1M97 - Header Asymmetric Unit

HEADER DNA-BINDING PROTEIN/DNA 27-JUL-02 1M97

TITLE CONSERVATION OF STRUCTURE AND FUNCTION AMONG TYROSINE TITLE 2 RECOMBINASES: HOMOLOGY-BASED MODELING OF THE LAMBDA TITLE 3 INTEGRASE CORE-BINDING DOMAIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE-BINDING DOMAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(P*GP*CP*TP*AP*TP*AP*CP*GP*A)-3'; COMPND 7 CHAIN: B; COMPND 8 OTHER_DETAILS: LOXP DNA; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 5'-D(P*TP*CP*GP*TP*AP*TP*AP*GP*C)-3'; COMPND 11 CHAIN: C; COMPND 12 OTHER_DETAILS: LOXP DNA

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIOPHAGE LAMBDA; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: BACTERIOPHAGE P1; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BACTERIOPHAGE P1

KEYWDS PROTEIN-DNA COMPLEX

EXPDTA THEORETICAL MODEL

AUTHOR B.M.SWALLA,R.I.GUMPORT,J.F.GARDNER

REVDAT 1 11-FEB-03 1M97 0

JRNL AUTH B.M.SWALLA,R.I.GUMPORT,J.F.GARDNER JRNL TITL CONSERVATION OF STRUCTURE AND FUNCTION AMONG JRNL TITL 2 TYROSINE RECOMBINASES: HOMOLOGY-BASED MODELING OF JRNL TITL 3 THE LAMBDA INTEGRASE CORE-BINDING DOMAIN JRNL REF NUCLEIC ACIDS RES. V. 31 805 2003 JRNL REFN ASTM NARHAD UK ISSN 0305-1048

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1M97 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-2002. REMARK 100 THE RCSB ID CODE IS RCSB016753.

REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O2P A B 24 CD LYS A 93 1.79 REMARK 500 O1P A C 12 NZ LYS A 136 1.82 REMARK 500 O2P A B 24 CE LYS A 93 2.01 REMARK 500 C2* A B 24 NZ LYS A 95 2.04 REMARK 500 O5* A B 24 NZ LYS A 95 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 139 -38.10 60.24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 138 SER A 139 141.74

DBREF 1M97 A 76 171 UNP P03700 VINT_LAMBD 76 171

SEQRES 1 A 96 LEU HIS SER TRP LEU ASP ARG TYR GLU LYS ILE LEU ALA SEQRES 2 A 96 SER ARG GLY ILE LYS GLN LYS THR LEU ILE ASN TYR MET SEQRES 3 A 96 SER LYS ILE LYS ALA ILE ARG ARG GLY LEU PRO ASP ALA SEQRES 4 A 96 PRO LEU GLU ASP ILE THR THR LYS GLU ILE ALA ALA MET SEQRES 5 A 96 LEU ASN GLY TYR ILE ASP GLU GLY LYS ALA ALA SER ALA SEQRES 6 A 96 LYS LEU ILE ARG SER THR LEU SER ASP ALA PHE ARG GLU SEQRES 7 A 96 ALA ILE ALA GLU GLY HIS ILE THR THR ASN HIS VAL ALA SEQRES 8 A 96 ALA THR ARG ALA ALA SEQRES 1 B 9 G C T A T A C G A SEQRES 1 C 9 T C G T A T A G C

HELIX 1 1 LEU A 76 GLY A 91 1 16 HELIX 2 2 LYS A 93 LEU A 111 1 19 HELIX 3 3 THR A 120 GLU A 134 1 15 HELIX 4 4 SER A 139 GLU A 153 1 15 HELIX 5 5 GLY A 158 THR A 161 5 4 HELIX 6 6 THR A 162 ARG A 169 1 8

CISPEP 1 GLU A 117 ASP A 118 0 -6.86

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000