10 20 30 40 50 60 70 80 1M6W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 17-JUL-02 1M6W
TITLE BINARY COMPLEX OF HUMAN GLUTATHIONE-DEPENDENT FORMALDEHYDE TITLE 2 DEHYDROGENASE AND 12-HYDROXYDODECANOIC ACID
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALCOHOL DEHYDROGENASE CLASS III CHI CHAIN; COMPND 5 ALCOHOL DEHYDROGENASE (CLASS III), CHI POLYPEPTIDE; FDH; COMPND 6 E.C.1.2.1.1; COMPND 7 EC: 1.1.1.1; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: APOENZYME
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADH5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TG-1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK223-3
KEYWDS GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE, CLASS III KEYWDS 2 ALCOHOL DEHYDROGENASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR P.C.SANGHANI,H.ROBINSON,W.F.BOSRON,T.D.HURLEY
REVDAT 5 24-FEB-09 1M6W 1 VERSN REVDAT 4 01-APR-03 1M6W 1 JRNL REVDAT 3 27-SEP-02 1M6W 1 JRNL REVDAT 2 05-AUG-02 1M6W 1 HETNAM FORMUL CONECT HETATM REVDAT 2 2 1 REMARK REVDAT 1 26-JUL-02 1M6W 0
JRNL AUTH P.C.SANGHANI,H.ROBINSON,W.F.BOSRON,T.D.HURLEY JRNL TITL HUMAN GLUTATHIONE-DEPENDENT FORMALDEHYDE JRNL TITL 2 DEHYDROGENASE. STRUCTURES OF APO, BINARY, AND JRNL TITL 3 INHIBITORY TERNARY COMPLEXES. JRNL REF BIOCHEMISTRY V. 41 10778 2002 JRNL REFN ISSN 0006-2960 JRNL PMID 12196016 JRNL DOI 10.1021/BI0257639
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 43801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2278 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6391 REMARK 3 BIN R VALUE (WORKING SET) : 0.2031 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 235 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 667 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 35.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1M6W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016670.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2667, 1.2827, 1.2837 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 23.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, POTASSIUM PHOSPHATE, ZINC REMARK 280 SULPHATE, DITHIOTHREITOL, PH 7.1, VAPOR DIFFUSION, SITTING REMARK 280 DROP AT 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 154.70850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.31600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 232.06275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.31600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.31600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.35425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.31600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.31600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 232.06275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.31600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.31600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.35425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 154.70850 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 114 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 64 -168.73 -72.38 REMARK 500 GLN A 95 86.35 -157.15 REMARK 500 CYS A 131 116.76 -163.50 REMARK 500 LYS A 167 -63.11 -122.16 REMARK 500 CYS A 173 -89.00 -158.18 REMARK 500 LEU A 199 44.54 -103.81 REMARK 500 VAL A 293 -24.58 -142.98 REMARK 500 ALA A 294 -162.79 -127.97 REMARK 500 ALA A 295 48.64 -153.08 REMARK 500 SER A 296 -38.84 -19.41 REMARK 500 VAL A 341 -49.73 -139.39 REMARK 500 LYS A 365 74.42 -115.65 REMARK 500 SER A 366 152.57 152.54 REMARK 500 GLN B 95 85.18 -154.15 REMARK 500 LYS B 167 -60.96 -122.73 REMARK 500 CYS B 173 -74.47 -161.57 REMARK 500 VAL B 341 -51.78 -137.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 110 SG REMARK 620 2 CYS A 99 SG 117.4 REMARK 620 3 CYS A 96 SG 108.4 103.0 REMARK 620 4 CYS A 102 SG 102.0 110.7 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 NE2 REMARK 620 2 12H A4378 O13 71.4 REMARK 620 3 CYS A 44 SG 104.1 109.7 REMARK 620 4 CYS A 173 SG 112.2 115.4 128.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2001 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 186 O REMARK 620 2 GLU A 189 OE2 142.9 REMARK 620 3 LYS A 187 O 67.4 86.0 REMARK 620 4 HOH B5708 O 146.8 66.5 144.7 REMARK 620 5 HOH A4479 O 89.9 111.2 156.6 58.6 REMARK 620 6 HOH A4422 O 82.5 133.3 113.1 75.9 67.1 REMARK 620 7 TYR A 263 OH 88.9 67.7 95.6 93.8 77.7 143.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1375 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 102 SG REMARK 620 2 CYS B 96 SG 111.7 REMARK 620 3 CYS B 110 SG 104.3 108.5 REMARK 620 4 CYS B 99 SG 105.3 107.9 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1376 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 173 SG REMARK 620 2 HIS B 66 NE2 114.8 REMARK 620 3 12H B5378 O13 107.5 119.6 REMARK 620 4 CYS B 44 SG 120.8 103.6 88.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B2002 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 189 OE2 REMARK 620 2 TYR B 263 OH 68.6 REMARK 620 3 HOH B5580 O 69.0 103.4 REMARK 620 4 HOH B5660 O 136.0 145.2 74.3 REMARK 620 5 LYS B 187 O 86.4 94.1 141.3 109.3 REMARK 620 6 HOH B5520 O 117.6 82.0 66.3 65.1 151.5 REMARK 620 7 ALA B 186 O 143.8 88.8 146.3 78.0 66.6 85.0 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1375 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1376 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1375 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1376 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 2001 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 2002 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3001 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3002 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 3003 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12H A 4378 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 12H B 5378
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6H RELATED DB: PDB REMARK 900 RELATED ID: 1MA0 RELATED DB: PDB
DBREF 1M6W A 1 373 UNP P11766 ADHX_HUMAN 1 373 DBREF 1M6W B 1 373 UNP P11766 ADHX_HUMAN 1 373
SEQRES 1 A 373 ALA ASN GLU VAL ILE LYS CYS LYS ALA ALA VAL ALA TRP SEQRES 2 A 373 GLU ALA GLY LYS PRO LEU SER ILE GLU GLU ILE GLU VAL SEQRES 3 A 373 ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS ILE ILE SEQRES 4 A 373 ALA THR ALA VAL CYS HIS THR ASP ALA TYR THR LEU SER SEQRES 5 A 373 GLY ALA ASP PRO GLU GLY CYS PHE PRO VAL ILE LEU GLY SEQRES 6 A 373 HIS GLU GLY ALA GLY ILE VAL GLU SER VAL GLY GLU GLY SEQRES 7 A 373 VAL THR LYS LEU LYS ALA GLY ASP THR VAL ILE PRO LEU SEQRES 8 A 373 TYR ILE PRO GLN CYS GLY GLU CYS LYS PHE CYS LEU ASN SEQRES 9 A 373 PRO LYS THR ASN LEU CYS GLN LYS ILE ARG VAL THR GLN SEQRES 10 A 373 GLY LYS GLY LEU MET PRO ASP GLY THR SER ARG PHE THR SEQRES 11 A 373 CYS LYS GLY LYS THR ILE LEU HIS TYR MET GLY THR SER SEQRES 12 A 373 THR PHE SER GLU TYR THR VAL VAL ALA ASP ILE SER VAL SEQRES 13 A 373 ALA LYS ILE ASP PRO LEU ALA PRO LEU ASP LYS VAL CYS SEQRES 14 A 373 LEU LEU GLY CYS GLY ILE SER THR GLY TYR GLY ALA ALA SEQRES 15 A 373 VAL ASN THR ALA LYS LEU GLU PRO GLY SER VAL CYS ALA SEQRES 16 A 373 VAL PHE GLY LEU GLY GLY VAL GLY LEU ALA VAL ILE MET SEQRES 17 A 373 GLY CYS LYS VAL ALA GLY ALA SER ARG ILE ILE GLY VAL SEQRES 18 A 373 ASP ILE ASN LYS ASP LYS PHE ALA ARG ALA LYS GLU PHE SEQRES 19 A 373 GLY ALA THR GLU CYS ILE ASN PRO GLN ASP PHE SER LYS SEQRES 20 A 373 PRO ILE GLN GLU VAL LEU ILE GLU MET THR ASP GLY GLY SEQRES 21 A 373 VAL ASP TYR SER PHE GLU CYS ILE GLY ASN VAL LYS VAL SEQRES 22 A 373 MET ARG ALA ALA LEU GLU ALA CYS HIS LYS GLY TRP GLY SEQRES 23 A 373 VAL SER VAL VAL VAL GLY VAL ALA ALA SER GLY GLU GLU SEQRES 24 A 373 ILE ALA THR ARG PRO PHE GLN LEU VAL THR GLY ARG THR SEQRES 25 A 373 TRP LYS GLY THR ALA PHE GLY GLY TRP LYS SER VAL GLU SEQRES 26 A 373 SER VAL PRO LYS LEU VAL SER GLU TYR MET SER LYS LYS SEQRES 27 A 373 ILE LYS VAL ASP GLU PHE VAL THR HIS ASN LEU SER PHE SEQRES 28 A 373 ASP GLU ILE ASN LYS ALA PHE GLU LEU MET HIS SER GLY SEQRES 29 A 373 LYS SER ILE ARG THR VAL VAL LYS ILE SEQRES 1 B 373 ALA ASN GLU VAL ILE LYS CYS LYS ALA ALA VAL ALA TRP SEQRES 2 B 373 GLU ALA GLY LYS PRO LEU SER ILE GLU GLU ILE GLU VAL SEQRES 3 B 373 ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE LYS ILE ILE SEQRES 4 B 373 ALA THR ALA VAL CYS HIS THR ASP ALA TYR THR LEU SER SEQRES 5 B 373 GLY ALA ASP PRO GLU GLY CYS PHE PRO VAL ILE LEU GLY SEQRES 6 B 373 HIS GLU GLY ALA GLY ILE VAL GLU SER VAL GLY GLU GLY SEQRES 7 B 373 VAL THR LYS LEU LYS ALA GLY ASP THR VAL ILE PRO LEU SEQRES 8 B 373 TYR ILE PRO GLN CYS GLY GLU CYS LYS PHE CYS LEU ASN SEQRES 9 B 373 PRO LYS THR ASN LEU CYS GLN LYS ILE ARG VAL THR GLN SEQRES 10 B 373 GLY LYS GLY LEU MET PRO ASP GLY THR SER ARG PHE THR SEQRES 11 B 373 CYS LYS GLY LYS THR ILE LEU HIS TYR MET GLY THR SER SEQRES 12 B 373 THR PHE SER GLU TYR THR VAL VAL ALA ASP ILE SER VAL SEQRES 13 B 373 ALA LYS ILE ASP PRO LEU ALA PRO LEU ASP LYS VAL CYS SEQRES 14 B 373 LEU LEU GLY CYS GLY ILE SER THR GLY TYR GLY ALA ALA SEQRES 15 B 373 VAL ASN THR ALA LYS LEU GLU PRO GLY SER VAL CYS ALA SEQRES 16 B 373 VAL PHE GLY LEU GLY GLY VAL GLY LEU ALA VAL ILE MET SEQRES 17 B 373 GLY CYS LYS VAL ALA GLY ALA SER ARG ILE ILE GLY VAL SEQRES 18 B 373 ASP ILE ASN LYS ASP LYS PHE ALA ARG ALA LYS GLU PHE SEQRES 19 B 373 GLY ALA THR GLU CYS ILE ASN PRO GLN ASP PHE SER LYS SEQRES 20 B 373 PRO ILE GLN GLU VAL LEU ILE GLU MET THR ASP GLY GLY SEQRES 21 B 373 VAL ASP TYR SER PHE GLU CYS ILE GLY ASN VAL LYS VAL SEQRES 22 B 373 MET ARG ALA ALA LEU GLU ALA CYS HIS LYS GLY TRP GLY SEQRES 23 B 373 VAL SER VAL VAL VAL GLY VAL ALA ALA SER GLY GLU GLU SEQRES 24 B 373 ILE ALA THR ARG PRO PHE GLN LEU VAL THR GLY ARG THR SEQRES 25 B 373 TRP LYS GLY THR ALA PHE GLY GLY TRP LYS SER VAL GLU SEQRES 26 B 373 SER VAL PRO LYS LEU VAL SER GLU TYR MET SER LYS LYS SEQRES 27 B 373 ILE LYS VAL ASP GLU PHE VAL THR HIS ASN LEU SER PHE SEQRES 28 B 373 ASP GLU ILE ASN LYS ALA PHE GLU LEU MET HIS SER GLY SEQRES 29 B 373 LYS SER ILE ARG THR VAL VAL LYS ILE
HET ZN A1375 1 HET ZN A1376 1 HET ZN B1375 1 HET ZN B1376 1 HET K A2001 1 HET K B2002 1 HET PO4 A3001 5 HET PO4 A3002 5 HET PO4 A3003 5 HET 12H A4378 15 HET 12H B5378 15
HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION HETNAM 12H 12-HYDROXYDODECANOIC ACID
FORMUL 3 ZN 4(ZN 2+) FORMUL 7 K 2(K 1+) FORMUL 9 PO4 3(O4 P 3-) FORMUL 12 12H 2(C12 H24 O3) FORMUL 14 HOH *667(H2 O)
HELIX 1 1 CYS A 44 GLY A 53 1 10 HELIX 2 2 CYS A 99 ASN A 104 1 6 HELIX 3 3 ILE A 113 LYS A 119 1 7 HELIX 4 4 PRO A 164 CYS A 169 1 6 HELIX 5 5 LEU A 170 GLY A 172 5 3 HELIX 6 6 CYS A 173 ASN A 184 1 12 HELIX 7 7 GLY A 200 ALA A 213 1 14 HELIX 8 8 ASN A 224 ASP A 226 5 3 HELIX 9 9 LYS A 227 GLY A 235 1 9 HELIX 10 10 ASN A 241 PHE A 245 5 5 HELIX 11 11 PRO A 248 THR A 257 1 10 HELIX 12 12 ASN A 270 ALA A 280 1 11 HELIX 13 13 ARG A 303 THR A 309 1 7 HELIX 14 14 ALA A 317 TRP A 321 5 5 HELIX 15 15 LYS A 322 SER A 336 1 15 HELIX 16 16 VAL A 341 GLU A 343 5 3 HELIX 17 17 GLU A 353 SER A 363 1 11 HELIX 18 18 CYS B 44 GLY B 53 1 10 HELIX 19 19 CYS B 99 ASN B 104 1 6 HELIX 20 20 ILE B 113 LYS B 119 1 7 HELIX 21 21 PRO B 164 CYS B 169 1 6 HELIX 22 22 LEU B 170 GLY B 172 5 3 HELIX 23 23 CYS B 173 ASN B 184 1 12 HELIX 24 24 GLY B 200 ALA B 213 1 14 HELIX 25 25 ASN B 224 ASP B 226 5 3 HELIX 26 26 LYS B 227 GLY B 235 1 9 HELIX 27 27 ASN B 241 PHE B 245 5 5 HELIX 28 28 PRO B 248 THR B 257 1 10 HELIX 29 29 ASN B 270 ALA B 280 1 11 HELIX 30 30 PRO B 304 THR B 309 1 6 HELIX 31 31 ALA B 317 TRP B 321 5 5 HELIX 32 32 LYS B 322 SER B 336 1 15 HELIX 33 33 VAL B 341 GLU B 343 5 3 HELIX 34 34 GLU B 353 SER B 363 1 11
SHEET 1 A 4 ILE A 5 VAL A 11 0 SHEET 2 A 4 SER A 20 VAL A 26 -1 O ILE A 24 N CYS A 7 SHEET 3 A 4 PHE A 129 CYS A 131 -1 O THR A 130 N GLU A 25 SHEET 4 A 4 LYS A 134 ILE A 136 -1 O LYS A 134 N CYS A 131 SHEET 1 B 5 VAL A 156 LYS A 158 0 SHEET 2 B 5 THR A 87 PRO A 90 -1 N ILE A 89 O ALA A 157 SHEET 3 B 5 GLU A 67 VAL A 75 -1 N GLY A 70 O VAL A 88 SHEET 4 B 5 GLU A 33 ALA A 42 -1 N LYS A 37 O ILE A 71 SHEET 5 B 5 TYR A 148 ALA A 152 -1 O VAL A 151 N VAL A 34 SHEET 1 C 6 VAL A 156 LYS A 158 0 SHEET 2 C 6 THR A 87 PRO A 90 -1 N ILE A 89 O ALA A 157 SHEET 3 C 6 GLU A 67 VAL A 75 -1 N GLY A 70 O VAL A 88 SHEET 4 C 6 GLU A 33 ALA A 42 -1 N LYS A 37 O ILE A 71 SHEET 5 C 6 ARG A 368 LYS A 372 -1 O VAL A 371 N THR A 41 SHEET 6 C 6 VAL A 345 SER A 350 1 N LEU A 349 O LYS A 372 SHEET 1 D 6 GLU A 238 ILE A 240 0 SHEET 2 D 6 ARG A 217 VAL A 221 1 N GLY A 220 O GLU A 238 SHEET 3 D 6 VAL A 193 PHE A 197 1 N CYS A 194 O ARG A 217 SHEET 4 D 6 TYR A 263 GLU A 266 1 O PHE A 265 N PHE A 197 SHEET 5 D 6 VAL A 287 VAL A 291 1 O VAL A 289 N SER A 264 SHEET 6 D 6 THR A 312 THR A 316 1 O LYS A 314 N SER A 288 SHEET 1 E 2 ILE A 300 THR A 302 0 SHEET 2 E 2 ILE B 300 THR B 302 -1 O THR B 302 N ILE A 300 SHEET 1 F 4 ILE B 5 VAL B 11 0 SHEET 2 F 4 SER B 20 VAL B 26 -1 O ILE B 24 N CYS B 7 SHEET 3 F 4 PHE B 129 CYS B 131 -1 O THR B 130 N GLU B 25 SHEET 4 F 4 LYS B 134 ILE B 136 -1 O LYS B 134 N CYS B 131 SHEET 1 G 5 VAL B 156 LYS B 158 0 SHEET 2 G 5 THR B 87 PRO B 90 -1 N ILE B 89 O ALA B 157 SHEET 3 G 5 GLU B 67 VAL B 75 -1 N GLY B 70 O VAL B 88 SHEET 4 G 5 GLU B 33 ALA B 42 -1 N LYS B 37 O ILE B 71 SHEET 5 G 5 TYR B 148 ALA B 152 -1 O THR B 149 N ILE B 36 SHEET 1 H 6 VAL B 156 LYS B 158 0 SHEET 2 H 6 THR B 87 PRO B 90 -1 N ILE B 89 O ALA B 157 SHEET 3 H 6 GLU B 67 VAL B 75 -1 N GLY B 70 O VAL B 88 SHEET 4 H 6 GLU B 33 ALA B 42 -1 N LYS B 37 O ILE B 71 SHEET 5 H 6 ARG B 368 LYS B 372 -1 O VAL B 371 N THR B 41 SHEET 6 H 6 VAL B 345 SER B 350 1 N LEU B 349 O LYS B 372 SHEET 1 I 6 GLU B 238 ILE B 240 0 SHEET 2 I 6 ARG B 217 VAL B 221 1 N GLY B 220 O ILE B 240 SHEET 3 I 6 VAL B 193 PHE B 197 1 N CYS B 194 O ILE B 219 SHEET 4 I 6 TYR B 263 GLU B 266 1 O PHE B 265 N PHE B 197 SHEET 5 I 6 VAL B 287 VAL B 290 1 O VAL B 289 N SER B 264 SHEET 6 I 6 THR B 312 GLY B 315 1 O LYS B 314 N SER B 288
LINK ZN ZN A1375 SG CYS A 110 1555 1555 2.24 LINK ZN ZN A1375 SG CYS A 99 1555 1555 2.48 LINK ZN ZN A1375 SG CYS A 96 1555 1555 2.36 LINK ZN ZN A1375 SG CYS A 102 1555 1555 2.27 LINK ZN ZN A1376 NE2 HIS A 66 1555 1555 2.14 LINK ZN ZN A1376 O13 12H A4378 1555 1555 2.04 LINK ZN ZN A1376 SG CYS A 44 1555 1555 2.39 LINK ZN ZN A1376 SG CYS A 173 1555 1555 2.24 LINK K K A2001 O ALA A 186 1555 1555 2.91 LINK K K A2001 OE2 GLU A 189 1555 1555 2.88 LINK K K A2001 O LYS A 187 1555 1555 2.85 LINK K K A2001 O HOH B5708 1555 1555 3.11 LINK K K A2001 O HOH A4479 1555 1555 2.93 LINK K K A2001 O HOH A4422 1555 1555 3.07 LINK K K A2001 OH TYR A 263 1555 1555 2.79 LINK ZN ZN B1375 SG CYS B 102 1555 1555 2.30 LINK ZN ZN B1375 SG CYS B 96 1555 1555 2.36 LINK ZN ZN B1375 SG CYS B 110 1555 1555 2.30 LINK ZN ZN B1375 SG CYS B 99 1555 1555 2.35 LINK ZN ZN B1376 SG CYS B 173 1555 1555 2.31 LINK ZN ZN B1376 NE2 HIS B 66 1555 1555 2.06 LINK ZN ZN B1376 O13 12H B5378 1555 1555 1.96 LINK ZN ZN B1376 SG CYS B 44 1555 1555 2.37 LINK K K B2002 OE2 GLU B 189 1555 1555 2.93 LINK K K B2002 OH TYR B 263 1555 1555 2.71 LINK K K B2002 O HOH B5580 1555 1555 2.88 LINK K K B2002 O HOH B5660 1555 1555 3.01 LINK K K B2002 O LYS B 187 1555 1555 2.79 LINK K K B2002 O HOH B5520 1555 1555 3.05 LINK K K B2002 O ALA B 186 1555 1555 2.87
CISPEP 1 PHE A 60 PRO A 61 0 -0.33 CISPEP 2 PHE B 60 PRO B 61 0 0.00
SITE 1 AC1 4 CYS A 96 CYS A 99 CYS A 102 CYS A 110 SITE 1 AC2 4 CYS A 44 HIS A 66 CYS A 173 12H A4378 SITE 1 AC3 4 CYS B 96 CYS B 99 CYS B 102 CYS B 110 SITE 1 AC4 4 CYS B 44 HIS B 66 CYS B 173 12H B5378 SITE 1 AC5 6 ALA A 186 LYS A 187 GLU A 189 TYR A 263 SITE 2 AC5 6 HOH A4422 HOH A4479 SITE 1 AC6 7 ALA B 186 LYS B 187 GLU B 189 TYR B 263 SITE 2 AC6 7 HOH B5520 HOH B5580 HOH B5660 SITE 1 AC7 4 LYS A 314 HOH A4422 HOH A4560 LYS B 314 SITE 1 AC8 7 LYS A 83 LYS A 158 HOH A4470 HOH A4577 SITE 2 AC8 7 HOH A4592 HOH A4632 LYS B 83 SITE 1 AC9 8 HIS A 45 GLY A 201 VAL A 202 ARG A 368 SITE 2 AC9 8 HOH A4411 HOH A4570 HOH A4603 HOH A4628 SITE 1 BC1 14 CYS A 44 THR A 46 HIS A 66 TYR A 92 SITE 2 BC1 14 LEU A 109 GLN A 111 ARG A 114 MET A 140 SITE 3 BC1 14 CYS A 173 GLY A 292 ALA A 317 ZN A1376 SITE 4 BC1 14 HOH A4395 LYS B 283 SITE 1 BC2 12 LYS A 283 CYS B 44 THR B 46 HIS B 66 SITE 2 BC2 12 TYR B 92 GLN B 111 ARG B 114 CYS B 173 SITE 3 BC2 12 VAL B 293 ALA B 317 ZN B1376 HOH B5451
CRYST1 78.632 78.632 309.417 90.00 90.00 90.00 P 43 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012717 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012717 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003232 0.00000