10 20 30 40 50 60 70 80 1MMX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 04-SEP-02 1MMX
TITLE CRYSTAL STRUCTURE OF GALACTOSE MUTAROTASE FROM LACTOCOCCUS TITLE 2 LACTIS COMPLEXED WITH D-FUCOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDOSE 1-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GALACTOSE MUTAROTASE; COMPND 5 EC: 5.1.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 GENE: GALM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28
KEYWDS EPIMERASE, SUGAR BINDING, GALACTOSEMIA, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.B.THODEN,J.KIM,F.M.RAUSHEL,H.M.HOLDEN
REVDAT 3 24-FEB-09 1MMX 1 VERSN REVDAT 2 29-MAR-05 1MMX 1 JRNL REMARK MASTER REVDAT 1 18-SEP-02 1MMX 0
JRNL AUTH J.B.THODEN,J.KIM,F.M.RAUSHEL,H.M.HOLDEN JRNL TITL STRUCTURAL AND KINETIC STUDIES OF SUGAR BINDING TO JRNL TITL 2 GALACTOSE MUTAROTASE FROM LACTOCOCCUS LACTIS. JRNL REF J.BIOL.CHEM. V. 277 45458 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12218067 JRNL DOI 10.1074/JBC.M208395200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT V. 5-F REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 66687 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6700 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1710 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 66687 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 506 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.260 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MMX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017024.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GOEBEL OPTICS REMARK 200 OPTICS : GOEBEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : FRAMBO REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66843 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 1L7J REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-5000-OME, MES, FUCOSE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 MET B 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 99 CD GLU A 99 OE2 0.072 REMARK 500 GLU A 100 CD GLU A 100 OE2 0.086 REMARK 500 GLU A 156 CD GLU A 156 OE2 0.067 REMARK 500 GLU A 292 CD GLU A 292 OE2 0.067 REMARK 500 GLU A 312 CD GLU A 312 OE2 0.068 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.070 REMARK 500 GLU B 99 CD GLU B 99 OE2 0.069 REMARK 500 GLU B 203 CD GLU B 203 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 7 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 7 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 33 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 36 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 113 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 146 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 146 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 147 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 148 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 160 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 160 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 178 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 243 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 249 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 249 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 272 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 272 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG B 6 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 49 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 49 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 83 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP B 113 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 146 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 147 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 147 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B 178 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 178 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 216 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 216 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 249 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP B 249 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP B 254 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 57 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 62.89 39.41 REMARK 500 ASP A 74 13.80 57.24 REMARK 500 SER A 101 -169.37 -78.43 REMARK 500 THR A 163 -157.28 -154.04 REMARK 500 ASN A 166 69.41 -168.60 REMARK 500 HIS A 170 42.91 -108.89 REMARK 500 ASN A 174 90.30 -161.25 REMARK 500 ASP A 200 -163.10 -167.91 REMARK 500 ASP A 243 69.42 -162.20 REMARK 500 ASP A 263 -120.24 56.71 REMARK 500 THR A 280 43.42 -97.13 REMARK 500 GLU A 292 -3.07 72.63 REMARK 500 GLN A 306 -173.88 -178.04 REMARK 500 LEU B 10 14.42 54.43 REMARK 500 ALA B 32 59.36 40.00 REMARK 500 ASP B 74 16.12 57.46 REMARK 500 ASN B 131 16.03 59.85 REMARK 500 THR B 163 -159.76 -148.12 REMARK 500 ASN B 166 71.50 -165.97 REMARK 500 ASP B 200 -160.89 -167.85 REMARK 500 ASP B 243 60.81 -164.11 REMARK 500 ASP B 263 -123.68 58.87 REMARK 500 THR B 280 44.86 -101.77 REMARK 500 GLN B 306 -173.83 -172.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 349 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 13 OD1 REMARK 620 2 ASP A 13 OD1 157.3 REMARK 620 3 HOH B 355 O 98.4 82.5 REMARK 620 4 HOH B 361 O 80.1 94.2 167.5 REMARK 620 5 HIS B 346 NE2 99.3 100.5 116.6 75.9 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC A 348 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC B 348 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 349
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MMU RELATED DB: PDB REMARK 900 SAME PROTEIN CRYSTALLIZED WITH ALPHA-D-GLUCOSE REMARK 900 RELATED ID: 1MMY RELATED DB: PDB REMARK 900 SAME PROTEIN CRYSTALLIZED WITH 6-DEOXY-ALPHA-D-GLUCOSE REMARK 900 RELATED ID: 1MMZ RELATED DB: PDB REMARK 900 SAME PROTEIN CRYSTALLIZED WITH ALPHA-L-ARABINOSE REMARK 900 RELATED ID: 1MN0 RELATED DB: PDB REMARK 900 SAME PROTEIN CRYSTALLIZED WITH XYLOPYRANOSE
DBREF 1MMX A 1 339 UNP Q9ZB17 Q9ZB17_9LACT 1 339 DBREF 1MMX B 1 339 UNP Q9ZB17 Q9ZB17_9LACT 1 339
SEQADV 1MMX SER A 2 UNP Q9ZB17 GLU 2 ENGINEERED SEQADV 1MMX LEU A 340 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX GLU A 341 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS A 342 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS A 343 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS A 344 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS A 345 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS A 346 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS A 347 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX SER B 2 UNP Q9ZB17 GLU 2 ENGINEERED SEQADV 1MMX LEU B 340 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX GLU B 341 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS B 342 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS B 343 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS B 344 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS B 345 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS B 346 UNP Q9ZB17 EXPRESSION TAG SEQADV 1MMX HIS B 347 UNP Q9ZB17 EXPRESSION TAG
SEQRES 1 A 347 MET SER ILE LYS ILE ARG ASP PHE GLY LEU GLY SER ASP SEQRES 2 A 347 LEU ILE SER LEU THR ASN LYS ALA GLY VAL THR ILE SER SEQRES 3 A 347 PHE THR ASN LEU GLY ALA ARG ILE VAL ASP TRP GLN LYS SEQRES 4 A 347 ASP GLY LYS HIS LEU ILE LEU GLY PHE ASP SER ALA LYS SEQRES 5 A 347 GLU TYR LEU GLU LYS ASP ALA TYR PRO GLY ALA THR VAL SEQRES 6 A 347 GLY PRO THR ALA GLY ARG ILE LYS ASP GLY LEU VAL LYS SEQRES 7 A 347 ILE SER GLY LYS ASP TYR ILE LEU ASN GLN ASN GLU GLY SEQRES 8 A 347 PRO GLN THR LEU HIS GLY GLY GLU GLU SER ILE HIS THR SEQRES 9 A 347 LYS LEU TRP THR TYR GLU VAL THR ASP LEU GLY ALA GLU SEQRES 10 A 347 VAL GLN VAL LYS PHE SER LEU VAL SER ASN ASP GLY THR SEQRES 11 A 347 ASN GLY TYR PRO GLY LYS ILE GLU MET SER VAL THR HIS SEQRES 12 A 347 SER PHE ASP ASP ASP ASN LYS TRP LYS ILE HIS TYR GLU SEQRES 13 A 347 ALA ILE SER ASP LYS ASP THR VAL PHE ASN PRO THR GLY SEQRES 14 A 347 HIS VAL TYR PHE ASN LEU ASN GLY ASP ALA SER GLU SER SEQRES 15 A 347 VAL GLU ASN HIS GLY LEU ARG LEU ALA ALA SER ARG PHE SEQRES 16 A 347 VAL PRO LEU LYS ASP GLN THR GLU ILE VAL ARG GLY ASP SEQRES 17 A 347 ILE VAL ASP ILE LYS ASN THR ASP LEU ASP PHE ARG GLN SEQRES 18 A 347 GLU LYS GLN LEU SER ASN ALA PHE ASN SER ASN MET GLU SEQRES 19 A 347 GLN VAL GLN LEU VAL LYS GLY ILE ASP HIS PRO PHE LEU SEQRES 20 A 347 LEU ASP GLN LEU GLY LEU ASP LYS GLU GLN ALA ARG LEU SEQRES 21 A 347 THR LEU ASP ASP THR SER ILE SER VAL PHE THR ASP GLN SEQRES 22 A 347 PRO SER ILE VAL ILE PHE THR ALA ASN PHE GLY ASP LEU SEQRES 23 A 347 GLY THR LEU TYR HIS GLU LYS LYS GLN VAL HIS HIS GLY SEQRES 24 A 347 GLY ILE THR PHE GLU CYS GLN VAL SER PRO GLY SER GLU SEQRES 25 A 347 GLN ILE PRO GLU LEU GLY ASP ILE SER LEU LYS ALA GLY SEQRES 26 A 347 GLU LYS TYR GLN ALA THR THR ILE TYR SER LEU HIS THR SEQRES 27 A 347 LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 347 MET SER ILE LYS ILE ARG ASP PHE GLY LEU GLY SER ASP SEQRES 2 B 347 LEU ILE SER LEU THR ASN LYS ALA GLY VAL THR ILE SER SEQRES 3 B 347 PHE THR ASN LEU GLY ALA ARG ILE VAL ASP TRP GLN LYS SEQRES 4 B 347 ASP GLY LYS HIS LEU ILE LEU GLY PHE ASP SER ALA LYS SEQRES 5 B 347 GLU TYR LEU GLU LYS ASP ALA TYR PRO GLY ALA THR VAL SEQRES 6 B 347 GLY PRO THR ALA GLY ARG ILE LYS ASP GLY LEU VAL LYS SEQRES 7 B 347 ILE SER GLY LYS ASP TYR ILE LEU ASN GLN ASN GLU GLY SEQRES 8 B 347 PRO GLN THR LEU HIS GLY GLY GLU GLU SER ILE HIS THR SEQRES 9 B 347 LYS LEU TRP THR TYR GLU VAL THR ASP LEU GLY ALA GLU SEQRES 10 B 347 VAL GLN VAL LYS PHE SER LEU VAL SER ASN ASP GLY THR SEQRES 11 B 347 ASN GLY TYR PRO GLY LYS ILE GLU MET SER VAL THR HIS SEQRES 12 B 347 SER PHE ASP ASP ASP ASN LYS TRP LYS ILE HIS TYR GLU SEQRES 13 B 347 ALA ILE SER ASP LYS ASP THR VAL PHE ASN PRO THR GLY SEQRES 14 B 347 HIS VAL TYR PHE ASN LEU ASN GLY ASP ALA SER GLU SER SEQRES 15 B 347 VAL GLU ASN HIS GLY LEU ARG LEU ALA ALA SER ARG PHE SEQRES 16 B 347 VAL PRO LEU LYS ASP GLN THR GLU ILE VAL ARG GLY ASP SEQRES 17 B 347 ILE VAL ASP ILE LYS ASN THR ASP LEU ASP PHE ARG GLN SEQRES 18 B 347 GLU LYS GLN LEU SER ASN ALA PHE ASN SER ASN MET GLU SEQRES 19 B 347 GLN VAL GLN LEU VAL LYS GLY ILE ASP HIS PRO PHE LEU SEQRES 20 B 347 LEU ASP GLN LEU GLY LEU ASP LYS GLU GLN ALA ARG LEU SEQRES 21 B 347 THR LEU ASP ASP THR SER ILE SER VAL PHE THR ASP GLN SEQRES 22 B 347 PRO SER ILE VAL ILE PHE THR ALA ASN PHE GLY ASP LEU SEQRES 23 B 347 GLY THR LEU TYR HIS GLU LYS LYS GLN VAL HIS HIS GLY SEQRES 24 B 347 GLY ILE THR PHE GLU CYS GLN VAL SER PRO GLY SER GLU SEQRES 25 B 347 GLN ILE PRO GLU LEU GLY ASP ILE SER LEU LYS ALA GLY SEQRES 26 B 347 GLU LYS TYR GLN ALA THR THR ILE TYR SER LEU HIS THR SEQRES 27 B 347 LYS LEU GLU HIS HIS HIS HIS HIS HIS
HET FUC A 348 12 HET FUC B 348 12 HET NA A 349 1
HETNAM FUC ALPHA-L-FUCOSE HETNAM NA SODIUM ION
FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 NA NA 1+ FORMUL 6 HOH *506(H2 O)
HELIX 1 1 SER A 50 LYS A 57 1 8 HELIX 2 2 SER A 101 LYS A 105 5 5 HELIX 3 3 GLY A 129 TYR A 133 5 5 HELIX 4 4 SER A 182 ASN A 185 5 4 HELIX 5 5 LEU A 225 ASN A 230 1 6 HELIX 6 6 MET A 233 LYS A 240 1 8 HELIX 7 7 ILE A 314 GLY A 318 5 5 HELIX 8 8 SER B 50 LYS B 57 1 8 HELIX 9 9 SER B 101 LYS B 105 5 5 HELIX 10 10 GLY B 129 TYR B 133 5 5 HELIX 11 11 SER B 182 ASN B 185 5 4 HELIX 12 12 LEU B 225 ASN B 230 1 6 HELIX 13 13 MET B 233 LYS B 240 1 8 HELIX 14 14 ILE B 314 GLY B 318 5 5
SHEET 1 A 5 ILE A 3 GLY A 9 0 SHEET 2 A 5 SER A 12 THR A 18 -1 O LEU A 14 N ARG A 6 SHEET 3 A 5 THR A 24 THR A 28 -1 O PHE A 27 N ILE A 15 SHEET 4 A 5 ARG A 33 LYS A 39 -1 O VAL A 35 N SER A 26 SHEET 5 A 5 LYS A 42 HIS A 43 -1 O LYS A 42 N LYS A 39 SHEET 1 B 2 THR A 64 VAL A 65 0 SHEET 2 B 2 THR A 168 GLY A 169 -1 O THR A 168 N VAL A 65 SHEET 1 C 2 ARG A 71 ILE A 72 0 SHEET 2 C 2 THR A 94 LEU A 95 -1 O THR A 94 N ILE A 72 SHEET 1 D 2 LEU A 76 ILE A 79 0 SHEET 2 D 2 LYS A 82 ILE A 85 -1 O LYS A 82 N ILE A 79 SHEET 1 E 9 THR A 108 ASP A 113 0 SHEET 2 E 9 GLU A 117 SER A 126 -1 O GLN A 119 N THR A 112 SHEET 3 E 9 ILE A 137 ASP A 146 -1 O MET A 139 N LEU A 124 SHEET 4 E 9 LYS A 150 SER A 159 -1 O ILE A 158 N GLU A 138 SHEET 5 E 9 LYS A 327 THR A 338 -1 O TYR A 328 N ALA A 157 SHEET 6 E 9 THR A 265 THR A 271 -1 N PHE A 270 O ILE A 333 SHEET 7 E 9 ALA A 258 LEU A 262 -1 N LEU A 260 O ILE A 267 SHEET 8 E 9 GLY A 187 LEU A 190 -1 N GLY A 187 O THR A 261 SHEET 9 E 9 LYS A 223 GLN A 224 -1 O LYS A 223 N LEU A 188 SHEET 1 F 2 THR A 163 VAL A 164 0 SHEET 2 F 2 SER A 321 LEU A 322 -1 O LEU A 322 N THR A 163 SHEET 1 G 2 TYR A 172 PHE A 173 0 SHEET 2 G 2 ILE A 301 THR A 302 -1 O ILE A 301 N PHE A 173 SHEET 1 H 5 VAL A 210 ASP A 211 0 SHEET 2 H 5 ALA A 192 PHE A 195 -1 N PHE A 195 O VAL A 210 SHEET 3 H 5 ASP A 243 LEU A 248 -1 O LEU A 247 N ARG A 194 SHEET 4 H 5 SER A 275 PHE A 279 -1 O ILE A 278 N HIS A 244 SHEET 5 H 5 GLU A 304 GLN A 306 -1 O GLU A 304 N VAL A 277 SHEET 1 I 2 LEU A 289 TYR A 290 0 SHEET 2 I 2 LYS A 293 LYS A 294 -1 O LYS A 293 N TYR A 290 SHEET 1 J 5 ILE B 3 GLY B 9 0 SHEET 2 J 5 SER B 12 THR B 18 -1 O LEU B 14 N ARG B 6 SHEET 3 J 5 THR B 24 THR B 28 -1 O PHE B 27 N ILE B 15 SHEET 4 J 5 ARG B 33 LYS B 39 -1 O VAL B 35 N SER B 26 SHEET 5 J 5 LYS B 42 HIS B 43 -1 O LYS B 42 N LYS B 39 SHEET 1 K 2 THR B 64 VAL B 65 0 SHEET 2 K 2 THR B 168 GLY B 169 -1 O THR B 168 N VAL B 65 SHEET 1 L 2 ARG B 71 ILE B 72 0 SHEET 2 L 2 THR B 94 LEU B 95 -1 O THR B 94 N ILE B 72 SHEET 1 M 2 LEU B 76 ILE B 79 0 SHEET 2 M 2 LYS B 82 ILE B 85 -1 O LYS B 82 N ILE B 79 SHEET 1 N 9 THR B 108 ASP B 113 0 SHEET 2 N 9 GLU B 117 SER B 126 -1 O SER B 123 N THR B 108 SHEET 3 N 9 ILE B 137 ASP B 146 -1 O VAL B 141 N PHE B 122 SHEET 4 N 9 LYS B 150 SER B 159 -1 O ILE B 158 N GLU B 138 SHEET 5 N 9 TYR B 328 THR B 338 -1 O TYR B 328 N ALA B 157 SHEET 6 N 9 THR B 265 THR B 271 -1 N PHE B 270 O ILE B 333 SHEET 7 N 9 ALA B 258 LEU B 262 -1 N ALA B 258 O VAL B 269 SHEET 8 N 9 GLY B 187 LEU B 190 -1 N GLY B 187 O THR B 261 SHEET 9 N 9 LYS B 223 GLN B 224 -1 O LYS B 223 N LEU B 188 SHEET 1 O 2 THR B 163 VAL B 164 0 SHEET 2 O 2 SER B 321 LEU B 322 -1 O LEU B 322 N THR B 163 SHEET 1 P 2 TYR B 172 PHE B 173 0 SHEET 2 P 2 ILE B 301 THR B 302 -1 O ILE B 301 N PHE B 173 SHEET 1 Q 5 VAL B 210 ASP B 211 0 SHEET 2 Q 5 ALA B 192 PHE B 195 -1 N PHE B 195 O VAL B 210 SHEET 3 Q 5 ASP B 243 LEU B 248 -1 O LEU B 247 N ARG B 194 SHEET 4 Q 5 SER B 275 PHE B 279 -1 O ILE B 278 N HIS B 244 SHEET 5 Q 5 GLU B 304 GLN B 306 -1 O GLU B 304 N VAL B 277 SHEET 1 R 2 LEU B 289 TYR B 290 0 SHEET 2 R 2 LYS B 293 LYS B 294 -1 O LYS B 293 N TYR B 290
LINK NA NA A 349 OD1 ASP B 13 1555 1555 2.19 LINK NA NA A 349 OD1 ASP A 13 1555 1555 2.20 LINK NA NA A 349 O HOH B 355 1555 1555 2.27 LINK NA NA A 349 O HOH B 361 1555 3655 2.47 LINK NA NA A 349 NE2 HIS B 346 1555 3655 2.29
CISPEP 1 GLY A 66 PRO A 67 0 3.81 CISPEP 2 GLY A 135 LYS A 136 0 -0.85 CISPEP 3 GLY B 66 PRO B 67 0 2.89 CISPEP 4 GLY B 135 LYS B 136 0 1.57
SITE 1 AC1 11 ARG A 71 HIS A 96 HIS A 170 GLU A 203 SITE 2 AC1 11 ASP A 243 PHE A 279 GLU A 304 HOH A 380 SITE 3 AC1 11 HOH A 431 HOH A 468 HOH A 573 SITE 1 AC2 11 ARG B 71 HIS B 96 HIS B 170 GLU B 203 SITE 2 AC2 11 ASP B 243 PHE B 279 GLU B 304 HOH B 354 SITE 3 AC2 11 HOH B 378 HOH B 445 HOH B 472 SITE 1 AC3 5 ASP A 13 ASP B 13 HIS B 346 HOH B 355 SITE 2 AC3 5 HOH B 361
CRYST1 44.900 76.300 210.900 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022272 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013106 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004742 0.00000