10 20 30 40 50 60 70 80 1MK3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 28-AUG-02 1MK3
TITLE SOLUTION STRUCTURE OF HUMAN BCL-W PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS REGULATOR BCL-W; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-W; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-29B+
KEYWDS BCL-W PROTEIN, APOPTOTIS, APOPTOSIS
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR A.Y.DENISOV,M.S.MADIRAJU,G.CHEN,A.KHADIR,P.BEAUPARLANT, AUTHOR 2 G.ATTARDO,G.C.SHORE,K.GEHRING
REVDAT 2 24-FEB-09 1MK3 1 VERSN REVDAT 1 03-JUN-03 1MK3 0
JRNL AUTH A.Y.DENISOV,M.S.MADIRAJU,G.CHEN,A.KHADIR, JRNL AUTH 2 P.BEAUPARLANT,G.ATTARDO,G.C.SHORE,K.GEHRING JRNL TITL SOLUTION STRUCTURE OF HUMAN BCL-W: MODULATION OF JRNL TITL 2 LIGAND BINDING BY THE C-TERMINAL HELIX JRNL REF J.BIOL.CHEM. V. 278 21124 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12651847 JRNL DOI 10.1074/JBC.M301798200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE REFINED BY USING STANDARD REMARK 3 PROTOCOL IN CNS WITH RESTRAINTS FROM NOE DISTANCES, BACKBONE REMARK 3 TORSION ANGLES, HYDROGEN BONDS AND RESIDUAL DIPOLAR COUPLINGS
REMARK 4 REMARK 4 1MK3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB016971.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 10 MM NACL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1.4 MM BCL-W PROTEIN U-15N, REMARK 210 13C, 20 MM PHOSPHATE BUFFER; REMARK 210 1.3 MM BCL-W PROTEIN U-15N, 20 REMARK 210 MM PHOSPHATE BUFFER; 0.5 MM REMARK 210 BCL-W PROTEIN U-15N, 6 MG/ML REMARK 210 PF1-PHAGE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB, CBCA(CO)HN, 13C,15N- REMARK 210 EDITED NOESY, HNCO, HNHA, IPAP REMARK 210 -HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 7 176.07 -51.72 REMARK 500 1 PRO A 40 43.26 -70.47 REMARK 500 1 PHE A 56 -135.88 -86.68 REMARK 500 1 ARG A 57 -77.45 -139.57 REMARK 500 1 PHE A 60 -71.03 -65.03 REMARK 500 1 ALA A 64 -71.92 -65.57 REMARK 500 1 HIS A 68 -75.01 -59.21 REMARK 500 1 THR A 70 108.69 -50.90 REMARK 500 1 ALA A 74 -155.63 -72.72 REMARK 500 1 GLN A 87 81.92 -46.90 REMARK 500 1 PRO A 90 40.50 -71.82 REMARK 500 1 ALA A 97 -74.48 -75.50 REMARK 500 1 MET A 114 43.36 -100.48 REMARK 500 1 ARG A 160 -34.21 -39.19 REMARK 500 1 SER A 168 25.77 -70.88 REMARK 500 1 LEU A 171 -162.26 -122.97 REMARK 500 1 HIS A 173 -171.15 -63.73 REMARK 500 2 PRO A 3 109.65 -51.74 REMARK 500 2 PRO A 7 104.95 -51.72 REMARK 500 2 TYR A 26 -61.99 -145.53 REMARK 500 2 PRO A 36 107.41 -53.49 REMARK 500 2 PRO A 40 15.68 -68.58 REMARK 500 2 PHE A 56 -139.63 -91.28 REMARK 500 2 ARG A 57 -75.95 -140.47 REMARK 500 2 PHE A 60 -70.80 -56.86 REMARK 500 2 ASP A 62 -74.34 -55.30 REMARK 500 2 HIS A 68 -73.36 -52.21 REMARK 500 2 THR A 70 108.13 -54.71 REMARK 500 2 PRO A 71 102.16 -49.51 REMARK 500 2 ALA A 74 -154.17 -71.12 REMARK 500 2 GLN A 87 81.89 -47.06 REMARK 500 2 PRO A 90 39.10 -71.88 REMARK 500 2 PHE A 101 -71.99 -63.16 REMARK 500 2 LYS A 112 1.67 -66.43 REMARK 500 2 MET A 114 44.92 -100.73 REMARK 500 2 THR A 131 -73.86 -78.98 REMARK 500 2 TYR A 150 32.57 -89.45 REMARK 500 2 SER A 168 14.60 -66.46 REMARK 500 2 HIS A 174 -167.73 -108.33 REMARK 500 2 HIS A 177 -169.29 -116.62 REMARK 500 3 PRO A 3 -75.67 -53.55 REMARK 500 3 VAL A 27 91.18 -56.49 REMARK 500 3 PHE A 56 -145.37 -92.01 REMARK 500 3 ARG A 57 -78.18 -140.23 REMARK 500 3 PHE A 60 -71.52 -39.50 REMARK 500 3 ASP A 62 -74.79 -59.02 REMARK 500 3 ALA A 64 -71.83 -59.36 REMARK 500 3 HIS A 68 -73.38 -54.60 REMARK 500 3 VAL A 69 -65.02 -29.73 REMARK 500 3 THR A 70 109.78 -50.28 REMARK 500 3 PRO A 71 101.88 -49.39 REMARK 500 3 ALA A 74 -149.55 -72.21 REMARK 500 3 GLN A 87 81.54 -46.08 REMARK 500 3 PRO A 90 44.59 -71.01 REMARK 500 3 ALA A 97 -70.70 -67.54 REMARK 500 3 PHE A 98 -33.99 -39.80 REMARK 500 3 THR A 131 -73.98 -78.98 REMARK 500 3 TYR A 150 30.00 -89.73 REMARK 500 3 ARG A 159 -73.35 -53.20 REMARK 500 3 ARG A 160 -32.98 -39.59 REMARK 500 4 VAL A 13 -70.18 -63.71 REMARK 500 4 VAL A 17 -70.35 -68.35 REMARK 500 4 ALA A 30 -69.56 -124.35 REMARK 500 4 ALA A 38 37.94 -86.79 REMARK 500 4 LEU A 41 -70.01 -68.15 REMARK 500 4 PHE A 56 -141.33 -92.08 REMARK 500 4 ARG A 57 -90.20 -140.70 REMARK 500 4 SER A 61 -75.10 -56.71 REMARK 500 4 HIS A 68 -72.00 -51.68 REMARK 500 4 THR A 70 108.73 -45.18 REMARK 500 4 PRO A 71 104.19 -51.79 REMARK 500 4 ALA A 74 -153.59 -70.03 REMARK 500 4 GLN A 87 81.58 -42.26 REMARK 500 4 PRO A 90 33.19 -72.34 REMARK 500 4 ALA A 97 -72.49 -66.68 REMARK 500 4 LYS A 112 4.88 -63.99 REMARK 500 4 MET A 114 42.69 -99.78 REMARK 500 4 THR A 131 -73.09 -78.64 REMARK 500 4 ARG A 159 -76.00 -56.86 REMARK 500 4 ARG A 160 -32.45 -38.66 REMARK 500 4 HIS A 174 -174.68 -56.42 REMARK 500 5 PRO A 32 28.16 -70.77 REMARK 500 5 PRO A 40 41.31 -70.25 REMARK 500 5 PHE A 56 -142.73 -91.88 REMARK 500 5 ARG A 57 -91.08 -141.63 REMARK 500 5 PHE A 60 -70.40 -39.18 REMARK 500 5 VAL A 69 -63.40 -29.47 REMARK 500 5 THR A 70 108.31 -49.86 REMARK 500 5 PRO A 71 91.94 -54.15 REMARK 500 5 ALA A 74 -151.83 -67.71 REMARK 500 5 GLN A 87 81.22 -43.24 REMARK 500 5 PRO A 90 39.24 -68.90 REMARK 500 5 VAL A 110 -71.03 -57.82 REMARK 500 5 MET A 114 60.34 -107.05 REMARK 500 5 THR A 131 -70.02 -83.56 REMARK 500 5 TYR A 150 36.21 -91.54 REMARK 500 5 GLU A 157 -74.19 -59.96 REMARK 500 5 ARG A 159 -79.77 -51.14 REMARK 500 5 ARG A 170 -176.23 -59.68 REMARK 500 6 PRO A 3 -168.92 -52.83 REMARK 500 6 ALA A 6 69.68 -116.18 REMARK 500 6 VAL A 27 93.05 -59.97 REMARK 500 6 ALA A 30 -166.33 -103.06 REMARK 500 6 PHE A 56 -140.31 -89.18 REMARK 500 6 ARG A 57 -82.29 -135.89 REMARK 500 6 ARG A 58 62.91 -117.63 REMARK 500 6 ASP A 62 -71.19 -63.92 REMARK 500 6 HIS A 68 -76.86 -66.81 REMARK 500 6 VAL A 69 -58.78 -29.56 REMARK 500 6 ALA A 74 -156.53 -70.48 REMARK 500 6 GLN A 87 82.22 -44.85 REMARK 500 6 PRO A 90 40.08 -69.84 REMARK 500 6 MET A 114 58.88 -104.17 REMARK 500 6 SER A 168 21.43 -69.49 REMARK 500 6 VAL A 169 98.06 -46.07 REMARK 500 6 ARG A 170 -81.66 -81.22 REMARK 500 7 PRO A 3 103.05 -52.95 REMARK 500 7 PRO A 7 177.04 -51.13 REMARK 500 7 GLU A 34 50.48 -90.96 REMARK 500 7 ALA A 38 23.40 -78.86 REMARK 500 7 PRO A 40 90.43 -68.70 REMARK 500 7 PHE A 56 -140.98 -88.49 REMARK 500 7 ARG A 57 -74.79 -141.65 REMARK 500 7 PHE A 60 -70.39 -44.99 REMARK 500 7 VAL A 69 -66.61 -29.95 REMARK 500 7 THR A 70 109.84 -41.68 REMARK 500 7 PRO A 71 95.70 -49.48 REMARK 500 7 ALA A 74 -151.47 -69.69 REMARK 500 7 GLN A 87 82.22 -46.02 REMARK 500 7 MET A 114 55.27 -102.46 REMARK 500 7 SER A 168 36.67 -82.57 REMARK 500 7 HIS A 175 -163.19 -61.17 REMARK 500 7 HIS A 177 107.62 -58.75 REMARK 500 8 PHE A 56 -137.91 -89.03 REMARK 500 8 ARG A 57 -61.36 -136.81 REMARK 500 8 PHE A 60 -70.16 -66.57 REMARK 500 8 HIS A 68 -79.39 -61.64 REMARK 500 8 SER A 73 -173.76 -69.40 REMARK 500 8 ALA A 74 -156.76 -67.77 REMARK 500 8 GLN A 87 80.80 -40.34 REMARK 500 8 PRO A 90 34.46 -73.29 REMARK 500 8 ALA A 97 -70.24 -67.56 REMARK 500 8 PHE A 101 -74.82 -61.52 REMARK 500 8 MET A 114 52.04 -101.91 REMARK 500 8 SER A 168 2.56 -63.13 REMARK 500 8 VAL A 169 38.16 -81.38 REMARK 500 9 PRO A 7 105.07 -51.28 REMARK 500 9 GLN A 23 20.44 -72.32 REMARK 500 9 PHE A 56 -138.87 -90.80 REMARK 500 9 ARG A 57 -72.98 -139.61 REMARK 500 9 THR A 59 -31.19 -39.90 REMARK 500 9 ASP A 62 -70.15 -68.91 REMARK 500 9 HIS A 68 -75.02 -62.18 REMARK 500 9 PRO A 71 91.37 -56.13 REMARK 500 9 ALA A 74 -159.45 -67.61 REMARK 500 9 GLN A 87 82.18 -45.16 REMARK 500 9 PRO A 90 52.10 -69.11 REMARK 500 9 MET A 114 41.67 -100.72 REMARK 500 9 THR A 131 -71.62 -79.81 REMARK 500 9 GLU A 157 -71.37 -59.28 REMARK 500 9 ARG A 159 -78.51 -50.02 REMARK 500 9 ARG A 160 -31.81 -39.55 REMARK 500 9 SER A 168 14.60 -67.62 REMARK 500 9 HIS A 173 -168.91 -63.47 REMARK 500 9 HIS A 176 105.37 -53.12 REMARK 500 10 PRO A 32 30.05 -71.48 REMARK 500 10 PRO A 40 3.25 -69.24 REMARK 500 10 PHE A 56 -143.37 -91.51 REMARK 500 10 ARG A 57 -81.83 -140.70 REMARK 500 10 PHE A 60 -70.80 -42.28 REMARK 500 10 VAL A 69 -63.69 -29.89 REMARK 500 10 THR A 70 107.00 -54.51 REMARK 500 10 PRO A 71 92.23 -50.05 REMARK 500 10 ALA A 74 -153.75 -67.02 REMARK 500 10 GLN A 87 80.97 -43.92 REMARK 500 10 PRO A 90 43.70 -70.79 REMARK 500 10 ALA A 97 -70.53 -70.94 REMARK 500 10 MET A 114 53.55 -100.71 REMARK 500 10 THR A 131 -73.21 -79.64 REMARK 500 10 TYR A 150 35.10 -90.20 REMARK 500 10 GLU A 157 -71.40 -62.59 REMARK 500 10 ARG A 159 -77.58 -53.39 REMARK 500 10 HIS A 174 -167.30 -106.72 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1MK3 A 1 170 UNP Q92843 BCLW_HUMAN 2 171
SEQADV 1MK3 VAL A 116 UNP Q92843 PRO 117 ENGINEERED SEQADV 1MK3 LEU A 171 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 GLU A 172 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 HIS A 173 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 HIS A 174 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 HIS A 175 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 HIS A 176 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 HIS A 177 UNP Q92843 EXPRESSION TAG SEQADV 1MK3 HIS A 178 UNP Q92843 EXPRESSION TAG
SEQRES 1 A 178 ALA THR PRO ALA SER ALA PRO ASP THR ARG ALA LEU VAL SEQRES 2 A 178 ALA ASP PHE VAL GLY TYR LYS LEU ARG GLN LYS GLY TYR SEQRES 3 A 178 VAL CYS GLY ALA GLY PRO GLY GLU GLY PRO ALA ALA ASP SEQRES 4 A 178 PRO LEU HIS GLN ALA MET ARG ALA ALA GLY ASP GLU PHE SEQRES 5 A 178 GLU THR ARG PHE ARG ARG THR PHE SER ASP LEU ALA ALA SEQRES 6 A 178 GLN LEU HIS VAL THR PRO GLY SER ALA GLN GLN ARG PHE SEQRES 7 A 178 THR GLN VAL SER ASP GLU LEU PHE GLN GLY GLY PRO ASN SEQRES 8 A 178 TRP GLY ARG LEU VAL ALA PHE PHE VAL PHE GLY ALA ALA SEQRES 9 A 178 LEU CYS ALA GLU SER VAL ASN LYS GLU MET GLU VAL LEU SEQRES 10 A 178 VAL GLY GLN VAL GLN GLU TRP MET VAL ALA TYR LEU GLU SEQRES 11 A 178 THR ARG LEU ALA ASP TRP ILE HIS SER SER GLY GLY TRP SEQRES 12 A 178 ALA GLU PHE THR ALA LEU TYR GLY ASP GLY ALA LEU GLU SEQRES 13 A 178 GLU ALA ARG ARG LEU ARG GLU GLY ASN TRP ALA SER VAL SEQRES 14 A 178 ARG LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 ASP A 8 GLN A 23 1 16 HELIX 2 2 PRO A 40 PHE A 56 1 17 HELIX 3 3 ARG A 58 THR A 70 1 13 HELIX 4 4 ALA A 74 GLN A 87 1 14 HELIX 5 5 TRP A 92 LYS A 112 1 21 HELIX 6 6 MET A 114 ARG A 132 1 19 HELIX 7 7 LEU A 133 GLY A 141 1 9 HELIX 8 8 GLY A 142 ALA A 148 1 7 HELIX 9 9 ALA A 154 SER A 168 1 15
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000