10 20 30 40 50 60 70 80 1MI9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 23-AUG-02 1MI9
TITLE PREDICTED 3-D MODEL OF CASPASE-6 COMPLEX WITH AC-IETD TITLE 2 INHIBITOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-142; COMPND 5 EC: 3.4.22.-; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CASPASE-6; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 143-235; COMPND 10 EC: 3.4.22.-; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: (ACE)IET(ASA); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: CHEMICALLY SYNTHESIZED
KEYWDS CASPASE-6, CASPASE-6 COMPLEX WITH AC-IETD, HOMOLOGY MODEL KEYWDS 2 OF CASPASE-6.
EXPDTA THEORETICAL MODEL
AUTHOR R.SATTAR,A.ABBASI,A.SALIM
REVDAT 1 11-SEP-02 1MI9 0
JRNL AUTH R.SATTAR,A.ABBASI,A.SALIM JRNL TITL HOMOLOGY MODEL OF CASPASE-6 WITH AC-IETD INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MI9 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-2002. REMARK 100 THE RCSB ID CODE IS RCSB016932.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: MODEL IS BASED UPON THE COORDINATES OF 1QTN X-RAY REMARK 220 CRYSTAL STRUCTURE OF STRUCTURE OF CASPOASE-8
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 N LYS A 3 CA LYS B 229 0.29 REMARK 500 NH2 ARG A 31 NE ARG B 165 0.50 REMARK 500 CB ARG A 33 O THR B 167 0.55 REMARK 500 N ARG A 33 OG1 THR B 167 0.64 REMARK 500 NZ LYS A 123 CE2 PHE B 151 0.66 REMARK 500 OH TYR A 4 CG MET B 226 0.67 REMARK 500 CA LYS A 3 C LYS B 229 0.72 REMARK 500 CD2 LEU A 41 CG2 ILE B 174 0.79 REMARK 500 CZ TYR A 4 SD MET B 226 0.81 REMARK 500 CB GLU A 2 O THR B 228 0.82 REMARK 500 CG ARG A 44 CB CYS B 178 0.87 REMARK 500 NZ LYS A 123 CZ PHE B 151 0.89 REMARK 500 OD1 ASP A 37 CA GLY B 170 0.91 REMARK 500 CA LYS A 3 O LYS B 229 0.94 REMARK 500 OE1 GLN A 134 CB LYS B 217 0.95 REMARK 500 CE2 TYR A 4 SD MET B 226 0.97 REMARK 500 CD2 TYR A 4 CD2 LEU B 227 1.06 REMARK 500 C ARG A 32 OG1 THR B 167 1.10 REMARK 500 ND2 ASN A 40 OE1 GLN B 175 1.11 REMARK 500 CG ARG A 44 SG CYS B 178 1.11 REMARK 500 OD1 ASP A 37 C GLY B 170 1.14 REMARK 500 CE LYS A 123 CE2 PHE B 151 1.14 REMARK 500 CB LYS A 3 N LYS B 230 1.17 REMARK 500 CA GLU A 2 O THR B 228 1.18 REMARK 500 O GLN A 128 OD2 ASA C 504 1.19 REMARK 500 CD ARG A 44 C CYS B 178 1.22 REMARK 500 N LYS A 3 C LYS B 229 1.24 REMARK 500 CA ARG A 33 O THR B 167 1.25 REMARK 500 CZ TYR A 4 CG MET B 226 1.28 REMARK 500 ND2 ASN A 40 CD GLN B 175 1.28 REMARK 500 CD1 LEU A 48 CD2 LEU B 181 1.30 REMARK 500 O GLY A 120 CB ASP B 150 1.33 REMARK 500 CA ALA A 129 CB ASA C 504 1.34 REMARK 500 SG CYS A 130 CB THR C 503 1.35 REMARK 500 OE1 GLN A 134 CG LYS B 217 1.36 REMARK 500 CB LYS A 3 C LYS B 229 1.38 REMARK 500 OH TYR A 4 CB MET B 226 1.40 REMARK 500 SG CYS A 130 CG2 THR C 503 1.40 REMARK 500 C GLU A 2 CA LYS B 229 1.44 REMARK 500 CD ARG A 44 O CYS B 178 1.45 REMARK 500 CZ ARG A 31 NE ARG B 165 1.46 REMARK 500 O GLN A 128 CG ASA C 504 1.46 REMARK 500 NE ARG A 31 NH2 ARG B 165 1.47 REMARK 500 ND1 HIS B 164 CD1 ILE C 501 1.47 REMARK 500 CB ARG A 33 C THR B 167 1.48 REMARK 500 NH2 ARG A 31 CD ARG B 165 1.49 REMARK 500 CB LYS A 3 CA LYS B 230 1.50 REMARK 500 CG LYS A 3 O LYS B 230 1.50 REMARK 500 CB ALA A 129 O ASA C 504 1.50 REMARK 500 CB GLU A 2 C THR B 228 1.51 REMARK 500 N LYS A 3 N LYS B 229 1.51 REMARK 500 N ARG A 33 CB THR B 167 1.57 REMARK 500 CD ARG A 44 CA CYS B 178 1.57 REMARK 500 CG ASN A 40 OE1 GLN B 175 1.60 REMARK 500 CD1 LEU A 41 CD1 ILE B 174 1.60 REMARK 500 CB ARG A 44 SG CYS B 178 1.60 REMARK 500 CE1 TYR A 4 CA ASP B 150 1.61 REMARK 500 CA LYS A 3 CA LYS B 229 1.62 REMARK 500 CB LYS A 3 C LYS B 230 1.62 REMARK 500 OD1 ASP A 37 N SER B 171 1.62 REMARK 500 CG ASP A 37 N SER B 171 1.65 REMARK 500 CB ASN A 40 NE2 GLN B 175 1.65 REMARK 500 C GLU A 2 N LYS B 229 1.66 REMARK 500 N ASP A 136 CD1 ILE B 215 1.66 REMARK 500 CE1 HIS B 164 CG1 ILE C 501 1.68 REMARK 500 O SER A 87 OD1 ASA C 504 1.69 REMARK 500 OH TYR A 4 SD MET B 226 1.71 REMARK 500 CZ ARG A 31 CZ ARG B 165 1.71 REMARK 500 CG ARG A 44 CA CYS B 178 1.71 REMARK 500 NE ARG A 31 CZ ARG B 165 1.72 REMARK 500 CG ASN A 40 NE2 GLN B 175 1.72 REMARK 500 CD PRO A 122 O ASP B 150 1.74 REMARK 500 N LYS A 3 CB LYS B 229 1.75 REMARK 500 CG LYS A 3 N LYS B 230 1.75 REMARK 500 O SER A 87 CA ASA C 504 1.75 REMARK 500 OE1 GLN A 134 CA LYS B 217 1.75 REMARK 500 O LYS A 3 CB LYS B 229 1.76 REMARK 500 CB LYS A 3 O LYS B 229 1.77 REMARK 500 NH2 ARG A 31 CZ ARG B 165 1.78 REMARK 500 CG ASN A 40 CD GLN B 175 1.78 REMARK 500 OD2 ASP A 37 N SER B 171 1.79 REMARK 500 CA ALA A 129 CA ASA C 504 1.80 REMARK 500 C GLU A 2 O THR B 228 1.82 REMARK 500 CE2 TYR A 4 CE MET B 226 1.82 REMARK 500 O GLN A 128 CB ASA C 504 1.82 REMARK 500 CB ALA A 129 C ASA C 504 1.82 REMARK 500 N CYS A 130 C ASA C 504 1.84 REMARK 500 N ASP A 136 CG1 ILE B 215 1.84 REMARK 500 O GLU A 30 OE2 GLU C 502 1.85 REMARK 500 CG ASP A 37 C GLY B 170 1.85 REMARK 500 CA HIS A 135 CG1 ILE B 215 1.85 REMARK 500 N ALA A 129 CB ASA C 504 1.86 REMARK 500 C GLU A 2 C THR B 228 1.87 REMARK 500 CE1 HIS B 164 CD1 ILE C 501 1.87 REMARK 500 CD2 LEU A 41 CB ILE B 174 1.88 REMARK 500 CB LYS A 3 O LYS B 230 1.89 REMARK 500 CA ARG A 31 OE1 GLU C 502 1.89 REMARK 500 ND1 HIS B 164 CG1 ILE C 501 1.90 REMARK 500 CG TYR A 4 CD2 LEU B 227 1.91 REMARK 500 NE ARG A 44 O CYS B 178 1.91 REMARK 500 N PRO A 122 O ASP B 150 1.91 REMARK 500 CE LYS A 123 CD2 PHE B 151 1.91 REMARK 500 CA ARG A 32 OG1 THR B 167 1.92 REMARK 500 CG LEU A 41 CG2 ILE B 174 1.92 REMARK 500 CA ARG A 44 SG CYS B 178 1.92 REMARK 500 CD ARG A 44 CB CYS B 178 1.92 REMARK 500 CE1 TYR A 4 CG MET B 226 1.93 REMARK 500 CA LYS A 3 N LYS B 230 1.94 REMARK 500 CE1 TYR A 4 C ASP B 150 1.95 REMARK 500 CA ALA A 129 C ASA C 504 1.95 REMARK 500 CE1 TYR A 4 SD MET B 226 1.96 REMARK 500 NZ LYS A 123 CD2 PHE B 151 1.96 REMARK 500 C ARG A 33 O THR B 167 1.97 REMARK 500 CG ASP A 37 CA GLY B 170 1.97 REMARK 500 CB ASN A 40 CD GLN B 175 1.99 REMARK 500 CD LYS A 3 N LYS B 230 2.00 REMARK 500 CA ARG A 33 C THR B 167 2.00 REMARK 500 C GLN A 128 OD2 ASA C 504 2.00 REMARK 500 C HIS A 135 CG1 ILE B 215 2.00 REMARK 500 N GLU A 2 O THR B 228 2.01 REMARK 500 C LYS A 3 O LYS B 229 2.03 REMARK 500 CD2 TYR A 4 CG LEU B 227 2.03 REMARK 500 CB ASN A 40 OE1 GLN B 175 2.03 REMARK 500 CG1 ILE A 124 N CYS B 154 2.04 REMARK 500 CG ARG A 33 O THR B 167 2.05 REMARK 500 O SER A 87 CB ASA C 504 2.05 REMARK 500 ND2 ASN A 40 NE2 GLN B 175 2.06 REMARK 500 O SER A 87 CG ASA C 504 2.06 REMARK 500 C GLN A 128 CB ASA C 504 2.06 REMARK 500 CA ARG A 33 OG1 THR B 167 2.07 REMARK 500 CA GLU A 2 C THR B 228 2.08 REMARK 500 CB ARG A 32 OG1 THR B 167 2.08 REMARK 500 CG LYS A 3 C LYS B 230 2.09 REMARK 500 CA GLY A 120 O ALA B 149 2.09 REMARK 500 CD2 TYR A 4 SD MET B 226 2.10 REMARK 500 CE LYS A 123 CZ PHE B 151 2.10 REMARK 500 C GLU A 2 C LYS B 229 2.11 REMARK 500 OH TYR A 4 CA MET B 226 2.11 REMARK 500 CD1 TYR A 4 CA ASP B 150 2.12 REMARK 500 CG MET A 6 CE1 PHE B 233 2.12 REMARK 500 OH TYR A 4 C MET B 226 2.13 REMARK 500 N ARG A 33 CA THR B 167 2.13 REMARK 500 C ALA A 129 C ASA C 504 2.13 REMARK 500 CD GLN A 134 CB LYS B 217 2.13 REMARK 500 N LYS A 3 O LYS B 229 2.14 REMARK 500 CB ARG A 44 CB CYS B 178 2.14 REMARK 500 NZ LYS A 123 CE1 PHE B 151 2.14 REMARK 500 CA LYS A 3 N LYS B 229 2.15 REMARK 500 O ARG A 33 O THR B 167 2.15 REMARK 500 CB ALA A 129 CB ASA C 504 2.15 REMARK 500 C GLN A 134 CG2 ILE B 215 2.15 REMARK 500 C LYS A 3 C LYS B 229 2.16 REMARK 500 CE2 TYR A 4 CD2 LEU B 227 2.18 REMARK 500 CD ARG A 33 CG2 VAL B 168 2.18 REMARK 500 N ARG A 44 SG CYS B 178 2.18 REMARK 500 CD ARG A 44 SG CYS B 178 2.18 REMARK 500 CD LYS A 123 CE2 PHE B 151 2.18 REMARK 500 O ARG A 32 OG1 THR B 167 2.19 REMARK 500 OD2 ASP A 37 C GLY B 170 2.19 REMARK 500 C GLY A 120 O ALA B 149 2.19 REMARK 500 CA HIS A 135 CB ILE B 215 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 18 C HIS A 19 N 0.127 REMARK 500 PHE B 208 CB PHE B 208 CG 0.133 REMARK 500 ACE C 500 C ILE C 501 N 0.131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE B 208 CD1 - CG - CD2 ANGL. DEV. =-44.8 DEGREES REMARK 500 PHE B 208 CB - CG - CD1 ANGL. DEV. = 32.3 DEGREES REMARK 500 PHE B 208 CG - CD1 - CE1 ANGL. DEV. =-72.1 DEGREES REMARK 500 PHE B 208 CG - CD2 - CE2 ANGL. DEV. =-30.1 DEGREES REMARK 500 PHE B 208 CD1 - CE1 - CZ ANGL. DEV. =-104.4 DEGREES REMARK 500 PHE B 208 CE1 - CZ - CE2 ANGL. DEV. =-67.2 DEGREES REMARK 500 PHE B 208 CZ - CE2 - CD2 ANGL. DEV. =-41.5 DEGREES REMARK 500 ACE C 500 O - C - N ANGL. DEV. = 43.4 DEGREES REMARK 500 ILE C 501 C - N - CA ANGL. DEV. =-28.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 32 -121.09 -3.89 REMARK 500 ILE A 101 133.86 116.70
DBREF 1MI9 A 1 142 UNP P55212 ICE6_HUMAN 34 175 DBREF 1MI9 B 143 235 UNP P55212 ICE6_HUMAN 198 290
SEQRES 1 A 142 ALA GLU LYS TYR LYS MET ASP HIS ARG ARG ARG GLY ILE SEQRES 2 A 142 ALA LEU ILE PHE ASN HIS GLU ARG PHE PHE TRP HIS LEU SEQRES 3 A 142 THR LEU PRO GLU ARG ARG ARG THR CYS ALA ASP ARG ASP SEQRES 4 A 142 ASN LEU THR ARG ARG PHE SER ASP LEU GLY PHE GLU VAL SEQRES 5 A 142 LYS CYS PHE ASN ASP LEU LYS ALA GLU GLU LEU LEU LEU SEQRES 6 A 142 LYS ILE HIS GLU VAL SER THR VAL SER HIS ALA ASP ALA SEQRES 7 A 142 ASP CYS PHE VAL CYS VAL PHE LEU SER HIS GLY GLU GLY SEQRES 8 A 142 ASN HIS ILE TYR ALA TYR ASP ALA LYS ILE GLU ILE GLN SEQRES 9 A 142 THR LEU THR GLY LEU PHE LYS GLY ASP LYS CYS HIS SER SEQRES 10 A 142 LEU VAL GLY LYS PRO LYS ILE PHE ILE ILE GLN ALA CYS SEQRES 11 A 142 ARG GLY ASN GLN HIS ASP VAL PRO VAL ILE PRO LEU SEQRES 1 B 93 TYR THR LEU PRO ALA GLY ALA ASP PHE LEU MET CYS TYR SEQRES 2 B 93 SER VAL ALA GLU GLY TYR TYR SER HIS ARG GLU THR VAL SEQRES 3 B 93 ASN GLY SER TRP TYR ILE GLN ASP LEU CYS GLU MET LEU SEQRES 4 B 93 GLY LYS TYR GLY SER SER LEU GLU PHE THR GLU LEU LEU SEQRES 5 B 93 THR LEU VAL ASN ARG LYS VAL SER GLN ARG ARG VAL ASP SEQRES 6 B 93 PHE CYS LYS ASP PRO SER ALA ILE GLY LYS LYS GLN VAL SEQRES 7 B 93 PRO CYS PHE ALA SER MET LEU THR LYS LYS LEU HIS PHE SEQRES 8 B 93 PHE PRO SEQRES 1 C 5 ACE ILE GLU THR ASA
MODRES 1MI9 ASA C 504 ASP ASPARTIC ALDEHYDE
HET ACE C 500 3 HET ASA C 504 8
HETNAM ACE ACETYL GROUP HETNAM ASA ASPARTIC ALDEHYDE
FORMUL 3 ACE C2 H4 O FORMUL 3 ASA C4 H7 N O3
HELIX 1 1 PHE A 23 THR A 27 5 5 HELIX 2 2 ARG A 33 LEU A 48 1 16 HELIX 3 3 LYS A 59 THR A 72 1 14 HELIX 4 4 ILE A 103 GLY A 108 1 6 HELIX 5 5 LEU A 109 LYS A 111 5 3 HELIX 6 6 CYS A 115 VAL A 119 5 5 HELIX 7 7 TRP B 172 GLY B 185 1 14 HELIX 8 8 GLU B 189 SER B 202 1 14 HELIX 9 9 SER B 202 ASP B 207 1 6
SHEET 1 A 4 GLU A 51 ASN A 56 0 SHEET 2 A 4 ILE A 13 ASN A 18 1 N ALA A 14 O GLU A 51 SHEET 3 A 4 PHE A 81 LEU A 86 1 O LEU A 86 N PHE A 17 SHEET 4 A 4 LYS A 123 GLN A 128 1 O GLN A 128 N PHE A 85 SHEET 1 B 2 GLY A 89 GLU A 90 0 SHEET 2 B 2 HIS A 93 ILE A 94 -1 O HIS A 93 N GLU A 90 SHEET 1 C 2 LEU B 152 TYR B 155 0 SHEET 2 C 2 CYS B 222 SER B 225 -1 O ALA B 224 N MET B 153 SHEET 1 D 3 GLY B 170 SER B 171 0 SHEET 2 D 3 HIS B 164 GLU B 166 -1 N GLU B 166 O GLY B 170 SHEET 3 D 3 GLU C 502 THR C 503 -1 O GLU C 502 N ARG B 165
CISPEP 1 ARG A 9 ARG A 10 0 0.43
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000