10 20 30 40 50 60 70 80 1MFV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 13-AUG-02 1MFV
TITLE PROBING THE ROLE OF A MOBILE LOOP IN HUMAN SLAIVARY AMYLASE: TITLE 2 STRUCTURAL STUDIES ON THE LOOP-DELETED ENZYME
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE, SALIVARY; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PVL1392
KEYWDS AMYLASE, MUTAGENESIS, ACARBOSE, INHIBITOR, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR N.RAMASUBBU,C.RAGUNATH,P.J.MISHRA
REVDAT 5 28-JUL-09 1MFV 1 HET HETATM REVDAT 4 24-FEB-09 1MFV 1 VERSN REVDAT 3 21-MAR-06 1MFV 1 COMPND REMARK MASTER REVDAT 2 27-MAY-03 1MFV 1 JRNL REMARK REVDAT 1 20-NOV-02 1MFV 0
JRNL AUTH N.RAMASUBBU,C.RAGUNATH,P.J.MISHRA JRNL TITL PROBING THE ROLE OF A MOBILE LOOP IN SUBSTRATE JRNL TITL 2 BINDING AND ENZYME ACTIVITY OF HUMAN SALIVARY JRNL TITL 3 AMYLASE. JRNL REF J.MOL.BIOL. V. 325 1061 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12527308 JRNL DOI 10.1016/S0022-2836(02)01326-8
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 31608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4171 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5662 ; 1.317 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 6.248 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3246 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1956 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2452 ; 0.661 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3940 ; 1.221 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 2.003 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1722 ; 2.966 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MFV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016880.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34179 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : 0.37000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB CODE 1SMD REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD, PH 9.0, VAPORDIFFUSION, REMARK 280 COMBINED WITH SOAKING WITH INHIBITOR AT 1 MM CONCENTRATION, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.84050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.22400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.59850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.22400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.84050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.59850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 212 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 31 -59.47 -140.48 REMARK 500 MET A 102 -146.46 -98.41 REMARK 500 ASP A 317 63.89 -111.01 REMARK 500 SER A 414 -106.39 -129.67 REMARK 500 ASN A 459 66.01 35.41 REMARK 500 PRO A 486 47.79 -80.37 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 497 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 640 O REMARK 620 2 HOH A 725 O 147.8 REMARK 620 3 HIS A 201 O 83.9 80.6 REMARK 620 4 ARG A 158 O 81.2 69.0 82.9 REMARK 620 5 ASN A 100 OD1 96.2 106.0 73.2 156.2 REMARK 620 6 ASP A 167 OD1 69.0 134.3 144.1 114.3 86.3 REMARK 620 7 HOH A 647 O 145.0 66.0 121.4 122.5 72.0 77.2 REMARK 620 8 ASP A 167 OD2 90.5 93.2 157.6 74.8 129.1 49.6 74.1 REMARK 620 N 1 2 3 4 5 6 7
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HMC A 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGL A 502 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 503 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HMC A 504 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGL A 505 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 506 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGL A 550 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLC A 551 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGC A 552 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 497 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 498
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SMD RELATED DB: PDB REMARK 900 NATIVE ENZYME REMARK 900 RELATED ID: 1C8Q RELATED DB: PDB REMARK 900 RECOMBINANT ENZYME
DBREF 1MFV A 2 496 UNP P04745 AMYS_HUMAN 17 511
SEQADV 1MFV PCA A 1 UNP P04745 INSERTION
SEQRES 1 A 496 PCA TYR SER SER ASN THR GLN GLN GLY ARG THR SER ILE SEQRES 2 A 496 VAL HIS LEU PHE GLU TRP ARG TRP VAL ASP ILE ALA LEU SEQRES 3 A 496 GLU CYS GLU ARG TYR LEU ALA PRO LYS GLY PHE GLY GLY SEQRES 4 A 496 VAL GLN VAL SER PRO PRO ASN GLU ASN VAL ALA ILE HIS SEQRES 5 A 496 ASN PRO PHE ARG PRO TRP TRP GLU ARG TYR GLN PRO VAL SEQRES 6 A 496 SER TYR LYS LEU CYS THR ARG SER GLY ASN GLU ASP GLU SEQRES 7 A 496 PHE ARG ASN MET VAL THR ARG CYS ASN ASN VAL GLY VAL SEQRES 8 A 496 ARG ILE TYR VAL ASP ALA VAL ILE ASN HIS MET CYS GLY SEQRES 9 A 496 ASN ALA VAL SER ALA GLY THR SER SER THR CYS GLY SER SEQRES 10 A 496 TYR PHE ASN PRO GLY SER ARG ASP PHE PRO ALA VAL PRO SEQRES 11 A 496 TYR SER GLY TRP ASP PHE ASN ASP GLY LYS CYS LYS THR SEQRES 12 A 496 GLY SER GLY ASP ILE GLU ASN TYR ASN ASP ALA THR GLN SEQRES 13 A 496 VAL ARG ASP CYS ARG LEU SER GLY LEU LEU ASP LEU ALA SEQRES 14 A 496 LEU GLY LYS ASP TYR VAL ARG SER LYS ILE ALA GLU TYR SEQRES 15 A 496 MET ASN HIS LEU ILE ASP ILE GLY VAL ALA GLY PHE ARG SEQRES 16 A 496 ILE ASP ALA SER LYS HIS MET TRP PRO GLY ASP ILE LYS SEQRES 17 A 496 ALA ILE LEU ASP LYS LEU HIS ASN LEU ASN SER ASN TRP SEQRES 18 A 496 PHE PRO GLU GLY SER LYS PRO PHE ILE TYR GLN GLU VAL SEQRES 19 A 496 ILE ASP LEU GLY GLY GLU PRO ILE LYS SER SER ASP TYR SEQRES 20 A 496 PHE GLY ASN GLY ARG VAL THR GLU PHE LYS TYR GLY ALA SEQRES 21 A 496 LYS LEU GLY THR VAL ILE ARG LYS TRP ASN GLY GLU LYS SEQRES 22 A 496 MET SER TYR LEU LYS ASN TRP GLY GLU GLY TRP GLY PHE SEQRES 23 A 496 MET PRO SER ASP ARG ALA LEU VAL PHE VAL ASP ASN HIS SEQRES 24 A 496 ASP ASN GLN ARG GLY HIS GLY ALA GLY GLY ALA SER ILE SEQRES 25 A 496 LEU THR PHE TRP ASP ALA ARG LEU TYR LYS MET ALA VAL SEQRES 26 A 496 GLY PHE MET LEU ALA HIS PRO TYR GLY PHE THR ARG VAL SEQRES 27 A 496 MET SER SER TYR ARG TRP PRO ARG TYR PHE GLU ASN GLY SEQRES 28 A 496 LYS ASP VAL ASN ASP TRP VAL GLY PRO PRO ASN ASP ASN SEQRES 29 A 496 GLY VAL THR LYS GLU VAL THR ILE ASN PRO ASP THR THR SEQRES 30 A 496 CYS GLY ASN ASP TRP VAL CYS GLU HIS ARG TRP ARG GLN SEQRES 31 A 496 ILE ARG ASN MET VAL ASN PHE ARG ASN VAL VAL ASP GLY SEQRES 32 A 496 GLN PRO PHE THR ASN TRP TYR ASP ASN GLY SER ASN GLN SEQRES 33 A 496 VAL ALA PHE GLY ARG GLY ASN ARG GLY PHE ILE VAL PHE SEQRES 34 A 496 ASN ASN ASP ASP TRP THR PHE SER LEU THR LEU GLN THR SEQRES 35 A 496 GLY LEU PRO ALA GLY THR TYR CYS ASP VAL ILE SER GLY SEQRES 36 A 496 ASP LYS ILE ASN GLY ASN CYS THR GLY ILE LYS ILE TYR SEQRES 37 A 496 VAL SER ASP ASP GLY LYS ALA HIS PHE SER ILE SER ASN SEQRES 38 A 496 SER ALA GLU ASP PRO PHE ILE ALA ILE HIS ALA GLU SER SEQRES 39 A 496 LYS LEU
MODRES 1MFV PCA A 1 GLU PYROGLUTAMIC ACID
HET PCA A 1 8 HET HMC A 501 11 HET AGL A 502 10 HET GLC A 503 11 HET HMC A 504 11 HET AGL A 505 10 HET GLC A 506 12 HET AGL A 550 10 HET GLC A 551 11 HET BGC A 552 12 HET CA A 497 1 HET CL A 498 1
HETNAM PCA PYROGLUTAMIC ACID HETNAM HMC 5-HYDROXYMETHYL-CHONDURITOL HETNAM AGL 4,6-DIDEOXY-4-AMINO-ALPHA-D-GLUCOSE HETNAM GLC ALPHA-D-GLUCOSE HETNAM BGC BETA-D-GLUCOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION
FORMUL 1 PCA C5 H7 N O3 FORMUL 2 HMC 2(C7 H12 O5) FORMUL 3 AGL 3(C6 H13 N O4) FORMUL 3 GLC 3(C6 H12 O6) FORMUL 6 BGC C6 H12 O6 FORMUL 7 CA CA 2+ FORMUL 8 CL CL 1- FORMUL 9 HOH *243(H2 O)
HELIX 1 1 ARG A 20 TYR A 31 1 12 HELIX 2 2 PRO A 57 GLN A 63 5 7 HELIX 3 3 ASN A 75 VAL A 89 1 15 HELIX 4 4 SER A 132 PHE A 136 5 5 HELIX 5 5 ASP A 153 CYS A 160 1 8 HELIX 6 6 ARG A 161 SER A 163 5 3 HELIX 7 7 LYS A 172 GLY A 190 1 19 HELIX 8 8 ALA A 198 MET A 202 5 5 HELIX 9 9 TRP A 203 LYS A 213 1 11 HELIX 10 10 LYS A 243 PHE A 248 5 6 HELIX 11 11 PHE A 256 LYS A 268 1 13 HELIX 12 12 LYS A 273 TRP A 280 5 8 HELIX 13 13 GLY A 281 GLY A 285 5 5 HELIX 14 14 ASP A 300 GLY A 304 5 5 HELIX 15 15 THR A 314 TRP A 316 5 3 HELIX 16 16 ASP A 317 HIS A 331 1 15 HELIX 17 17 CYS A 384 ARG A 387 5 4 HELIX 18 18 TRP A 388 VAL A 401 1 14 HELIX 19 19 GLU A 493 LYS A 495 5 3
SHEET 1 A 9 SER A 12 LEU A 16 0 SHEET 2 A 9 GLY A 39 VAL A 42 1 O GLN A 41 N VAL A 14 SHEET 3 A 9 ARG A 92 ALA A 97 1 O TYR A 94 N VAL A 40 SHEET 4 A 9 GLY A 193 ILE A 196 1 O ARG A 195 N ALA A 97 SHEET 5 A 9 PHE A 229 GLN A 232 1 O PHE A 229 N PHE A 194 SHEET 6 A 9 ARG A 252 THR A 254 1 O ARG A 252 N GLN A 232 SHEET 7 A 9 ALA A 292 VAL A 294 1 O LEU A 293 N VAL A 253 SHEET 8 A 9 PHE A 335 SER A 340 1 O PHE A 335 N VAL A 294 SHEET 9 A 9 SER A 12 LEU A 16 1 N ILE A 13 O VAL A 338 SHEET 1 B 2 HIS A 101 GLY A 104 0 SHEET 2 B 2 LEU A 165 ASP A 167 -1 O LEU A 166 N CYS A 103 SHEET 1 C 2 PHE A 348 GLU A 349 0 SHEET 2 C 2 LYS A 352 ASP A 353 -1 O LYS A 352 N GLU A 349 SHEET 1 D 2 ASN A 362 ASP A 363 0 SHEET 2 D 2 VAL A 366 THR A 367 -1 O VAL A 366 N ASP A 363 SHEET 1 E 4 PHE A 406 ASP A 411 0 SHEET 2 E 4 GLN A 416 ARG A 421 -1 O GLY A 420 N THR A 407 SHEET 3 E 4 GLY A 425 ASN A 430 -1 O PHE A 429 N VAL A 417 SHEET 4 E 4 PHE A 487 HIS A 491 -1 O ILE A 490 N PHE A 426 SHEET 1 F 2 PHE A 436 GLN A 441 0 SHEET 2 F 2 LYS A 474 ILE A 479 -1 O ILE A 479 N PHE A 436 SHEET 1 G 2 GLY A 447 CYS A 450 0 SHEET 2 G 2 LYS A 466 VAL A 469 -1 O VAL A 469 N GLY A 447 SHEET 1 H 2 LYS A 457 ILE A 458 0 SHEET 2 H 2 ASN A 461 CYS A 462 -1 O ASN A 461 N ILE A 458
SSBOND 1 CYS A 28 CYS A 86 1555 1555 2.04 SSBOND 2 CYS A 70 CYS A 115 1555 1555 2.06 SSBOND 3 CYS A 141 CYS A 160 1555 1555 2.07 SSBOND 4 CYS A 378 CYS A 384 1555 1555 2.03 SSBOND 5 CYS A 450 CYS A 462 1555 1555 2.03
LINK C1 AGL A 502 O4 GLC A 503 1555 1555 1.35 LINK C1 GLC A 503 O4 HMC A 504 1555 1555 1.33 LINK C1 AGL A 505 O4 GLC A 506 1555 1555 1.34 LINK C1 AGL A 550 O4 GLC A 551 1555 1555 1.34 LINK C PCA A 1 N TYR A 2 1555 1555 1.34 LINK CA CA A 497 O HOH A 640 1555 1555 2.47 LINK CA CA A 497 O HOH A 725 1555 1555 2.60 LINK CA CA A 497 O HIS A 201 1555 1555 2.40 LINK CA CA A 497 O ARG A 158 1555 1555 2.40 LINK CA CA A 497 OD1 ASN A 100 1555 1555 2.43 LINK CA CA A 497 OD1 ASP A 167 1555 1555 2.41 LINK CA CA A 497 O HOH A 647 1555 1555 2.58 LINK CA CA A 497 OD2 ASP A 167 1555 1555 2.67 LINK C1 HMC A 501 N4 AGL A 502 1555 1555 1.27 LINK C1 HMC A 504 N4 AGL A 505 1555 1555 1.31 LINK C1 GLC A 551 O4 BGC A 552 1555 1555 1.45
CISPEP 1 ASN A 53 PRO A 54 0 -4.30 CISPEP 2 VAL A 129 PRO A 130 0 -1.10
SITE 1 AC1 4 ASN A 105 ASP A 147 SER A 163 AGL A 502 SITE 1 AC2 5 GLN A 63 SER A 163 HMC A 501 GLC A 503 SITE 2 AC2 5 HOH A 792 SITE 1 AC3 8 TRP A 58 TRP A 59 TYR A 62 GLN A 63 SITE 2 AC3 8 HIS A 305 AGL A 502 HMC A 504 AGL A 505 SITE 1 AC4 10 TRP A 58 TYR A 62 HIS A 101 ARG A 195 SITE 2 AC4 10 ASP A 197 GLU A 233 HIS A 299 ASP A 300 SITE 3 AC4 10 GLC A 503 AGL A 505 SITE 1 AC5 9 ALA A 198 HIS A 201 GLU A 233 ASP A 300 SITE 2 AC5 9 GLC A 503 HMC A 504 GLC A 506 HOH A 667 SITE 3 AC5 9 HOH A 688 SITE 1 AC6 6 TYR A 151 LYS A 200 ILE A 235 GLU A 240 SITE 2 AC6 6 GLY A 306 AGL A 505 SITE 1 AC7 3 LYS A 261 TRP A 284 GLC A 551 SITE 1 AC8 6 GLU A 272 TYR A 276 ASN A 279 GLY A 283 SITE 2 AC8 6 AGL A 550 BGC A 552 SITE 1 AC9 8 TYR A 276 ASP A 363 VAL A 366 LYS A 368 SITE 2 AC9 8 GLU A 369 GLC A 551 HOH A 790 HOH A 796 SITE 1 BC1 7 ASN A 100 ARG A 158 ASP A 167 HIS A 201 SITE 2 BC1 7 HOH A 640 HOH A 647 HOH A 725 SITE 1 BC2 3 ARG A 195 ASN A 298 ARG A 337
CRYST1 51.681 73.197 134.448 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019349 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013662 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007438 0.00000