1MP1 - Header Asymmetric Unit

HEADER RNA BINDING PROTEIN 11-SEP-02 1MP1

TITLE SOLUTION STRUCTURE OF THE PWI MOTIF FROM SRM160

COMPND MOL_ID: 1; COMPND 2 MOLECULE: SER/ARG-RELATED NUCLEAR MATRIX PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PWI MOTIF (RESIDUES 27-134); COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRM160; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B

KEYWDS FOUR HELIX BUNDLE, RNA BINDING PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR B.R.SZYMCZYNA,J.BOWMAN,S.MCCRACKEN,A.PINEDA-LUCENA,Y.LU, AUTHOR 2 B.COX,M.LAMBERMON,B.R.GRAVELEY,C.H.ARROWSMITH,B.J.BLENCOWE

REVDAT 2 24-FEB-09 1MP1 1 VERSN REVDAT 1 16-SEP-03 1MP1 0

JRNL AUTH B.R.SZYMCZYNA,J.BOWMAN,S.MCCRACKEN,A.PINEDA-LUCENA, JRNL AUTH 2 Y.LU,B.COX,M.LAMBERMON,B.R.GRAVELEY,C.H.ARROWSMITH, JRNL AUTH 3 B.J.BLENCOWE JRNL TITL STRUCTURE AND FUNCTION OF THE PWI MOTIF: A NOVEL JRNL TITL 2 NUCLEIC ACID-BINDING DOMAIN THAT FACILITATES JRNL TITL 3 PRE-MRNA PROCESSING. JRNL REF GENES DEV. V. 17 461 2003 JRNL REFN ISSN 0890-9369 JRNL PMID 12600940 JRNL DOI 10.1101/GAD.1060403

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 3085 NOE REMARK 3 -DERIVED DISTANCE CONSTRAINTS, 106 DIHEDRAL ANGLE RESTRAINTS, REMARK 3 AND 44 DISTANCE RESTRAINTS FROM HYDROGEN BONDS.

REMARK 4 REMARK 4 1MP1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017069.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300MM NACL, 25MM PHOSPHATE REMARK 210 BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM PWI_MOTIF U-15N,13C, REMARK 210 300MM NACL, 25 MM PHOSPHATE REMARK 210 BUFFER, 1MM DTT, 1MM INHIBITOR REMARK 210 COCKTAIL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 30 -167.02 -119.89 REMARK 500 1 LYS A 37 175.15 55.18 REMARK 500 1 ASP A 39 93.65 -167.48 REMARK 500 1 ASP A 64 -151.48 -75.46 REMARK 500 1 ASP A 65 -48.47 -168.90 REMARK 500 1 LEU A 93 -166.84 -64.32 REMARK 500 1 GLU A 125 -77.92 -59.45 REMARK 500 1 LEU A 126 -174.15 -57.37 REMARK 500 1 LYS A 127 146.50 -172.86 REMARK 500 1 GLU A 129 -177.86 -66.11 REMARK 500 2 HIS A 25 -67.23 67.46 REMARK 500 2 GLN A 27 124.16 -179.37 REMARK 500 2 ALA A 31 -169.50 -75.67 REMARK 500 2 LYS A 37 174.31 54.86 REMARK 500 2 VAL A 38 -159.39 -154.28 REMARK 500 2 ASP A 39 97.11 -177.40 REMARK 500 2 ASP A 64 -153.77 -71.76 REMARK 500 2 ASP A 65 -49.05 -171.54 REMARK 500 2 LEU A 93 -167.98 -65.06 REMARK 500 2 GLU A 125 -72.12 -61.20 REMARK 500 2 LYS A 127 143.00 64.74 REMARK 500 2 GLU A 130 104.30 -170.72 REMARK 500 2 GLN A 133 140.94 -178.12 REMARK 500 3 HIS A 25 -58.73 68.91 REMARK 500 3 ALA A 31 -168.22 -67.51 REMARK 500 3 LYS A 37 175.95 53.21 REMARK 500 3 ASP A 39 93.90 -171.25 REMARK 500 3 ASP A 64 -154.52 -71.69 REMARK 500 3 ASP A 65 -49.65 -170.78 REMARK 500 3 LEU A 93 -167.41 -66.39 REMARK 500 3 LEU A 126 -179.60 -51.00 REMARK 500 3 LYS A 128 84.05 41.95 REMARK 500 3 GLU A 130 166.24 -46.19 REMARK 500 4 HIS A 25 -97.15 52.88 REMARK 500 4 GLN A 27 117.08 -176.92 REMARK 500 4 ALA A 31 -169.63 -79.85 REMARK 500 4 LYS A 37 173.54 53.37 REMARK 500 4 VAL A 38 -159.43 -153.47 REMARK 500 4 ASP A 39 97.96 -175.90 REMARK 500 4 ASP A 64 -150.20 -68.74 REMARK 500 4 ASP A 65 -56.53 -171.39 REMARK 500 4 LEU A 93 -166.66 -66.23 REMARK 500 4 LEU A 126 -173.39 -62.39 REMARK 500 4 GLU A 130 149.03 61.63 REMARK 500 5 HIS A 25 -172.83 49.07 REMARK 500 5 MET A 26 159.94 -39.37 REMARK 500 5 ALA A 31 -166.91 -78.12 REMARK 500 5 LYS A 37 174.95 53.82 REMARK 500 5 ASP A 39 93.35 -169.31 REMARK 500 5 ASP A 64 -169.62 -78.22 REMARK 500 5 ASP A 65 -53.44 -154.94 REMARK 500 5 LEU A 93 -168.56 -73.93 REMARK 500 5 LYS A 127 -70.05 -50.47 REMARK 500 5 LYS A 128 98.67 -40.34 REMARK 500 5 GLU A 130 58.24 -110.19 REMARK 500 6 HIS A 25 -61.52 72.27 REMARK 500 6 LYS A 37 171.88 54.13 REMARK 500 6 ASP A 39 94.74 -167.24 REMARK 500 6 ASP A 64 -155.31 -76.77 REMARK 500 6 ASP A 65 -49.10 -166.45 REMARK 500 6 LEU A 93 -164.96 -64.95 REMARK 500 6 LYS A 127 -68.86 70.80 REMARK 500 7 LEU A 28 -168.39 -166.87 REMARK 500 7 LYS A 37 172.28 54.02 REMARK 500 7 VAL A 38 -157.47 -151.80 REMARK 500 7 ASP A 39 93.98 -175.81 REMARK 500 7 ASP A 64 -152.94 -72.57 REMARK 500 7 ASP A 65 -44.53 -169.79 REMARK 500 7 LEU A 93 -167.93 -64.06 REMARK 500 7 LEU A 126 -79.30 -52.62 REMARK 500 7 GLU A 130 129.62 62.66 REMARK 500 7 LYS A 132 44.70 174.61 REMARK 500 8 MET A 26 108.14 -169.29 REMARK 500 8 LYS A 37 174.65 54.15 REMARK 500 8 VAL A 38 -157.50 -153.17 REMARK 500 8 ASP A 39 92.93 -176.82 REMARK 500 8 ASP A 64 -151.24 -74.41 REMARK 500 8 ASP A 65 -52.59 -169.05 REMARK 500 8 LEU A 93 -165.84 -62.34 REMARK 500 8 GLU A 125 -71.60 -65.41 REMARK 500 8 ILE A 131 164.22 55.86 REMARK 500 8 LYS A 132 150.93 60.48 REMARK 500 9 HIS A 25 -42.88 -135.16 REMARK 500 9 GLN A 27 134.60 67.79 REMARK 500 9 LEU A 28 -170.30 -172.08 REMARK 500 9 PHE A 30 -167.84 -123.46 REMARK 500 9 LYS A 37 173.12 53.56 REMARK 500 9 VAL A 38 -153.92 -152.46 REMARK 500 9 ASP A 39 94.03 -179.69 REMARK 500 9 ASP A 64 -151.15 -76.27 REMARK 500 9 ASP A 65 -46.96 -169.09 REMARK 500 9 LEU A 93 -165.03 -68.91 REMARK 500 9 LEU A 126 176.00 -49.00 REMARK 500 9 LYS A 127 98.90 -172.09 REMARK 500 9 LYS A 128 76.14 48.77 REMARK 500 9 GLU A 130 80.28 -171.03 REMARK 500 10 HIS A 25 -51.18 80.77 REMARK 500 10 ALA A 31 -165.51 -79.37 REMARK 500 10 LYS A 37 173.68 55.38 REMARK 500 10 VAL A 38 -158.51 -152.45 REMARK 500 10 ASP A 39 97.01 -177.11 REMARK 500 10 ASP A 64 -150.62 -73.97 REMARK 500 10 ASP A 65 -51.32 -170.35 REMARK 500 10 PHE A 92 -53.68 -125.30 REMARK 500 10 LEU A 93 -167.06 -55.77 REMARK 500 10 GLU A 125 -76.60 -60.64 REMARK 500 10 GLU A 129 90.04 33.00 REMARK 500 10 LYS A 132 -85.01 -67.54 REMARK 500 10 GLN A 133 130.10 -39.42 REMARK 500 11 HIS A 25 -50.05 81.37 REMARK 500 11 MET A 26 109.95 -166.99 REMARK 500 11 PHE A 30 -155.06 -106.41 REMARK 500 11 ALA A 31 -166.72 -108.19 REMARK 500 11 LYS A 37 170.83 -44.89 REMARK 500 11 VAL A 38 -158.63 -134.94 REMARK 500 11 ASP A 39 95.63 -178.17 REMARK 500 11 ASP A 64 -153.00 -68.21 REMARK 500 11 ASP A 65 -50.75 -172.86 REMARK 500 11 LEU A 93 -168.81 -64.73 REMARK 500 11 GLU A 125 -79.25 -55.40 REMARK 500 11 LEU A 126 -173.86 -59.81 REMARK 500 11 GLU A 130 79.35 -105.07 REMARK 500 12 HIS A 25 -42.41 172.26 REMARK 500 12 MET A 26 -63.53 -124.52 REMARK 500 12 GLN A 27 118.42 74.78 REMARK 500 12 ALA A 31 -159.58 -106.18 REMARK 500 12 LYS A 37 174.42 -47.00 REMARK 500 12 VAL A 38 -158.73 -142.07 REMARK 500 12 ASP A 39 96.35 -175.59 REMARK 500 12 ASP A 64 -150.65 -73.48 REMARK 500 12 ASP A 65 -53.99 -167.62 REMARK 500 12 SER A 82 -32.82 -39.74 REMARK 500 12 LEU A 93 -162.85 -63.80 REMARK 500 12 LEU A 126 -172.46 -62.09 REMARK 500 13 MET A 26 155.81 176.37 REMARK 500 13 LEU A 28 -171.88 -171.07 REMARK 500 13 LYS A 37 171.89 54.71 REMARK 500 13 VAL A 38 -158.44 -152.45 REMARK 500 13 ASP A 39 96.32 -176.42 REMARK 500 13 ASP A 65 -52.85 -151.81 REMARK 500 13 LEU A 93 -167.40 -69.44 REMARK 500 13 GLU A 129 -73.36 -74.29 REMARK 500 13 GLU A 130 77.18 52.52 REMARK 500 13 LYS A 132 -72.22 -40.77 REMARK 500 13 GLN A 133 129.77 76.14 REMARK 500 14 HIS A 25 -34.17 175.42 REMARK 500 14 MET A 26 -90.20 -169.38 REMARK 500 14 GLN A 27 127.53 86.15 REMARK 500 14 LYS A 37 173.80 53.02 REMARK 500 14 ASP A 39 94.20 -173.84 REMARK 500 14 ASP A 64 -151.59 -71.31 REMARK 500 14 ASP A 65 -51.67 -167.76 REMARK 500 14 PHE A 92 -51.15 -124.81 REMARK 500 14 LEU A 93 -164.24 -60.78 REMARK 500 14 LEU A 126 150.94 -40.67 REMARK 500 14 GLU A 130 75.68 -166.63 REMARK 500 14 LYS A 132 93.80 63.01 REMARK 500 15 MET A 26 163.46 61.22 REMARK 500 15 GLN A 27 44.66 -173.53 REMARK 500 15 PHE A 30 -167.06 -117.19 REMARK 500 15 LYS A 37 176.01 55.09 REMARK 500 15 ASP A 39 95.75 -170.02 REMARK 500 15 ASP A 65 -52.94 -152.78 REMARK 500 15 LEU A 93 -167.15 -66.18 REMARK 500 15 GLU A 125 -72.88 -50.26 REMARK 500 15 LEU A 126 107.52 -59.27 REMARK 500 15 GLN A 133 149.02 -170.89 REMARK 500 16 HIS A 25 -57.26 71.53 REMARK 500 16 MET A 26 141.73 -172.22 REMARK 500 16 LEU A 28 -169.49 -168.10 REMARK 500 16 ALA A 31 -169.26 -78.61 REMARK 500 16 GLU A 35 34.87 -90.77 REMARK 500 16 LYS A 37 172.83 53.24 REMARK 500 16 ASP A 39 97.79 -177.49 REMARK 500 16 ASP A 65 -53.15 -152.56 REMARK 500 16 LEU A 93 -169.12 -65.78 REMARK 500 16 LEU A 126 -176.37 -56.01 REMARK 500 16 GLU A 129 143.93 -38.98 REMARK 500 16 ILE A 131 75.03 -107.96 REMARK 500 16 LYS A 132 91.38 66.44 REMARK 500 16 GLN A 133 129.74 -38.96 REMARK 500 17 MET A 26 -69.25 -135.62 REMARK 500 17 GLN A 27 125.60 87.80 REMARK 500 17 PHE A 30 -169.63 -123.31 REMARK 500 17 LYS A 37 169.05 57.17 REMARK 500 17 ASP A 65 -49.38 -156.09 REMARK 500 17 LEU A 93 -167.32 -67.82 REMARK 500 17 LEU A 126 171.45 -48.30 REMARK 500 17 LYS A 128 83.98 44.22 REMARK 500 17 GLU A 130 81.86 -177.52 REMARK 500 17 GLN A 133 136.80 -177.16 REMARK 500 18 MET A 26 -108.50 -152.69 REMARK 500 18 GLN A 27 105.76 89.87 REMARK 500 18 PHE A 30 -168.38 -114.83 REMARK 500 18 LYS A 37 171.07 54.31 REMARK 500 18 VAL A 38 -159.57 -152.51 REMARK 500 18 ASP A 39 92.57 -171.84 REMARK 500 18 ASP A 64 -151.91 -73.99 REMARK 500 18 ASP A 65 -52.78 -168.45 REMARK 500 18 LEU A 93 -165.43 -64.19 REMARK 500 18 ASN A 115 -158.60 -85.46 REMARK 500 18 LEU A 126 -176.51 -57.64 REMARK 500 18 GLU A 129 94.67 -69.00 REMARK 500 19 HIS A 25 -123.74 49.18 REMARK 500 19 LYS A 37 173.68 53.53 REMARK 500 19 ASP A 39 95.85 -173.67 REMARK 500 19 ASP A 64 -150.40 -69.10 REMARK 500 19 ASP A 65 -45.08 -169.58 REMARK 500 19 VAL A 77 -167.84 -100.47 REMARK 500 19 LEU A 93 -164.90 -71.64 REMARK 500 19 LEU A 126 -172.39 -59.23 REMARK 500 19 LYS A 128 118.68 61.68 REMARK 500 19 GLU A 130 77.15 -111.44 REMARK 500 20 HIS A 25 41.39 -100.17 REMARK 500 20 MET A 26 -169.96 -126.67 REMARK 500 20 GLN A 27 110.99 83.87 REMARK 500 20 LEU A 28 -166.34 -176.55 REMARK 500 20 ALA A 31 -176.09 -66.19 REMARK 500 20 LYS A 37 173.99 54.56 REMARK 500 20 ASP A 39 93.35 -172.88 REMARK 500 20 ASP A 64 -153.41 -80.78 REMARK 500 20 ASP A 65 -43.95 -166.01 REMARK 500 20 LEU A 93 -166.50 -59.59 REMARK 500 20 GLU A 104 -33.27 -138.03 REMARK 500 20 LEU A 126 -86.71 -44.40 REMARK 500 20 LYS A 127 64.41 -153.09 REMARK 500 20 LYS A 128 60.90 -150.80 REMARK 500 20 GLU A 130 66.22 -179.67 REMARK 500 20 ILE A 131 78.57 36.40 REMARK 500 REMARK 500 REMARK: NULL

DBREF 1MP1 A 27 134 UNP Q8IYB3 SRRM1_HUMAN 27 134

SEQADV 1MP1 SER A 24 UNP Q8IYB3 CLONING ARTIFACT SEQADV 1MP1 HIS A 25 UNP Q8IYB3 CLONING ARTIFACT SEQADV 1MP1 MET A 26 UNP Q8IYB3 CLONING ARTIFACT

SEQRES 1 A 111 SER HIS MET GLN LEU LYS PHE ALA GLU CYS LEU GLU LYS SEQRES 2 A 111 LYS VAL ASP MET SER LYS VAL ASN LEU GLU VAL ILE LYS SEQRES 3 A 111 PRO TRP ILE THR LYS ARG VAL THR GLU ILE LEU GLY PHE SEQRES 4 A 111 GLU ASP ASP VAL VAL ILE GLU PHE ILE PHE ASN GLN LEU SEQRES 5 A 111 GLU VAL LYS ASN PRO ASP SER LYS MET MET GLN ILE ASN SEQRES 6 A 111 LEU THR GLY PHE LEU ASN GLY LYS ASN ALA ARG GLU PHE SEQRES 7 A 111 MET GLY GLU LEU TRP PRO LEU LEU LEU SER ALA GLN GLU SEQRES 8 A 111 ASN ILE ALA GLY ILE PRO SER ALA PHE LEU GLU LEU LYS SEQRES 9 A 111 LYS GLU GLU ILE LYS GLN ARG

HELIX 1 1 GLU A 32 LYS A 37 5 6 HELIX 2 2 LEU A 45 VAL A 47 5 3 HELIX 3 3 ILE A 48 GLY A 61 1 14 HELIX 4 4 ASP A 65 LEU A 75 1 11 HELIX 5 5 ASP A 81 THR A 90 1 10 HELIX 6 6 GLY A 95 GLN A 113 1 19 HELIX 7 7 PRO A 120 GLU A 125 1 6

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000