1MFJ - Header Asymmetric Unit

HEADER RNA 11-AUG-02 1MFJ

TITLE 3' STEM-LOOP FROM HUMAN U4 SNRNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'- COMPND 3 R(*GP*AP*CP*AP*GP*UP*CP*UP*CP*UP*AP*CP*GP*GP*AP*GP*AP*CP*UP COMPND 4 *G)-3'; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: 3'STEM-LOOP OF HUMAN U4 SNRNA

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS PART OF HUMAN U4 SNRNA.

KEYWDS RIBONUCLEIC ACID, RNA OLIGONUCLEOTIDE, STEM-AND-LOOP, U4 KEYWDS 2 SMALL NUCLEAR RNA, UACG TETRALOOP

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR L.R.COMOLLI,N.B.ULYANOV,T.L.JAMES,W.H.GMEINER

REVDAT 2 24-FEB-09 1MFJ 1 VERSN REVDAT 1 06-NOV-02 1MFJ 0

JRNL AUTH L.R.COMOLLI,N.B.ULYANOV,A.M.SOTO,L.A.MARKY, JRNL AUTH 2 T.L.JAMES,W.H.GMEINER JRNL TITL NMR STRUCTURE OF THE 3' STEM-LOOP FROM HUMAN U4 JRNL TITL 2 SNRNA JRNL REF NUCLEIC ACIDS RES. V. 30 4371 2002 JRNL REFN ISSN 0305-1048 JRNL PMID 12384583 JRNL DOI 10.1093/NAR/GKF560

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, MINICARLO N/A REMARK 3 AUTHORS : GUENTERT (DYANA), ULYANOV ET AL. (MINICARLO) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON 200 DISTANCE REMARK 3 RESTRAINTS, OF WHICH 140 ARE QUANTITATIVE BOUNDS FOR REMARK 3 NONEXCHANGEABLE PROTONS CALCULATED WITH MARDIGRAS, 56 ARE REMARK 3 UPPER BOUNDS FOR EXCHANGEABLE PROTONS, AND 4 ARE HYDROGEN BOND REMARK 3 RESTRAINTS.

REMARK 4 REMARK 4 1MFJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016873.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 293 REMARK 210 PH : 6.4; 6.4 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE & 50 REMARK 210 MM NACL; 10 MM SODIUM REMARK 210 PHOSPHATE & 50 MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM RNA; 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER; 50 MM SODIUM REMARK 210 CHLORIDE; 1 MM RNA; 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER; 50 MM REMARK 210 SODIUM CHLORIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D TOCSY, REMARK 210 NATURAL ABUNDANCE 13C-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, NMRPIPE 2.1, SPARKY REMARK 210 3.0, MARDIGRAS 3.2 REMARK 210 METHOD USED : COMPLETE RELAXATION MATRIX; REMARK 210 RANDOM ERROR ANALYSIS OF NOE; REMARK 210 TORSION ANGLE DYNAMICS; REMARK 210 SIMULATED ANNEALING USING REMARK 210 METROPOLIS MONTE CARLO; REMARK 210 RESTRAINED MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 15 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TOTAL ENERGY (A REMARK 210 WEIGHTED SUM OF CONFORMATIONAL REMARK 210 ENERGY AND RESTRAINT ENERGY). REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND COMPLETE RELAXATION MATRIX ANALYSIS REMARK 210 OF NOE INTENSITIES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 A A 15 C3' - C2' - C1' ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL

DBREF 1MFJ A 1 20 PDB 1MFJ 1MFJ 1 20

SEQRES 1 A 20 G A C A G U C U C U A C G SEQRES 2 A 20 G A G A C U G

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000