10 20 30 40 50 60 70 80 1MFK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 12-AUG-02 1MFK
TITLE STRUCTURE OF PROKARYOTIC SECIS MRNA HAIRPIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 R(P*GP*GP*CP*GP*GP*UP*UP*GP*CP*AP*GP*GP*UP*CP*UP*GP*CP*AP*C COMPND 4 P*CP*GP*CP*C)-3'; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SECIS MRNA HAIRPIN
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE SEQUENCE IS FROM ESCHERICHIA COLI. T7 SOURCE 4 RNA POLYMERASE IN VITRO TRANSCRIPTION.
KEYWDS RNA TETRALOOP, (A/U)GNN TETRALOOP FAMILY, SELB
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.FOURMY,E.GUITTET,S.YOSHIZAWA
REVDAT 2 24-FEB-09 1MFK 1 VERSN REVDAT 1 13-NOV-02 1MFK 0
JRNL AUTH D.FOURMY,E.GUITTET,S.YOSHIZAWA JRNL TITL STRUCTURE OF PROKARYOTIC SECIS MRNA HAIRPIN AND JRNL TITL 2 ITS INTERACTION WITH ELONGATION FACTOR SELB JRNL REF J.MOL.BIOL. V. 324 137 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12421564 JRNL DOI 10.1016/S0022-2836(02)01030-6
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 260 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 72 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 1MFK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016874.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275; 278; 288; 293; 303 REMARK 210 PH : 6.4; 6.4; 6.4; 6.4; 6.4 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL; NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SECIS RNA NON-LABEL; 2MM REMARK 210 PHOSPHATE BUFFER, PH 6.4; 100% REMARK 210 D2O; 1MM SECIS RNA NON-LABEL; REMARK 210 2MM PHOSPHATE BUFFER, PH 6.4; REMARK 210 90% H2O, 10% D2O; 1MM SECIS REMARK 210 RNA U-15N, 13C; 2MM PHOSPHATE REMARK 210 BUFFER, PH 6.4; 100% D2O; 1MM REMARK 210 SECIS RNA U-15N, 13C; 2MM REMARK 210 PHOSPHATE BUFFER, PH 6.4; 90% REMARK 210 H2O, 10% D2O; 1MM SECIS RNA U- REMARK 210 15N; 2MM PHOSPHATE BUFFER, PH REMARK 210 6.4; 100% D2O; 1MM SECIS RNA U REMARK 210 -15N; 2MM PHOSPHATE BUFFER, PH REMARK 210 6.4; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DISCOVER, AURELIA, XWINNMR, REMARK 210 GIFA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 5 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 8 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 C A 9 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 1 U A 13 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 1 C A 19 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 1 C A 20 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 1 C A 22 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 G A 5 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 G A 12 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 U A 13 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 C A 22 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 3 G A 5 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 8 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 12 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 U A 13 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 C A 17 O4' - C1' - N1 ANGL. DEV. = 7.9 DEGREES REMARK 500 3 C A 19 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 3 C A 22 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 4 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 4 U A 6 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 4 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 U A 13 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 4 C A 17 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 C A 22 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 G A 5 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 U A 6 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 5 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 5 G A 12 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 5 U A 15 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 G A 16 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 5 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 C A 20 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 C A 22 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 6 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 U A 7 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 6 G A 8 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 6 C A 9 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 U A 13 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 6 C A 17 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 6 C A 19 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 172 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 U A 6 0.07 SIDE_CHAIN REMARK 500 1 A A 18 0.05 SIDE_CHAIN REMARK 500 1 G A 21 0.07 SIDE_CHAIN REMARK 500 2 G A 16 0.07 SIDE_CHAIN REMARK 500 3 G A 4 0.06 SIDE_CHAIN REMARK 500 3 U A 7 0.07 SIDE_CHAIN REMARK 500 3 C A 14 0.08 SIDE_CHAIN REMARK 500 3 G A 16 0.07 SIDE_CHAIN REMARK 500 3 C A 17 0.08 SIDE_CHAIN REMARK 500 4 G A 4 0.06 SIDE_CHAIN REMARK 500 4 G A 8 0.07 SIDE_CHAIN REMARK 500 4 G A 11 0.07 SIDE_CHAIN REMARK 500 4 G A 21 0.07 SIDE_CHAIN REMARK 500 5 G A 4 0.06 SIDE_CHAIN REMARK 500 6 U A 7 0.09 SIDE_CHAIN REMARK 500 6 G A 21 0.07 SIDE_CHAIN REMARK 500 7 G A 8 0.08 SIDE_CHAIN REMARK 500 7 A A 18 0.06 SIDE_CHAIN REMARK 500 8 G A 5 0.07 SIDE_CHAIN REMARK 500 8 G A 21 0.07 SIDE_CHAIN REMARK 500 9 G A 4 0.07 SIDE_CHAIN REMARK 500 9 C A 9 0.07 SIDE_CHAIN REMARK 500 9 C A 14 0.06 SIDE_CHAIN REMARK 500 9 G A 16 0.07 SIDE_CHAIN REMARK 500 9 A A 18 0.06 SIDE_CHAIN REMARK 500 10 G A 21 0.08 SIDE_CHAIN REMARK 500 11 G A 4 0.07 SIDE_CHAIN REMARK 500 11 U A 7 0.08 SIDE_CHAIN REMARK 500 11 G A 8 0.07 SIDE_CHAIN REMARK 500 11 G A 11 0.07 SIDE_CHAIN REMARK 500 11 U A 15 0.08 SIDE_CHAIN REMARK 500 11 G A 21 0.07 SIDE_CHAIN REMARK 500 12 G A 4 0.07 SIDE_CHAIN REMARK 500 12 C A 22 0.06 SIDE_CHAIN REMARK 500 13 G A 4 0.06 SIDE_CHAIN REMARK 500 13 C A 17 0.08 SIDE_CHAIN REMARK 500 14 G A 4 0.08 SIDE_CHAIN REMARK 500 14 G A 11 0.06 SIDE_CHAIN REMARK 500 14 U A 15 0.07 SIDE_CHAIN REMARK 500 14 G A 16 0.07 SIDE_CHAIN REMARK 500 14 G A 21 0.08 SIDE_CHAIN REMARK 500 15 G A 4 0.09 SIDE_CHAIN REMARK 500 15 U A 7 0.06 SIDE_CHAIN REMARK 500 15 G A 21 0.08 SIDE_CHAIN REMARK 500 16 C A 14 0.07 SIDE_CHAIN REMARK 500 16 G A 21 0.07 SIDE_CHAIN REMARK 500 18 G A 4 0.06 SIDE_CHAIN REMARK 500 18 G A 11 0.05 SIDE_CHAIN REMARK 500 18 U A 13 0.08 SIDE_CHAIN REMARK 500 19 G A 4 0.09 SIDE_CHAIN REMARK 500 19 G A 11 0.08 SIDE_CHAIN REMARK 500 19 G A 12 0.06 SIDE_CHAIN REMARK 500 19 G A 21 0.08 SIDE_CHAIN REMARK 500 20 G A 4 0.07 SIDE_CHAIN REMARK 500 20 G A 21 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1MFK A 1 23 PDB 1MFK 1MFK 1 23
SEQRES 1 A 23 G G C G G U U G C A G G U SEQRES 2 A 23 C U G C A C C G C C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000