1MD5 - Header Asymmetric Unit

HEADER ISOMERASE 07-AUG-02 1MD5

TITLE THEORETICAL MODEL OF CYPH_LUPLU

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.2.1.8

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUPINUS LUTEUS; SOURCE 3 ORGANISM_COMMON: YELLOW LUPINE

KEYWDS CYCLOSPORIN, ISOMERASE, ROTAMASE, MULTIGENE FAMILY

EXPDTA THEORETICAL MODEL

AUTHOR K.SIDDHARHTA

REVDAT 1 21-AUG-02 1MD5 0

JRNL AUTH K.SIDDHARHTA JRNL TITL THEORETICAL MODEL OF CYPH_LUPLU JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1MD5 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-2002. REMARK 100 THE RCSB ID CODE IS RCSB016828.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: SEQUENCE IS TAKEN FROM SWISSPROT AND BLASTED AGAINST REMARK 220 PDB. ONE REFERENCE PROTEIN IS TAKEN WITH 71% IDENTITY REMARK 220 WITH RESOLUTION 1.8 A. BOTH THE QUREY AND REFERENCE REMARK 220 SEQUENCE IS MULTIPLE ALLIENED IN CLUSTALW. THIS TWO REMARK 220 SEQUENCE ARE THEN LOADED IN INSIGHTII. BOTH THE SEQUENCE REMARK 220 ARE ALLIENED MANULLAY REFERENCE TO CLUSTALW.THEN REMARK 220 SEQUENCE IS SUBMITED TO MODELER. WHICH DOES AUTOMATIC REMARK 220 REFINEMENT USING CONJUGATE_GRADIENT AND MOLECULAR REMARK 220 DYNAMIC SIMULATION

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 82 161.57 103.67 REMARK 500 ALA A 88 -100.49 168.94

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DYW RELATED DB: PDB REMARK 900 1DYW CONTAINS A DIVERGENT LOOP CYCLOPHILIN

DBREF 1MD5 A 1 172 UNP O49886 CYPH_LUPLU 1 172

SEQRES 1 A 172 MET SER ASN PRO LYS VAL PHE PHE ASP MET ALA ILE ALA SEQRES 2 A 172 GLY ASN PRO ALA GLY ARG ILE VAL MET GLU LEU TYR ALA SEQRES 3 A 172 ASP THR THR PRO ARG THR ALA GLU ASN PHE ARG ALA LEU SEQRES 4 A 172 CYS THR GLY GLU LYS GLY VAL GLY ARG SER GLY LYS PRO SEQRES 5 A 172 LEU HIS TYR LYS GLY SER THR PHE HIS ARG VAL ILE PRO SEQRES 6 A 172 ASN PHE MET CYS GLN GLY GLY ASP PHE THR ALA GLY ASN SEQRES 7 A 172 GLY THR GLY ALA GLU SER ILE TYR GLY ALA LYS PHE ALA SEQRES 8 A 172 ASP GLU ASN PHE ILE LYS ARG HIS THR GLY PRO GLY ILE SEQRES 9 A 172 LEU SER MET ALA ASN ALA GLY ALA GLY THR ASN GLY SER SEQRES 10 A 172 GLN PHE PHE ILE CYS THR GLU LYS THR GLU TRP LEU ASP SEQRES 11 A 172 GLY LYS HIS VAL VAL PHE GLY LYS VAL ILE GLU GLY MET SEQRES 12 A 172 ASN VAL VAL ARG ASP ILE GLU LYS VAL GLY SER GLY SER SEQRES 13 A 172 GLY LYS THR SER ARG PRO VAL THR ILE ALA ASP CYS GLY SEQRES 14 A 172 GLN LEU SER

HELIX 1 1 THR A 29 GLY A 42 1 14 HELIX 2 2 THR A 126 ASP A 130 5 5 HELIX 3 3 GLY A 142 VAL A 152 1 11

SHEET 1 A 8 ARG A 62 ILE A 64 0 SHEET 2 A 8 MET A 68 GLY A 71 -1 O GLN A 70 N ARG A 62 SHEET 3 A 8 PHE A 119 CYS A 122 -1 O ILE A 121 N CYS A 69 SHEET 4 A 8 ILE A 104 MET A 107 -1 N SER A 106 O PHE A 120 SHEET 5 A 8 VAL A 135 GLU A 141 -1 O GLY A 137 N LEU A 105 SHEET 6 A 8 ASN A 15 LEU A 24 -1 N GLU A 23 O LYS A 138 SHEET 7 A 8 LYS A 5 ILE A 12 -1 N VAL A 6 O MET A 22 SHEET 8 A 8 VAL A 163 GLN A 170 -1 O ASP A 167 N ASP A 9

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000