1M9W - Header Asymmetric Unit

HEADER ELECTRON TRANSPORT 30-JUL-02 1M9W

TITLE STUDY OF ELECTROSTATIC POTENTIAL SURFACE DISTRIBUTION USING TITLE 2 HIGH RESOLUTION SIDE-CHAIN CONFORMATION DETERMINED BY NMR

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTOCYANIN; COMPND 3 CHAIN: A

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1143

KEYWDS SIDECHAIN ORIENTATION, CONGEN, ELECTRON TRANSPORT

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR D.MONLEON,B.CELDA

REVDAT 3 24-FEB-09 1M9W 1 VERSN REVDAT 2 25-SEP-02 1M9W 1 AUTHOR REVDAT 1 14-AUG-02 1M9W 0

JRNL AUTH D.MONLEON,B.CELDA JRNL TITL STUDY OF ELECTROSTATIC POTENTIAL SURFACE JRNL TITL 2 DISTRIBUTION OF WILD-TYPE PLASTOCYANIN JRNL TITL 3 SYNECHOCYSTIS SOLUTION STRUCTURE DETERMINED BY JRNL TITL 4 HOMONUCLEAR NMR. JRNL REF BIOPOLYMERS V. 70 212 2003 JRNL REFN ISSN 0006-3525 JRNL PMID 14517909 JRNL DOI 10.1002/BIP.10472

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CONGEN 2.1.2178 REMARK 3 AUTHORS : BRUCCOLERI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1M9W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016778.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 303 REMARK 210 PH : 5.4; 5.4 REMARK 210 IONIC STRENGTH : 1; 1 REMARK 210 PRESSURE : 1ATM; 1ATM REMARK 210 SAMPLE CONTENTS : PLASTOCYANIN 4MM, 0.5MM REMARK 210 TRICINE-KOH, 5% D2O, SODIUM REMARK 210 DITHIONITE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY, DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 3.9 REMARK 210 METHOD USED : CONGEN SIMULATED ANNEALING REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 1 TYR A 79 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 HIS A 58 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 2 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 2 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 2 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 2 TYR A 79 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 3 VAL A 5 CA - CB - CG1 ANGL. DEV. = 9.1 DEGREES REMARK 500 3 PRO A 18 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 3 GLU A 28 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 3 HIS A 39 CB - CG - ND1 ANGL. DEV. = -8.4 DEGREES REMARK 500 3 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 3 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 3 TYR A 79 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 3 TYR A 79 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 4 ALA A 62 CB - CA - C ANGL. DEV. = 11.3 DEGREES REMARK 500 4 PHE A 69 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 4 PHE A 69 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 PHE A 73 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 TYR A 79 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 5 HIS A 39 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 5 HIS A 58 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 5 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 5 PHE A 73 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 5 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 5 GLU A 98 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 6 PHE A 73 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 6 TYR A 79 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 6 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 6 VAL A 97 CA - CB - CG2 ANGL. DEV. = 9.5 DEGREES REMARK 500 7 HIS A 39 CB - CG - CD2 ANGL. DEV. = -10.1 DEGREES REMARK 500 7 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 7 TYR A 79 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 7 TYR A 81 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 8 TRP A 31 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 8 HIS A 39 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 8 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 8 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.2 DEGREES REMARK 500 8 TYR A 79 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 8 TYR A 79 CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 9 HIS A 39 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 9 ASN A 40 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 9 PHE A 69 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 9 PHE A 73 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 9 PHE A 73 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 9 TYR A 79 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 9 TYR A 79 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 10 HIS A 58 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 96.47 13.51 REMARK 500 1 LEU A 14 65.28 -68.23 REMARK 500 1 ALA A 25 99.67 -11.59 REMARK 500 1 LYS A 30 52.51 -104.77 REMARK 500 1 LEU A 36 51.33 38.22 REMARK 500 1 SER A 37 151.39 -48.86 REMARK 500 1 ALA A 45 39.75 72.67 REMARK 500 1 THR A 52 1.49 -63.40 REMARK 500 1 SER A 57 154.40 150.74 REMARK 500 1 HIS A 58 15.05 -69.77 REMARK 500 1 LYS A 59 -18.04 -145.03 REMARK 500 2 ASN A 2 77.85 50.40 REMARK 500 2 LEU A 14 64.17 -67.42 REMARK 500 2 ALA A 25 84.20 -61.66 REMARK 500 2 LEU A 36 -66.32 74.22 REMARK 500 2 SER A 37 147.88 66.22 REMARK 500 2 ALA A 45 70.82 63.67 REMARK 500 2 SER A 57 99.12 66.32 REMARK 500 2 HIS A 58 5.32 24.82 REMARK 500 2 LYS A 59 -12.40 -154.72 REMARK 500 2 THR A 72 89.11 -151.38 REMARK 500 3 ASN A 2 91.85 4.16 REMARK 500 3 LEU A 14 70.28 -66.19 REMARK 500 3 ALA A 45 70.11 79.93 REMARK 500 3 SER A 68 172.08 70.27 REMARK 500 4 ASN A 2 78.24 34.47 REMARK 500 4 ALA A 25 87.50 -7.83 REMARK 500 4 GLU A 27 -172.33 -64.19 REMARK 500 4 ASN A 34 -30.95 -147.19 REMARK 500 4 LEU A 36 52.79 37.79 REMARK 500 4 SER A 57 49.44 -1.11 REMARK 500 4 HIS A 58 1.84 50.33 REMARK 500 4 LYS A 59 -11.11 -152.78 REMARK 500 4 THR A 74 52.16 -151.16 REMARK 500 5 ASN A 2 86.92 26.66 REMARK 500 5 LEU A 14 69.70 -69.54 REMARK 500 5 THR A 20 -75.99 -135.04 REMARK 500 5 VAL A 21 160.29 73.29 REMARK 500 5 ALA A 25 100.18 -54.91 REMARK 500 5 LEU A 36 53.33 85.48 REMARK 500 5 ALA A 44 -2.87 -59.15 REMARK 500 5 SER A 57 42.76 -58.11 REMARK 500 5 HIS A 58 -37.01 41.57 REMARK 500 5 THR A 74 44.38 -152.31 REMARK 500 5 PRO A 76 105.35 -51.32 REMARK 500 5 LYS A 94 -62.98 -121.02 REMARK 500 5 VAL A 95 127.94 75.56 REMARK 500 6 ASN A 2 99.03 20.65 REMARK 500 6 LEU A 14 62.90 -67.26 REMARK 500 6 ALA A 25 103.20 -31.16 REMARK 500 6 ASN A 34 -30.17 -132.80 REMARK 500 6 ALA A 45 33.03 73.24 REMARK 500 6 SER A 57 86.11 -21.00 REMARK 500 6 HIS A 58 12.21 34.38 REMARK 500 6 LYS A 59 -13.78 -156.38 REMARK 500 6 SER A 68 171.38 64.03 REMARK 500 7 ASN A 2 72.86 48.41 REMARK 500 7 ALA A 25 100.77 -44.91 REMARK 500 7 ALA A 45 68.51 69.40 REMARK 500 7 SER A 57 150.64 153.06 REMARK 500 7 GLU A 67 87.04 -68.92 REMARK 500 7 THR A 70 138.36 47.49 REMARK 500 8 ASN A 2 89.76 18.93 REMARK 500 8 LEU A 14 63.41 -68.14 REMARK 500 8 ALA A 25 115.28 -24.34 REMARK 500 8 THR A 52 -9.00 -56.95 REMARK 500 8 LEU A 56 -72.51 -71.17 REMARK 500 8 SER A 57 149.52 158.15 REMARK 500 9 ASN A 2 78.09 31.06 REMARK 500 9 LEU A 14 67.02 -67.97 REMARK 500 9 ALA A 25 65.40 -69.06 REMARK 500 9 ALA A 50 59.70 -110.00 REMARK 500 9 SER A 57 43.80 -71.82 REMARK 500 9 HIS A 58 -56.17 44.92 REMARK 500 9 ALA A 64 -130.07 -96.31 REMARK 500 9 THR A 78 94.85 53.79 REMARK 500 9 VAL A 97 53.65 -113.94 REMARK 500 10 ASN A 2 73.15 42.41 REMARK 500 10 LEU A 14 66.88 -64.69 REMARK 500 10 SER A 19 -15.98 93.12 REMARK 500 10 ALA A 45 -23.33 87.92 REMARK 500 10 ASP A 46 -6.30 48.11 REMARK 500 10 SER A 57 30.43 -66.50 REMARK 500 10 HIS A 58 -47.90 51.45 REMARK 500 10 THR A 74 23.45 -140.12 REMARK 500 10 PRO A 76 108.90 -50.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 HIS A 39 0.16 SIDE_CHAIN REMARK 500 1 TYR A 79 0.19 SIDE_CHAIN REMARK 500 1 TYR A 81 0.07 SIDE_CHAIN REMARK 500 1 ARG A 87 0.17 SIDE_CHAIN REMARK 500 2 HIS A 39 0.18 SIDE_CHAIN REMARK 500 2 TYR A 79 0.12 SIDE_CHAIN REMARK 500 3 HIS A 39 0.08 SIDE_CHAIN REMARK 500 3 TYR A 79 0.17 SIDE_CHAIN REMARK 500 3 TYR A 81 0.10 SIDE_CHAIN REMARK 500 4 HIS A 39 0.11 SIDE_CHAIN REMARK 500 4 HIS A 58 0.10 SIDE_CHAIN REMARK 500 4 PHE A 69 0.07 SIDE_CHAIN REMARK 500 4 TYR A 79 0.18 SIDE_CHAIN REMARK 500 4 ARG A 87 0.12 SIDE_CHAIN REMARK 500 5 HIS A 39 0.08 SIDE_CHAIN REMARK 500 5 TYR A 79 0.19 SIDE_CHAIN REMARK 500 5 TYR A 81 0.10 SIDE_CHAIN REMARK 500 6 HIS A 39 0.16 SIDE_CHAIN REMARK 500 6 TYR A 79 0.22 SIDE_CHAIN REMARK 500 6 TYR A 81 0.07 SIDE_CHAIN REMARK 500 7 HIS A 39 0.17 SIDE_CHAIN REMARK 500 7 TYR A 81 0.10 SIDE_CHAIN REMARK 500 8 HIS A 39 0.15 SIDE_CHAIN REMARK 500 8 TYR A 79 0.09 SIDE_CHAIN REMARK 500 9 HIS A 39 0.20 SIDE_CHAIN REMARK 500 9 TYR A 79 0.14 SIDE_CHAIN REMARK 500 9 TYR A 81 0.12 SIDE_CHAIN REMARK 500 10 HIS A 39 0.16 SIDE_CHAIN REMARK 500 10 TYR A 79 0.27 SIDE_CHAIN REMARK 500 10 TYR A 81 0.08 SIDE_CHAIN REMARK 500 10 ARG A 87 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

DBREF 1M9W A 1 98 UNP P21697 PLAS_SYNY3 29 126

SEQRES 1 A 98 ALA ASN ALA THR VAL LYS MET GLY SER ASP SER GLY ALA SEQRES 2 A 98 LEU VAL PHE GLU PRO SER THR VAL THR ILE LYS ALA GLY SEQRES 3 A 98 GLU GLU VAL LYS TRP VAL ASN ASN LYS LEU SER PRO HIS SEQRES 4 A 98 ASN ILE VAL PHE ALA ALA ASP GLY VAL ASP ALA ASP THR SEQRES 5 A 98 ALA ALA LYS LEU SER HIS LYS GLY LEU ALA PHE ALA ALA SEQRES 6 A 98 GLY GLU SER PHE THR SER THR PHE THR GLU PRO GLY THR SEQRES 7 A 98 TYR THR TYR TYR CYS GLU PRO HIS ARG GLY ALA GLY MET SEQRES 8 A 98 VAL GLY LYS VAL VAL VAL GLU

HELIX 1 1 ALA A 50 ALA A 54 5 5 HELIX 2 2 GLU A 84 GLY A 90 5 7

SHEET 1 A 3 PHE A 16 GLU A 17 0 SHEET 2 A 3 LYS A 6 MET A 7 -1 N LYS A 6 O GLU A 17 SHEET 3 A 3 VAL A 32 ASN A 33 1 O VAL A 32 N MET A 7 SHEET 1 B 4 THR A 20 ILE A 23 0 SHEET 2 B 4 VAL A 92 VAL A 97 1 O VAL A 96 N ILE A 23 SHEET 3 B 4 THR A 78 TYR A 82 -1 N TYR A 79 O VAL A 95 SHEET 4 B 4 VAL A 42 PHE A 43 -1 N VAL A 42 O TYR A 82 SHEET 1 C 2 GLU A 28 VAL A 29 0 SHEET 2 C 2 SER A 71 THR A 72 -1 O SER A 71 N VAL A 29

CISPEP 1 GLU A 17 PRO A 18 1 -2.14 CISPEP 2 SER A 37 PRO A 38 1 -2.02 CISPEP 3 GLU A 17 PRO A 18 2 -2.09 CISPEP 4 SER A 37 PRO A 38 2 -2.22 CISPEP 5 GLU A 17 PRO A 18 3 -2.10 CISPEP 6 SER A 37 PRO A 38 3 -1.97 CISPEP 7 GLU A 17 PRO A 18 4 -2.10 CISPEP 8 SER A 37 PRO A 38 4 -2.04 CISPEP 9 GLU A 17 PRO A 18 5 -2.29 CISPEP 10 SER A 37 PRO A 38 5 0.69 CISPEP 11 GLU A 17 PRO A 18 6 -2.04 CISPEP 12 SER A 37 PRO A 38 6 0.44 CISPEP 13 GLU A 17 PRO A 18 7 -2.08 CISPEP 14 SER A 37 PRO A 38 7 -2.21 CISPEP 15 GLU A 17 PRO A 18 8 -2.07 CISPEP 16 SER A 37 PRO A 38 8 2.04 CISPEP 17 GLU A 17 PRO A 18 9 -2.18 CISPEP 18 SER A 37 PRO A 38 9 -1.92 CISPEP 19 GLU A 17 PRO A 18 10 2.76 CISPEP 20 SER A 37 PRO A 38 10 -2.14

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000