10 20 30 40 50 60 70 80 1MDZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 07-AUG-02 1MDZ
TITLE CRYSTAL STRUCTURE OF ARNB AMINOTRANSFERASE WITH CYCLOSERINE AND TITLE 2 PYRIDOXAL 5' PHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARNB AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE DEGT/DNRJ/ERYC1/STRS FAMILY; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TYPE 1 AMINOTRANSFERASE FOLD, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR B.W.NOLAND,J.M.NEWMAN,J.HENDLE,J.BADGER,J.A.CHRISTOPHER,J.TRESSER, AUTHOR 2 M.D.BUCHANAN,T.WRIGHT,M.E.RUTTER,W.E.SANDERSON,H.-J.MULLER- AUTHOR 3 DIECKMANN,K.S.GAJIWALA,S.G.BUCHANAN
REVDAT 5 13-JUL-11 1MDZ 1 VERSN REVDAT 4 24-FEB-09 1MDZ 1 VERSN REVDAT 3 27-JUN-06 1MDZ 1 TITLE REVDAT 2 30-AUG-05 1MDZ 1 REMARK REVDAT 1 11-DEC-02 1MDZ 0
JRNL AUTH B.W.NOLAND,J.M.NEWMAN,J.HENDLE,J.BADGER,J.A.CHRISTOPHER, JRNL AUTH 2 J.TRESSER,M.D.BUCHANAN,T.WRIGHT,M.E.RUTTER,W.E.SANDERSON, JRNL AUTH 3 H.-J.MULLER-DIECKMANN,K.GAJIWALA,S.G.BUCHANAN JRNL TITL STRUCTURAL STUDIES OF SALMONELLA TYPHIMURIUM ARNB (PMRH) JRNL TITL 2 AMINOTRANSFERASE: A 4-AMINO-4-DEOXY-L-ARABINOSE JRNL TITL 3 LIPOPOLYSACCHARIDE MODIFYING ENZYME JRNL REF STRUCTURE V. 10 1569 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12429098 JRNL DOI 10.1016/S0969-2126(02)00879-1
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BADGER,J.M.SAUDER,J.M.ADAMS,S.ANTONYSAMY,K.BAIN, REMARK 1 AUTH 2 M.G.BERGSEID,S.G.BUCHANAN,M.D.BUCHANAN,Y.BATIYENKO, REMARK 1 AUTH 3 J.A.CHRISTOPHER,S.EMTAGE,A.EROSHKINA,I.FEIL,E.B.FURLONG, REMARK 1 AUTH 4 K.S.GAJIWALA,X.GAO,D.HE,J.HENDLE,A.HUBER,K.HODA,P.KEARINS, REMARK 1 AUTH 5 C.KISSINGER,B.LAUBERT,H.A.LEWIS,J.LIN,K.LOOMIS,D.LORIMER, REMARK 1 AUTH 6 G.LOUIE,M.MALETIC,C.D.MARSH,I.MILLER,J.MOLINARI, REMARK 1 AUTH 7 H.J.MULLER-DIECKMANN,J.M.NEWMAN,B.W.NOLAND,B.PAGARIGAN, REMARK 1 AUTH 8 F.PARK,T.S.PEAT,K.W.POST,S.RADOJICIC,A.RAMOS,R.ROMERO, REMARK 1 AUTH 9 M.E.RUTTER,W.E.SANDERSON,K.D.SCHWINN,J.TRESSER,J.WINHOVEN, REMARK 1 AUTH10 T.A.WRIGHT,L.WU,J.XU,T.J.R.HARRIS REMARK 1 TITL STRUCTURAL ANALYSIS OF A SET OF PROTEINS RESULTING FROM A REMARK 1 TITL 2 BACTERIAL GENOMICS PROJECT REMARK 1 REF PROTEINS V. 60 787 2005 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 16021622 REMARK 1 DOI 10.1002/PROT.20541
REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1561 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1MDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016841.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33311 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 38.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG 10000, BETA- REMARK 280 MERCAPTOETHANOL, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.85500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.45200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.78250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.45200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.92750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.45200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.45200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.78250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.45200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.45200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.92750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.85500 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 MET A 6 REMARK 465 MET A 7 REMARK 465 SER A 8 REMARK 465 ALA A 221 REMARK 465 TRP A 222 REMARK 465 ASP A 223 REMARK 465 ARG A 224 REMARK 465 GLN A 225 REMARK 465 SER A 226 REMARK 465 GLY A 227 REMARK 465 GLY A 228 REMARK 465 ARG A 229 REMARK 465 ALA A 230 REMARK 465 PRO A 231 REMARK 465 GLY A 384 REMARK 465 GLN A 385 REMARK 465 GLY A 386 REMARK 465 SER A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CB CG OD1 OD2 REMARK 470 ARG A 15 NE CZ NH1 NH2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 ARG A 172 CD NE CZ NH1 NH2 REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 204 CD OE1 NE2 REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 ARG A 265 CD NE CZ NH1 NH2 REMARK 470 HIS A 274 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 275 CG CD OE1 NE2 REMARK 470 ASP A 279 CB CG OD1 OD2 REMARK 470 GLN A 283 CG CD OE1 NE2 REMARK 470 GLU A 291 OE1 OE2 REMARK 470 ARG A 307 CZ NH1 NH2 REMARK 470 LYS A 320 CE NZ REMARK 470 THR A 321 OG1 CG2 REMARK 470 LYS A 322 CD CE NZ REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 GLN A 381 CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -169.19 -101.55 REMARK 500 ALA A 193 -55.73 80.69 REMARK 500 ALA A 332 136.79 -37.31 REMARK 500 LYS A 337 -71.86 -31.17 REMARK 500 PHE A 372 -72.88 -47.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 589 DISTANCE = 5.09 ANGSTROMS
REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE USE OF ALTERNATE CONFORMATION ID IN REMARK 600 DCS AND PLP IN THIS ENTRY IS NOT TO REMARK 600 INDICATE THAT THE ATOMS SPECIFIED HAVE MORE REMARK 600 THAN ONE IDENTIFIABLE SITE. THERE IS ONLY REMARK 600 ONE SITE FOR EACH ATOM IN DCS AND PLP, REMARK 600 ALTHOUGH THE SITES HAVE PARTIAL OCCUPANCIES REMARK 600 BECAUSE THE TWO LIGANDS ARE COMPETING FOR REMARK 600 THE SAME SPACE.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCS A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MDO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARNB TRANSFERASE WITH PYRIDOXAL 5' REMARK 900 PHOSPHATE REMARK 900 RELATED ID: 1MDX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARNB TRANSFERASE WITH PYRIDOXAL 5' REMARK 900 PHOSPHATE
DBREF 1MDZ A 1 385 UNP Q8ZNF3 ARNB_SALTY 1 385
SEQADV 1MDZ GLY A 386 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ SER A 387 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ HIS A 388 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ HIS A 389 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ HIS A 390 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ HIS A 391 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ HIS A 392 UNP Q8ZNF3 EXPRESSION TAG SEQADV 1MDZ HIS A 393 UNP Q8ZNF3 EXPRESSION TAG
SEQRES 1 A 393 MET ALA GLU GLY LYS MET MET SER ASP PHE LEU PRO PHE SEQRES 2 A 393 SER ARG PRO ALA MET GLY ALA GLU GLU LEU ALA ALA VAL SEQRES 3 A 393 LYS THR VAL LEU ASP SER GLY TRP ILE THR THR GLY PRO SEQRES 4 A 393 LYS ASN GLN GLU LEU GLU ALA ALA PHE CYS ARG LEU THR SEQRES 5 A 393 GLY ASN GLN TYR ALA VAL ALA VAL SER SER ALA THR ALA SEQRES 6 A 393 GLY MET HIS ILE ALA LEU MET ALA LEU GLY ILE GLY GLU SEQRES 7 A 393 GLY ASP GLU VAL ILE THR PRO SER MET THR TRP VAL SER SEQRES 8 A 393 THR LEU ASN MET ILE VAL LEU LEU GLY ALA ASN PRO VAL SEQRES 9 A 393 MET VAL ASP VAL ASP ARG ASP THR LEU MET VAL THR PRO SEQRES 10 A 393 GLU HIS ILE GLU ALA ALA ILE THR PRO GLN THR LYS ALA SEQRES 11 A 393 ILE ILE PRO VAL HIS TYR ALA GLY ALA PRO ALA ASP LEU SEQRES 12 A 393 ASP ALA ILE TYR ALA LEU GLY GLU ARG TYR GLY ILE PRO SEQRES 13 A 393 VAL ILE GLU ASP ALA ALA HIS ALA THR GLY THR SER TYR SEQRES 14 A 393 LYS GLY ARG HIS ILE GLY ALA ARG GLY THR ALA ILE PHE SEQRES 15 A 393 SER PHE HIS ALA ILE LYS ASN ILE THR CYS ALA GLU GLY SEQRES 16 A 393 GLY ILE VAL VAL THR ASP ASN PRO GLN PHE ALA ASP LYS SEQRES 17 A 393 LEU ARG SER LEU LYS PHE HIS GLY LEU GLY VAL ASP ALA SEQRES 18 A 393 TRP ASP ARG GLN SER GLY GLY ARG ALA PRO GLN ALA GLU SEQRES 19 A 393 VAL LEU ALA PRO GLY TYR LYS TYR ASN LEU PRO ASP LEU SEQRES 20 A 393 ASN ALA ALA ILE ALA LEU ALA GLN LEU GLN LYS LEU ASP SEQRES 21 A 393 ALA LEU ASN ALA ARG ARG ALA ALA ILE ALA ALA GLN TYR SEQRES 22 A 393 HIS GLN ALA MET ALA ASP LEU PRO PHE GLN PRO LEU SER SEQRES 23 A 393 LEU PRO SER TRP GLU HIS ILE HIS ALA TRP HIS LEU PHE SEQRES 24 A 393 ILE ILE ARG VAL ASP GLU ALA ARG CYS GLY ILE THR ARG SEQRES 25 A 393 ASP ALA LEU MET ALA SER LEU LYS THR LYS GLY ILE GLY SEQRES 26 A 393 THR GLY LEU HIS PHE ARG ALA ALA HIS THR GLN LYS TYR SEQRES 27 A 393 TYR ARG GLU ARG PHE PRO THR LEU THR LEU PRO ASP THR SEQRES 28 A 393 GLU TRP ASN SER GLU ARG ILE CYS SER LEU PRO LEU PHE SEQRES 29 A 393 PRO ASP MET THR GLU SER ASP PHE ASP ARG VAL ILE THR SEQRES 30 A 393 ALA LEU HIS GLN ILE ALA GLY GLN GLY SER HIS HIS HIS SEQRES 31 A 393 HIS HIS HIS
HET DCS A 400 22 HET PLP A 401 15
HETNAM DCS D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 DCS YLMETHYL]-N,O-CYCLOSERYLAMIDE HETNAM PLP PYRIDOXAL-5'-PHOSPHATE
HETSYN DCS D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE
FORMUL 2 DCS C11 H16 N3 O7 P FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 HOH *254(H2 O)
HELIX 1 1 GLY A 19 GLY A 33 1 15 HELIX 2 2 GLY A 38 GLY A 53 1 16 HELIX 3 3 SER A 62 LEU A 74 1 13 HELIX 4 4 TRP A 89 LEU A 99 1 11 HELIX 5 5 THR A 116 ILE A 124 1 9 HELIX 6 6 HIS A 135 ALA A 139 5 5 HELIX 7 7 ASP A 142 GLY A 154 1 13 HELIX 8 8 ASN A 202 LYS A 213 1 12 HELIX 9 9 PRO A 245 LYS A 258 1 14 HELIX 10 10 LYS A 258 ASP A 279 1 22 HELIX 11 11 ASP A 304 GLY A 309 1 6 HELIX 12 12 THR A 311 LYS A 322 1 12 HELIX 13 13 ALA A 332 THR A 335 5 4 HELIX 14 14 GLN A 336 PHE A 343 1 8 HELIX 15 15 LEU A 348 ARG A 357 1 10 HELIX 16 16 THR A 368 ALA A 383 1 16
SHEET 1 A 4 TYR A 56 VAL A 60 0 SHEET 2 A 4 GLY A 196 THR A 200 -1 O VAL A 198 N VAL A 58 SHEET 3 A 4 THR A 179 SER A 183 -1 N ALA A 180 O VAL A 199 SHEET 4 A 4 ILE A 158 ASP A 160 1 N GLU A 159 O THR A 179 SHEET 1 B 3 ASN A 102 VAL A 106 0 SHEET 2 B 3 GLU A 81 PRO A 85 1 N VAL A 82 O VAL A 104 SHEET 3 B 3 THR A 128 ILE A 131 1 O LYS A 129 N GLU A 81 SHEET 1 C 3 ARG A 172 HIS A 173 0 SHEET 2 C 3 SER A 168 TYR A 169 -1 N TYR A 169 O ARG A 172 SHEET 3 C 3 HIS A 292 ILE A 293 -1 O ILE A 293 N SER A 168 SHEET 1 D 2 LEU A 217 GLY A 218 0 SHEET 2 D 2 GLU A 234 VAL A 235 -1 O GLU A 234 N GLY A 218 SHEET 1 E 3 GLN A 283 PRO A 284 0 SHEET 2 E 3 PHE A 299 ARG A 302 -1 O ARG A 302 N GLN A 283 SHEET 3 E 3 ILE A 358 LEU A 361 -1 O CYS A 359 N ILE A 301
LINK NZ ALYS A 188 C4AAPLP A 401 1555 1555 1.47
CISPEP 1 HIS A 329 PHE A 330 0 -0.90
SITE 1 AC1 19 SER A 62 ALA A 63 THR A 64 TRP A 89 SITE 2 AC1 19 SER A 91 ASP A 160 ALA A 162 HIS A 163 SITE 3 AC1 19 SER A 183 HIS A 185 ILE A 187 LYS A 188 SITE 4 AC1 19 LYS A 241 HIS A 329 PHE A 330 PLP A 401 SITE 5 AC1 19 HOH A 402 HOH A 422 HOH A 486 SITE 1 AC2 14 SER A 62 ALA A 63 THR A 64 THR A 88 SITE 2 AC2 14 SER A 91 ASP A 160 HIS A 163 SER A 183 SITE 3 AC2 14 LYS A 188 LYS A 241 PHE A 330 DCS A 400 SITE 4 AC2 14 HOH A 402 HOH A 422
CRYST1 90.904 90.904 127.710 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011001 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011001 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007830 0.00000