 105 LEU A 111 5 7 HELIX 7 7 ASP A 153 ALA A 157 5 5 HELIX 8 8 LYS A 160 SER A 162 5 3 HELIX 9 9 GLY A 163 GLY A 177 1 15 HELIX 10 10 SER A 178 SER A 181 5 4 HELIX 11 11 ASP A 188 ASP A 192 5 5 HELIX 12 12 ILE A 193 HIS A 203 1 11 HELIX 13 13 TYR A 223 ASN A 230 1 8 HELIX 14 14 LYS A 273 ASN A 276 5 4 HELIX 15 15 SER A 308 HIS A 321 1 14 HELIX 16 16 ARG A 322 THR A 334 1 13 HELIX 17 17 GLY A 337 GLN A 341 5 5 HELIX 18 18 LYS A 345 THR A 371 1 27 HELIX 19 19 SER A 392 VAL A 396 5 5 HELIX 20 20 THR A 398 LYS A 410 1 13 HELIX 21 21 SER A 421 GLY A 433 1 13 HELIX 22 22 SER A 445 GLN A 472 1 28
SHEET 1 A 9 THR A 139 TRP A 148 0 SHEET 2 A 9 ARG A 122 GLU A 133 -1 N VAL A 129 O LEU A 143 SHEET 3 A 9 LEU A 92 TYR A 103 -1 N ASP A 97 O SER A 128 SHEET 4 A 9 VAL A 183 CYS A 187 1 O ILE A 184 N ALA A 94 SHEET 5 A 9 ARG A 206 ARG A 210 1 O VAL A 208 N ALA A 185 SHEET 6 A 9 LYS A 297 THR A 302 -1 O LEU A 301 N VAL A 209 SHEET 7 A 9 ILE A 277 ILE A 287 -1 N ASN A 280 O THR A 302 SHEET 8 A 9 ARG A 259 LEU A 272 -1 N SER A 262 O ILE A 287 SHEET 9 A 9 GLY A 235 ILE A 241 -1 N ILE A 241 O ARG A 259 SHEET 1 B 2 LYS A 244 VAL A 247 0 SHEET 2 B 2 ARG A 253 ARG A 256 -1 O LYS A 254 N VAL A 246
LINK MN MN A 478 OD2 ASP A 97 1555 1555 2.18 LINK MN MN A 478 OE1 GLU A 326 1555 1555 2.45 LINK MN MN A 478 O HOH B 21 1555 1555 2.27 LINK MN MN A 478 O3' DG B 20 1555 1555 1.90 LINK MN MN A 478 OP1 DC C 1 1555 1555 2.07 LINK MN MN A 478 OE2 GLU A 326 1555 1555 2.08 LINK MN MN A 479 OD1 ASP A 97 1555 1555 2.11 LINK MN MN A 479 O HOH A 485 1555 1555 2.23 LINK MN MN A 479 O HOH A 486 1555 1555 2.21 LINK MN MN A 479 OP1 DC C 1 1555 1555 2.15 LINK MN MN A 479 OP2 DC C 1 1555 1555 2.38 LINK MN MN A 479 OD2 ASP A 188 1555 1555 2.15 LINK MG MG A 480 O HOH A 974 1555 1555 1.74 LINK MG MG A 480 OG SER A 181 1555 1555 2.56 LINK MG MG A 480 O SER A 178 1555 1555 2.54 LINK MG MG A 481 O HOH A 726 1555 1555 2.04 LINK MG MG A 481 OE1 GLU A 451 1555 1555 2.13 LINK MG MG A 481 O HOH A 730 1555 1555 2.09 LINK MG MG A 481 O HOH A 765 1555 1555 2.57 LINK MG MG A 481 O HOH A 794 1555 1555 2.23 LINK MG MG A 481 OE1 GLU A 454 1555 1555 2.26 LINK MG MG A 480 O SER A 178 1555 11655 2.58 LINK MG MG A 480 O HOH A 974 1555 11655 1.75 LINK MG MG A 480 OG SER A 181 1555 11655 2.60
SITE 1 AC1 5 ASP A 97 GLU A 326 DG B 20 HOH B 21 SITE 2 AC1 5 DC C 1 SITE 1 AC2 5 ASP A 97 ASP A 188 HOH A 485 HOH A 486 SITE 2 AC2 5 DC C 1 SITE 1 AC3 3 SER A 178 SER A 181 HOH A 974 SITE 1 AC4 6 GLU A 451 GLU A 454 HOH A 726 HOH A 730 SITE 2 AC4 6 HOH A 765 HOH A 794 SITE 1 AC5 4 ARG A 256 LEU A 296 DT C 2 DG C 3 SITE 1 AC6 6 SER A 42 THR A 334 GLY A 335 TRP A 450 SITE 2 AC6 6 HOH A 653 HOH A 802 SITE 1 AC7 6 GLU A 146 TRP A 148 GLU A 159 LYS A 164 SITE 2 AC7 6 ARG A 415 HOH A 577
CRYST1 112.700 112.700 235.900 90.00 90.00 120.00 P 65 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008873 0.005123 0.000000 0.00000
SCALE2 0.000000 0.010246 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004239 0.00000