10 20 30 40 50 60 70 80 1MPV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 12-SEP-02 1MPV
TITLE STRUCTURE OF BHPBR3, THE BAFF-BINDING LOOP OF BR3 EMBEDDED TITLE 2 IN A BETA-HAIRPIN PEPTIDE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLYS RECEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BR3 LOOP (RESIDUES 26-31); COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER COMPND 6 13C, B CELL-ACTIVATING FACTOR RECEPTOR, BAFF RECEPTOR, COMPND 7 BAFF-R, BLYS RECEPTOR 3; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE RECEPTOR LOOP IS EMBEDDED WITHIN A BETA- COMPND 10 HAIRPIN (BHP) SCAFFOLD
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS SYNTHESIZED CHEMICALLY WITH SOURCE 4 ACETYLATED N-TERMINUS AND AMIDATED C-TERMINUS
KEYWDS BETA-HAIRPIN, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.KAYAGAKI,M.YAN,D.SESHASAYEE,H.WANG,W.LEE,D.M.FRENCH, AUTHOR 2 I.S.GREWAL,A.G.COCHRAN,N.C.GORDON,J.YIN,M.A.STAROVASNIK, AUTHOR 3 V.M.DIXIT
REVDAT 3 24-FEB-09 1MPV 1 VERSN REVDAT 2 01-APR-03 1MPV 1 JRNL REVDAT 1 30-OCT-02 1MPV 0
JRNL AUTH N.KAYAGAKI,M.YAN,D.SESHASAYEE,H.WANG,W.LEE, JRNL AUTH 2 D.M.FRENCH,I.S.GREWAL,A.G.COCHRAN,N.C.GORDON,J.YIN, JRNL AUTH 3 M.A.STAROVASNIK,V.M.DIXIT JRNL TITL BAFF/BLYS RECEPTOR 3 BINDS THE B CELL SURVIVAL JRNL TITL 2 FACTOR BAFF LIGAND THROUGH A DISCRETE SURFACE LOOP JRNL TITL 3 AND PROMOTES PROCESSING OF NF-KAPPAB2. JRNL REF IMMUNITY V. 17 515 2002 JRNL REFN ISSN 1074-7613 JRNL PMID 12387744 JRNL DOI 10.1016/S1074-7613(02)00425-9
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 98.0 REMARK 3 AUTHORS : ACCELRYS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COMPLETE 1H RESONANCE ASSIGNMENTS REMARK 3 WERE OBTAINED USING STANDARD 2D HOMONUCLEAR NMR METHODS. REMARK 3 DISTANCE RESTRAINTS WERE DERIVED FROM ANALYSIS OF A 2D NOESY REMARK 3 SPECTRUM (250MS MIXING TIME); HN-HA COUPLING CONSTANTS WERE REMARK 3 OBTAINED FROM ANALYSIS OF A DQF-COSY SPECTRUM ACQUIRED IN REMARK 3 WATER; AND HAHB VALUES WERE OBTAINED FROM ANALYSIS OF A COSY- REMARK 3 35 SPECTRUM ACQUIRED IN D2O. STRUCTURES WERE CALCULATED FROM A REMARK 3 TOTAL OF 119 NOE-DERIVED (INCLUDING 46 LONG-RANGE) DISTANCE REMARK 3 RESTRAINTS AND 16 DIHEDRAL ANGLE RESTRAINTS. STRUCTURES REMARK 3 SATISFY THE EXPERIMENTAL DATA VERY WELL WITH NO DISTANCE OR REMARK 3 DIHEDRAL ANGLE VIOLATIONS GREATER THAN 0.1 ANGSTROM OR 1 REMARK 3 DEGREE, RESPECTIVELY.
REMARK 4 REMARK 4 1MPV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-02. REMARK 100 THE RCSB ID CODE IS RCSB017081.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NO ADDED SALT REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.9 MM BHPBR3 PEPTIDE; 2.9 MM REMARK 210 BHPBR3 PEPTIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 COSY-35 REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.37.4.2, FELIX 98.0, REMARK 210 DGII 98.0 REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/ REMARK 210 SIMULATED ANNEALING FOLLOWED REMARK 210 BY RESTRAINED MOLECULAR REMARK 210 DYNAMICS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 30 58.17 85.86 REMARK 500 2 ARG A 30 60.69 74.13 REMARK 500 3 ARG A 30 58.92 75.75 REMARK 500 4 ARG A 30 56.28 87.63 REMARK 500 5 ARG A 30 59.91 70.80 REMARK 500 6 ARG A 30 59.43 71.05 REMARK 500 7 ARG A 30 60.23 73.48 REMARK 500 8 ARG A 30 51.71 90.63 REMARK 500 9 ARG A 30 62.74 68.58 REMARK 500 10 ARG A 30 60.57 74.03 REMARK 500 11 ARG A 30 58.08 73.92 REMARK 500 12 ARG A 30 60.15 74.03 REMARK 500 13 ARG A 30 59.79 75.10 REMARK 500 14 ARG A 30 52.46 83.37 REMARK 500 15 ARG A 30 52.40 103.41 REMARK 500 16 ARG A 30 55.93 84.88 REMARK 500 17 ARG A 30 60.16 73.51 REMARK 500 18 ARG A 30 60.80 65.95 REMARK 500 19 ARG A 30 52.08 106.57 REMARK 500 20 ARG A 30 60.45 74.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE A 22 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 35
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS PART OF AN OPTIMIZED BETA-HAIRPIN REMARK 999 SCAFFOLD, (SEE RUSSELL, BLANDL, SKELTON, & REMARK 999 COCHRAN, "STABILITY OF CYCLIC BETA-HAIRPINS: REMARK 999 ASYMMETRIC CONTRIBUTIONS FROM SIDE CHAINS OF REMARK 999 A HYDROGEN-BONDED CROSS-STRAND RESIDUE PAIR", REMARK 999 J. AMER. CHEM. SOC., IN PRESS.)
DBREF 1MPV A 26 31 UNP Q96RJ3 TR13C_HUMAN 26 31
SEQADV 1MPV CYS A 23 UNP Q96RJ3 SEE REMARK 999 SEQADV 1MPV HIS A 24 UNP Q96RJ3 SEE REMARK 999 SEQADV 1MPV TRP A 25 UNP Q96RJ3 SEE REMARK 999 SEQADV 1MPV TRP A 32 UNP Q96RJ3 SEE REMARK 999 SEQADV 1MPV VAL A 33 UNP Q96RJ3 SEE REMARK 999 SEQADV 1MPV CYS A 34 UNP Q96RJ3 SEE REMARK 999
SEQRES 1 A 14 ACE CYS HIS TRP ASP LEU LEU VAL ARG HIS TRP VAL CYS SEQRES 2 A 14 NH2
HET ACE A 22 6 HET NH2 A 35 3
HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP
FORMUL 1 ACE C2 H4 O FORMUL 1 NH2 H2 N
SHEET 1 A 2 HIS A 24 ASP A 26 0 SHEET 2 A 2 HIS A 31 VAL A 33 -1 O VAL A 33 N HIS A 24
SSBOND 1 CYS A 23 CYS A 34 1555 1555 2.06
LINK C ACE A 22 N CYS A 23 1555 1555 1.34 LINK N NH2 A 35 C CYS A 34 1555 1555 1.34
SITE 1 AC1 2 HIS A 24 VAL A 33 SITE 1 AC2 1 CYS A 34
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000