1M8L - Header Asymmetric Unit

HEADER VIRAL PROTEIN 25-JUL-02 1M8L

TITLE NMR STRUCTURE OF THE HIV-1 REGULATORY PROTEIN VPR

COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE IS NATURALLY FOUND IN HUMAN IMMUNODEFICIENCY SOURCE 5 VIRUS TYPE 1 (HIV-1).

KEYWDS VPR, CD3CN, NMR STRUCTURE, HIV-1, VIRAL PROTEIN

EXPDTA SOLUTION NMR

AUTHOR N.MORELLET,S.BOUAZIZ,C.LENOIR,B.P.ROQUES

REVDAT 2 24-FEB-09 1M8L 1 VERSN REVDAT 1 18-MAR-03 1M8L 0

JRNL AUTH N.MORELLET,S.BOUAZIZ,C.LENOIR,B.P.ROQUES JRNL TITL NMR STRUCTURE OF THE HIV-1 REGULATORY PROTEIN VPR JRNL REF J.MOL.BIOL. V. 327 215 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12614620 JRNL DOI 10.1016/S0022-2836(03)00060-3

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 98.0 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 1115 RESTRAINTS

REMARK 4 REMARK 4 1M8L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-02. REMARK 100 THE RCSB ID CODE IS RCSB016731.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 2.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM VPR 70% H2O, 30% CD3CN REMARK 210 PH 2.6 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, HSQC- REMARK 210 NOESY, HSQC-TOCSY, 3D HSQC- REMARK 210 NOESY, 3D HSQC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D AND 3D REMARK 210 HOMONUCLEAR AND HETERONUCLEAR TECHNIQUES

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 2 CD GLU A 2 OE2 0.111 REMARK 500 GLU A 6 CD GLU A 6 OE2 0.112 REMARK 500 GLU A 13 CD GLU A 13 OE2 0.111 REMARK 500 GLU A 21 CD GLU A 21 OE2 0.114 REMARK 500 GLU A 24 CD GLU A 24 OE2 0.112 REMARK 500 GLU A 25 CD GLU A 25 OE2 0.111 REMARK 500 GLU A 29 CD GLU A 29 OE2 0.112 REMARK 500 GLU A 48 CD GLU A 48 OE2 0.113 REMARK 500 GLU A 58 CD GLU A 58 OE2 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 8 95.82 -67.19 REMARK 500 GLU A 13 85.27 45.21 REMARK 500 ASP A 17 -61.71 -167.83 REMARK 500 ILE A 37 -22.06 78.21 REMARK 500 ARG A 77 -71.75 -69.73 REMARK 500 THR A 89 -75.66 -77.67 REMARK 500 ALA A 93 -80.74 59.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 34 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

DBREF 1M8L A 1 96 UNP Q73369 Q73369_9HIV1 1 96

SEQRES 1 A 96 MET GLU GLN ALA PRO GLU ASP GLN GLY PRO GLN ARG GLU SEQRES 2 A 96 PRO TYR ASN ASP TRP THR LEU GLU LEU LEU GLU GLU LEU SEQRES 3 A 96 LYS ASN GLU ALA VAL ARG HIS PHE PRO ARG ILE TRP LEU SEQRES 4 A 96 HIS SER LEU GLY GLN HIS ILE TYR GLU THR TYR GLY ASP SEQRES 5 A 96 THR TRP THR GLY VAL GLU ALA LEU ILE ARG ILE LEU GLN SEQRES 6 A 96 GLN LEU LEU PHE ILE HIS PHE ARG ILE GLY CYS ARG HIS SEQRES 7 A 96 SER ARG ILE GLY ILE ILE GLN GLN ARG ARG THR ARG ASN SEQRES 8 A 96 GLY ALA SER LYS SER

HELIX 1 1 ASP A 17 PHE A 34 1 18 HELIX 2 2 ILE A 37 TYR A 50 1 14 HELIX 3 3 THR A 53 HIS A 78 1 26

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000