10 20 30 40 50 60 70 80 1MKN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HEPARIN-BINDING GROWTH FACTOR 16-MAR-99 1MKN
TITLE N-TERMINAL HALF OF MIDKINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (MIDKINE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL HALF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE OF THIS PROTEIN IS NATURALLY FOUND IN HOMO SOURCE 5 SAPIENS (HUMAN).
KEYWDS HEPARIN-BINDING GROWTH FACTOR
EXPDTA SOLUTION NMR
AUTHOR W.IWASAKI,K.NAGATA,H.HATANAKA,K.OGURA,T.INUI,T.KIMURA, AUTHOR 2 T.MURAMATSU,K.YOSHIDA,M.TASUMI,F.INAGAKI
REVDAT 4 24-FEB-09 1MKN 1 VERSN REVDAT 3 01-APR-03 1MKN 1 JRNL REVDAT 2 21-APR-99 1MKN 1 REMARK REVDAT 1 23-MAR-99 1MKN 0
JRNL AUTH W.IWASAKI,K.NAGATA,H.HATANAKA,T.INUI,T.KIMURA, JRNL AUTH 2 T.MURAMATSU,K.YOSHIDA,M.TASUMI,F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF MIDKINE, A NEW JRNL TITL 2 HEPARIN-BINDING GROWTH FACTOR. JRNL REF EMBO J. V. 16 6936 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9384573 JRNL DOI 10.1093/EMBOJ/16.23.6936
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MKN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-99. REMARK 100 THE RCSB ID CODE IS RCSB000661.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MEAN STRUCTURE.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 46.41 -93.65 REMARK 500 LYS A 5 90.98 -47.35 REMARK 500 LYS A 8 151.86 57.03 REMARK 500 PRO A 11 -90.89 -78.25 REMARK 500 GLU A 14 145.66 -172.24 REMARK 500 CYS A 15 78.33 63.46 REMARK 500 GLU A 17 -88.85 -52.65 REMARK 500 TRP A 18 125.53 57.35 REMARK 500 ALA A 19 88.84 -57.20 REMARK 500 SER A 27 -97.41 -119.09 REMARK 500 LYS A 28 -132.72 -61.73 REMARK 500 CYS A 30 -104.72 178.41 REMARK 500 CYS A 39 -66.90 -120.96 REMARK 500 GLN A 42 -142.25 -114.99 REMARK 500 THR A 43 144.77 141.71 REMARK 500 GLN A 44 -167.12 165.24 REMARK 500 CYS A 48 132.77 -174.35 REMARK 500 PRO A 51 35.77 -79.17 REMARK 500 CYS A 52 60.49 39.19 REMARK 500 ASN A 53 33.71 -92.76 REMARK 500 GLU A 57 95.40 148.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 35 0.24 SIDE_CHAIN REMARK 500 ARG A 45 0.25 SIDE_CHAIN REMARK 500 ARG A 47 0.23 SIDE_CHAIN REMARK 500 ARG A 49 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1MKN A 1 59 UNP P21741 MK_HUMAN 23 81
SEQRES 1 A 59 LYS LYS LYS ASP LYS VAL LYS LYS GLY GLY PRO GLY SER SEQRES 2 A 59 GLU CYS ALA GLU TRP ALA TRP GLY PRO CYS THR PRO SER SEQRES 3 A 59 SER LYS ASP CYS GLY VAL GLY PHE ARG GLU GLY THR CYS SEQRES 4 A 59 GLY ALA GLN THR GLN ARG ILE ARG CYS ARG VAL PRO CYS SEQRES 5 A 59 ASN TRP LYS LYS GLU PHE GLY
SHEET 1 B1 3 TRP A 20 PRO A 25 0 SHEET 2 B1 3 VAL A 32 CYS A 39 -1 O GLU A 36 N GLY A 21 SHEET 3 B1 3 GLN A 42 VAL A 50 -1 O ILE A 46 N ARG A 35
SSBOND 1 CYS A 15 CYS A 39 1555 1555 2.02 SSBOND 2 CYS A 23 CYS A 48 1555 1555 2.02 SSBOND 3 CYS A 30 CYS A 52 1555 1555 2.02
HYDBND H GLY A 21 O GLU A 36 1555 1555 HYDBND H GLU A 36 O GLY A 21 1555 1555 HYDBND H CYS A 48 O GLY A 33 1555 1555 HYDBND H ARG A 35 O ILE A 46 1555 1555 HYDBND H ILE A 46 O ARG A 35 1555 1555 HYDBND H GLY A 37 O GLN A 44 1555 1555
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000