10 20 30 40 50 60 70 80 1MHF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER UNKNOWN FUNCTION 20-AUG-02 1MHF
TITLE THEORITICAL MODEL OF HYPOTHETICAL PROTIEN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HP0162; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: BACTERIA
KEYWDS HYPOTHETICAL PROTEIN, COMPLETE PROTEOME
EXPDTA THEORETICAL MODEL
AUTHOR K.SIDDHARTHA,A.JAYASRI
REVDAT 1 04-SEP-02 1MHF 0
JRNL AUTH K.SIDDHARTHA,A.JAYASRI JRNL TITL THEORITICAL MODEL OF HYPOTHETICAL PROTIEN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MHF COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-2002. REMARK 100 THE RCSB ID CODE IS RCSB016912.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: SEQUENCE IS TAKEN FROM SWISSPROT AND BLASTED AGAINST REMARK 220 PDB. TWO REFERENCE PROTEIN ARE TAKEN WITH 35% & 30% REMARK 220 IDENTITY WITH RESOLUTION 1.72 A & 1.72 A. ALL THE QUREY REMARK 220 AND REFERENCE SEQUENCES IS MULTIPLE ALLIENED IN REMARK 220 CLUSTALW. THIS TWO SEQUENCE ARE THEN LOADED IN REMARK 220 INSIGHTII. ALL THE SEQUENCE ARE ALLIENED MANUALLY REMARK 220 REFERENCE TO CLUSTALW. THEN SEQUENCE IS SUBMITTED TO REMARK 220 MODELER. WHICH DOES AUTOMATIC REFINEMENT USING REMARK 220 CONJUGATE_GRADIENT AND MOLECULAR DYNAMIC SIMULATION
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 198 N - CA - C ANGL. DEV. =-15.8 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 143.59 88.37 REMARK 500 SER A 72 -140.23 171.52 REMARK 500 ARG A 203 -104.27 -151.76
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KON RELATED DB: PDB REMARK 900 1KON CONTAINS E.COLI YEBC REMARK 900 RELATED ID: 1LFP RELATED DB: PDB REMARK 900 1LFP CONTAINS A CONSERVED HYPOTHETICAL PROTEIN AQ1575
DBREF 1MHF A 1 240 UNP O24970 Y162_HELPY 1 240
SEQRES 1 A 240 MET GLY ARG ALA PHE GLU TYR ARG ARG ALA ALA LYS GLU SEQRES 2 A 240 LYS ARG TRP ASP LYS MET SER LYS VAL PHE PRO LYS LEU SEQRES 3 A 240 ALA LYS ALA ILE THR LEU ALA ALA LYS ASP GLY GLY SER SEQRES 4 A 240 GLU PRO ASP THR ASN ALA LYS LEU ARG THR ALA ILE LEU SEQRES 5 A 240 ASN ALA LYS ALA GLN ASN MET PRO LYS ASP ASN ILE ASP SEQRES 6 A 240 ALA ALA ILE LYS ARG ALA SER SER LYS GLU GLY ASN LEU SEQRES 7 A 240 SER GLU ILE THR TYR GLU GLY LYS ALA ASN PHE GLY VAL SEQRES 8 A 240 LEU ILE ILE MET GLU CYS MET THR ASP ASN PRO THR ARG SEQRES 9 A 240 THR ILE ALA ASN LEU LYS SER TYR PHE ASN LYS THR GLN SEQRES 10 A 240 GLY ALA SER ILE VAL PRO ASN GLY SER LEU GLU PHE MET SEQRES 11 A 240 PHE ASN ARG LYS SER VAL PHE GLU CYS LEU LYS ASN GLU SEQRES 12 A 240 VAL GLU ASN LEU LYS LEU SER LEU GLU ASP LEU GLU PHE SEQRES 13 A 240 ALA LEU ILE ASP TYR GLY LEU GLU GLU LEU GLU GLU VAL SEQRES 14 A 240 GLU ASP LYS ILE ILE ILE ARG GLY ASP TYR ASN SER PHE SEQRES 15 A 240 LYS LEU LEU ASN GLU GLY PHE GLU SER LEU LYS LEU PRO SEQRES 16 A 240 ILE LEU LYS ALA SER LEU GLN ARG ILE ALA THR THR PRO SEQRES 17 A 240 ILE GLU LEU ASN ASP GLU GLN MET GLU LEU THR GLU LYS SEQRES 18 A 240 LEU LEU ASP ARG ILE GLU ASP ASP ASP ASP VAL VAL ALA SEQRES 19 A 240 LEU TYR THR ASN ILE GLU
HELIX 1 1 LYS A 14 GLY A 38 1 25 HELIX 2 2 ASN A 44 ASN A 58 1 15 HELIX 3 3 PRO A 60 ARG A 70 1 11 HELIX 4 4 ASN A 88 GLY A 90 5 3 HELIX 5 5 ASN A 101 LYS A 115 1 15 HELIX 6 6 SER A 126 PHE A 131 5 6 HELIX 7 7 GLU A 145 ALA A 157 1 13 HELIX 8 8 ILE A 174 ARG A 176 5 3 HELIX 9 9 GLY A 177 GLU A 187 1 11 HELIX 10 10 ASN A 212 ASP A 229 1 18
SHEET 1 A 4 SER A 120 ILE A 121 0 SHEET 2 A 4 SER A 79 ALA A 87 -1 N LYS A 86 O SER A 120 SHEET 3 A 4 VAL A 91 THR A 99 -1 O MET A 95 N TYR A 83 SHEET 4 A 4 VAL A 232 THR A 237 -1 O ALA A 234 N GLU A 96 SHEET 1 B 4 ASP A 160 GLY A 162 0 SHEET 2 B 4 GLU A 168 ILE A 173 -1 O GLU A 170 N GLY A 162 SHEET 3 B 4 SER A 135 LEU A 140 -1 N SER A 135 O ILE A 173 SHEET 4 B 4 LEU A 194 ILE A 196 -1 O ILE A 196 N VAL A 136
CISPEP 1 ALA A 71 SER A 72 0 0.81
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000