10 20 30 40 50 60 70 80 1MR4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 18-SEP-02 1MR4
TITLE SOLUTION STRUCTURE OF NAD1 FROM NICOTIANA ALATA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTIANA ALATA PLANT DEFENSIN 1 (NAD1); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-47; COMPND 5 SYNONYM: FLOWER-SPECIFIC GAMMA-THIONIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 TISSUE: FLOWER BUDS
KEYWDS CYSTEINE-STABILIZED ALPHA-BETA MOTIF, PLANT DEFENSIN FOLD, KEYWDS 2 PLANT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.T.LAY,H.J.SCHIRRA,M.J.SCANLON,M.A.ANDERSON,D.J.CRAIK
REVDAT 2 24-FEB-09 1MR4 1 VERSN REVDAT 1 18-SEP-03 1MR4 0
JRNL AUTH F.T.LAY,H.J.SCHIRRA,M.J.SCANLON,M.A.ANDERSON, JRNL AUTH 2 D.J.CRAIK JRNL TITL THE THREE-DIMENSIONAL SOLUTION STRUCTURE OF NAD1, JRNL TITL 2 A NEW FLORAL DEFENSIN FROM NICOTIANA ALATA AND ITS JRNL TITL 3 APPLICATION TO A HOMOLOGY MODEL OF THE CROP JRNL TITL 4 DEFENSE PROTEIN ALFAFP JRNL REF J.MOL.BIOL. V. 325 175 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12473460 JRNL DOI 10.1016/S0022-2836(02)01103-8
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MR4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017125.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 303; 310 REMARK 210 PH : 4; 4; 4 REMARK 210 IONIC STRENGTH : 1MM; 1MM; 1MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM NAD1, 90%H2O, 10%D2O; 1MM REMARK 210 NAD1, 99.9%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : ARX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, XEASY, CNS 1.0, REMARK 210 ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 TORSION ANGLE DYNAMICS AND REMARK 210 SUBSEQUENT REFINEMENT IN CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 48.70 -88.35 REMARK 500 1 PHE A 29 -144.80 -138.91 REMARK 500 1 THR A 30 -48.57 -161.46 REMARK 500 1 LYS A 36 47.22 -76.46 REMARK 500 1 ILE A 37 -44.16 -135.28 REMARK 500 1 LEU A 38 -125.83 -135.09 REMARK 500 1 ARG A 39 52.21 -150.99 REMARK 500 2 PRO A 11 51.81 -63.40 REMARK 500 2 GLU A 27 -114.51 -80.57 REMARK 500 2 LYS A 28 46.47 -143.30 REMARK 500 2 PHE A 29 -141.55 -118.50 REMARK 500 2 THR A 30 -45.75 -159.05 REMARK 500 2 LYS A 36 33.07 -84.08 REMARK 500 2 ILE A 37 -46.13 -149.34 REMARK 500 2 PRO A 46 64.61 -69.47 REMARK 500 3 GLU A 2 61.47 68.49 REMARK 500 3 GLU A 27 -134.59 -84.73 REMARK 500 3 LYS A 36 33.03 -81.46 REMARK 500 3 ILE A 37 -42.21 -158.95 REMARK 500 3 PRO A 46 138.74 -38.82 REMARK 500 4 GLU A 2 35.52 158.71 REMARK 500 4 GLU A 27 -153.29 -85.92 REMARK 500 4 LYS A 28 55.96 -103.71 REMARK 500 4 PHE A 29 -128.54 -129.04 REMARK 500 4 THR A 30 -33.38 -178.26 REMARK 500 4 LYS A 36 47.65 -77.22 REMARK 500 4 ILE A 37 -40.69 -133.95 REMARK 500 4 LEU A 38 -123.63 -135.96 REMARK 500 4 ARG A 39 48.96 -151.21 REMARK 500 5 ASN A 8 46.22 -91.28 REMARK 500 5 THR A 9 -34.67 -154.71 REMARK 500 5 PHE A 29 -136.30 -128.33 REMARK 500 5 THR A 30 -42.06 -169.53 REMARK 500 5 HIS A 33 160.68 179.44 REMARK 500 5 LYS A 36 44.66 -83.92 REMARK 500 5 ILE A 37 -46.05 -146.71 REMARK 500 5 PRO A 46 65.63 -69.63 REMARK 500 6 GLU A 27 -125.85 -89.51 REMARK 500 6 PHE A 29 -146.04 -122.48 REMARK 500 6 THR A 30 -44.33 -152.65 REMARK 500 6 LYS A 36 31.01 -85.92 REMARK 500 6 ILE A 37 -50.90 -142.96 REMARK 500 7 SER A 7 95.59 -69.76 REMARK 500 7 ILE A 15 -44.62 -138.11 REMARK 500 7 GLU A 27 -152.85 -85.27 REMARK 500 7 PHE A 29 -143.32 -88.51 REMARK 500 7 THR A 30 -33.31 -170.88 REMARK 500 7 ILE A 37 -49.43 -145.75 REMARK 500 7 PRO A 46 68.66 -69.87 REMARK 500 8 ILE A 15 -47.15 -138.16 REMARK 500 8 PHE A 29 -136.16 -122.04 REMARK 500 8 THR A 30 -35.53 -164.95 REMARK 500 8 LYS A 36 34.52 -85.54 REMARK 500 8 ILE A 37 -48.66 -146.59 REMARK 500 9 GLU A 2 34.32 172.65 REMARK 500 9 GLU A 27 -138.71 -85.63 REMARK 500 9 LYS A 28 62.60 -117.30 REMARK 500 9 PHE A 29 -128.09 -134.16 REMARK 500 9 THR A 30 -31.88 -178.13 REMARK 500 9 LYS A 36 38.02 -91.57 REMARK 500 9 ILE A 37 -45.67 -142.64 REMARK 500 9 CYS A 41 95.43 -67.59 REMARK 500 10 PRO A 11 52.40 -66.69 REMARK 500 10 GLU A 27 -135.68 -80.46 REMARK 500 10 PHE A 29 -133.78 -137.50 REMARK 500 10 THR A 30 -38.96 -165.70 REMARK 500 10 LYS A 36 21.29 -79.20 REMARK 500 10 ILE A 37 -46.93 -153.32 REMARK 500 11 PRO A 11 50.09 -68.55 REMARK 500 11 GLU A 27 -145.78 -86.33 REMARK 500 11 LYS A 28 61.38 -106.83 REMARK 500 11 PHE A 29 -135.28 -130.76 REMARK 500 11 THR A 30 -31.36 -168.53 REMARK 500 11 LYS A 36 4.89 -69.13 REMARK 500 11 LEU A 38 -118.52 -146.77 REMARK 500 11 ARG A 39 45.86 -150.90 REMARK 500 12 SER A 7 132.26 -35.52 REMARK 500 12 GLU A 27 -143.69 -77.78 REMARK 500 12 PHE A 29 -139.76 -119.28 REMARK 500 12 THR A 30 -32.72 -163.67 REMARK 500 12 ILE A 37 -47.05 -146.79 REMARK 500 13 GLU A 27 -83.40 -74.94 REMARK 500 13 LYS A 28 40.75 178.63 REMARK 500 13 HIS A 33 149.44 -176.36 REMARK 500 13 ILE A 37 -47.88 -138.07 REMARK 500 13 LEU A 38 -141.51 -104.24 REMARK 500 13 ARG A 39 53.65 -151.97 REMARK 500 14 GLU A 2 54.69 70.56 REMARK 500 14 PRO A 11 49.53 -69.26 REMARK 500 14 PHE A 29 -143.37 -134.50 REMARK 500 14 THR A 30 -41.74 -166.03 REMARK 500 14 LYS A 36 35.99 -82.77 REMARK 500 14 ILE A 37 -47.57 -148.87 REMARK 500 15 PRO A 11 55.24 -92.70 REMARK 500 15 ILE A 15 -40.57 -131.05 REMARK 500 15 GLU A 27 -77.48 -67.29 REMARK 500 15 LYS A 28 34.69 179.10 REMARK 500 15 PHE A 29 -139.27 -105.93 REMARK 500 15 THR A 30 -38.68 -166.87 REMARK 500 15 LYS A 36 40.30 -79.60 REMARK 500 15 ILE A 37 -42.96 -146.39 REMARK 500 16 GLU A 2 49.79 72.09 REMARK 500 16 GLU A 27 -149.68 -79.65 REMARK 500 16 LYS A 28 55.46 -108.13 REMARK 500 16 PHE A 29 -144.80 -115.76 REMARK 500 16 THR A 30 -34.40 -162.01 REMARK 500 16 LYS A 36 46.88 -74.29 REMARK 500 16 ILE A 37 11.02 -152.64 REMARK 500 16 LEU A 38 -137.53 -174.96 REMARK 500 16 ARG A 39 56.45 -151.50 REMARK 500 17 GLU A 27 -132.70 -82.37 REMARK 500 17 PHE A 29 -140.74 -141.25 REMARK 500 17 THR A 30 -37.75 -164.03 REMARK 500 17 LYS A 36 46.76 -78.05 REMARK 500 17 ILE A 37 -44.25 -144.37 REMARK 500 17 LEU A 38 -133.84 -124.38 REMARK 500 17 ARG A 39 65.68 -150.82 REMARK 500 18 SER A 7 127.87 -35.96 REMARK 500 18 PHE A 10 113.01 -35.10 REMARK 500 18 GLU A 27 -90.62 -67.24 REMARK 500 18 LYS A 28 43.48 -169.65 REMARK 500 18 PHE A 29 -139.10 -114.66 REMARK 500 18 THR A 30 -31.13 -160.98 REMARK 500 18 LYS A 36 30.38 -86.71 REMARK 500 18 ILE A 37 -54.22 -140.68 REMARK 500 18 LEU A 38 -148.44 -95.71 REMARK 500 18 ARG A 39 55.83 -151.49 REMARK 500 19 PRO A 11 56.97 -62.22 REMARK 500 19 GLU A 27 -149.52 -83.91 REMARK 500 19 PHE A 29 -139.95 -95.27 REMARK 500 19 THR A 30 -41.39 -179.84 REMARK 500 19 HIS A 33 149.83 -171.43 REMARK 500 19 LYS A 36 30.49 -90.14 REMARK 500 19 ILE A 37 -51.15 -149.16 REMARK 500 20 ASN A 8 41.41 -90.05 REMARK 500 20 THR A 9 -41.40 -155.47 REMARK 500 20 GLU A 27 -158.82 -86.32 REMARK 500 20 PHE A 29 -139.08 -138.49 REMARK 500 20 THR A 30 -32.88 -169.62 REMARK 500 20 SER A 35 137.39 54.46 REMARK 500 20 LYS A 36 41.64 -92.05 REMARK 500 20 ILE A 37 -48.78 -158.00 REMARK 500 20 LEU A 38 -119.95 -122.77 REMARK 500 20 ARG A 39 56.20 -150.86 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1MR4 A 1 47 UNP P32026 THGF_TOBAC 26 72
SEQADV 1MR4 ILE A 37 UNP P32026 LEU 62 CONFLICT
SEQRES 1 A 47 ARG GLU CYS LYS THR GLU SER ASN THR PHE PRO GLY ILE SEQRES 2 A 47 CYS ILE THR LYS PRO PRO CYS ARG LYS ALA CYS ILE SER SEQRES 3 A 47 GLU LYS PHE THR ASP GLY HIS CYS SER LYS ILE LEU ARG SEQRES 4 A 47 ARG CYS LEU CYS THR LYS PRO CYS
HELIX 1 1 THR A 16 GLU A 27 1 12
SHEET 1 A 3 CYS A 3 GLU A 6 0 SHEET 2 A 3 CYS A 41 LYS A 45 -1 O CYS A 43 N THR A 5 SHEET 3 A 3 ASP A 31 CYS A 34 -1 N HIS A 33 O LEU A 42
SSBOND 1 CYS A 3 CYS A 47 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 34 1555 1555 2.03 SSBOND 3 CYS A 20 CYS A 41 1555 1555 2.03 SSBOND 4 CYS A 24 CYS A 43 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000