1M3C - Header Asymmetric Unit

HEADER PROTEIN BINDING 27-JUN-02 1M3C

TITLE SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE N-TERMINAL SH3 TITLE 2 DOMAIN (E132C, E133G, R191G MUTANT) FROM ONCOGENE PROTEIN TITLE 3 C-CRK

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE C-CRK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SH3 DOMAIN (RESIDUES 132-191); COMPND 5 SYNONYM: P38, ADAPTER MOLECULE CRK; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1

KEYWDS SH3, SH3 DOMAIN, CIRCULAR PROTEIN, CYCLIZED PROTEIN, KEYWDS 2 ADAPTOR PROTEIN, PROTEIN BINDING

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR F.H.SCHUMANN,R.VARADAN,P.P.TAYAKUNIYIL,J.B.HALL, AUTHOR 2 J.A.CAMARERO,D.FUSHMAN

REVDAT 2 24-FEB-09 1M3C 1 VERSN REVDAT 1 05-AUG-03 1M3C 0

JRNL AUTH F.H.SCHUMANN,R.VARADAN,P.P.TAYAKUNIYIL,J.B.HALL, JRNL AUTH 2 J.A.CAMARERO,D.FUSHMAN JRNL TITL CHANGING PROTEIN BACKBONE TOPOLOGY: STRUCTURAL AND JRNL TITL 2 DYNAMIC CONSEQUENCES OF THE BACKBONE CYCLIZATION JRNL TITL 3 IN SH3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.CAMARERO,D.FUSHMAN,S.SATO,I.GIRIAT,D.COWBURN, REMARK 1 AUTH 2 D.P.RALEIGH,T.W.MUIR REMARK 1 TITL RESCUING A DESTABILIZED PROTEIN FOLD THROUGH REMARK 1 TITL 2 BACKBONE CYCLIZATION REMARK 1 REF J.MOL.BIOL. V. 308 1045 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2001.4631

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : GUENTERT, WUETHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1010 REMARK 3 RESTRAINTS, 913 ARE NOE-DERIVED DISTANCE CONTRAINTS, 25 REMARK 3 DIHEDRAL ANGLE CONSTRAINTS, AND 72 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS. STRUCTURES WERE CALCULATED USING PROGRAM REMARK 3 DYANA. NO FURTHER REFINEMENT WAS PERFORMED.

REMARK 4 REMARK 4 1M3C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016545.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 307 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SH3 NA, 20MM SODIUM REMARK 210 PHOSPHATE, 20 MM DTT-D10, 100 REMARK 210 MM NACL, 0.1% (W/V) NAN3; 1MM REMARK 210 SH3 U-15N, 20MM SODIUM REMARK 210 PHOSPHATE, 20 MM DTT-D10, 100 REMARK 210 MM NACL, 0.1% (W/V) NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY, DQF-COSY, REMARK 210 2D HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6,3.0, XEASY REMARK 210 1.3.1.3., DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING COMBINED REMARK 210 WITH TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES COMBINED WITH 2D 1H-15N HSQC DATA.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 135 69.02 39.05 REMARK 500 1 PHE A 143 59.82 179.00 REMARK 500 1 ASN A 146 66.28 -167.53 REMARK 500 1 LYS A 154 -167.22 -126.56 REMARK 500 1 ARG A 162 -69.27 -97.70 REMARK 500 1 ASP A 174 -177.38 -68.63 REMARK 500 1 GLU A 176 22.68 -175.35 REMARK 500 2 ALA A 134 -159.64 68.40 REMARK 500 2 PHE A 143 34.73 -179.36 REMARK 500 2 ASN A 146 -50.19 -177.74 REMARK 500 2 ASP A 147 154.82 -42.10 REMARK 500 2 GLU A 148 46.21 -90.94 REMARK 500 2 GLU A 149 -46.52 -144.20 REMARK 500 2 LYS A 154 -90.77 -121.27 REMARK 500 2 LYS A 164 84.98 -164.74 REMARK 500 2 ASP A 174 -164.22 -72.44 REMARK 500 2 GLU A 176 28.45 -177.22 REMARK 500 3 ALA A 134 109.61 56.54 REMARK 500 3 PHE A 143 -42.35 -149.03 REMARK 500 3 ASN A 144 169.39 58.61 REMARK 500 3 ASN A 146 57.33 -157.42 REMARK 500 3 GLU A 148 58.01 -101.67 REMARK 500 3 GLU A 149 -43.74 -179.51 REMARK 500 3 LYS A 154 -164.91 -127.13 REMARK 500 3 LYS A 164 64.14 -165.23 REMARK 500 3 GLN A 168 -57.82 -159.44 REMARK 500 3 ASP A 174 -168.50 -73.99 REMARK 500 3 GLU A 176 16.85 -175.11 REMARK 500 4 ALA A 134 77.96 -168.59 REMARK 500 4 GLU A 135 75.54 46.66 REMARK 500 4 PHE A 143 29.22 -170.09 REMARK 500 4 ASN A 144 169.73 -47.25 REMARK 500 4 ASN A 146 -53.68 -176.87 REMARK 500 4 ASP A 147 -171.77 46.04 REMARK 500 4 LYS A 154 -82.26 -121.60 REMARK 500 4 LYS A 155 108.63 -175.25 REMARK 500 4 LYS A 164 63.08 -157.81 REMARK 500 4 GLU A 167 45.77 -106.99 REMARK 500 4 GLN A 168 -59.53 -167.03 REMARK 500 4 ASP A 174 -163.92 -74.60 REMARK 500 4 SER A 175 47.04 -89.32 REMARK 500 4 GLU A 176 24.51 -169.68 REMARK 500 5 GLU A 135 74.88 39.14 REMARK 500 5 PHE A 143 36.09 -179.14 REMARK 500 5 ASN A 144 107.36 -40.99 REMARK 500 5 ASN A 146 -51.56 -174.39 REMARK 500 5 ASP A 147 154.40 -40.54 REMARK 500 5 LYS A 154 -164.42 -128.56 REMARK 500 5 ASP A 174 -174.73 -66.43 REMARK 500 5 GLU A 176 11.25 -172.21 REMARK 500 5 TYR A 190 -149.89 -61.57 REMARK 500 6 ALA A 134 -159.17 179.39 REMARK 500 6 PHE A 143 81.87 166.55 REMARK 500 6 ASN A 144 154.58 -39.58 REMARK 500 6 ASN A 146 76.56 166.39 REMARK 500 6 ASP A 147 -81.40 -159.72 REMARK 500 6 GLU A 148 74.24 -113.95 REMARK 500 6 GLU A 149 -29.26 98.42 REMARK 500 6 ASP A 150 136.43 60.68 REMARK 500 6 LYS A 154 -156.10 -135.61 REMARK 500 6 GLU A 176 -4.39 176.86 REMARK 500 7 ALA A 134 85.79 -158.38 REMARK 500 7 GLU A 135 68.68 30.87 REMARK 500 7 PHE A 143 59.84 177.46 REMARK 500 7 ASN A 146 -35.74 175.30 REMARK 500 7 ASP A 147 -91.78 -41.52 REMARK 500 7 GLU A 148 39.35 175.72 REMARK 500 7 GLU A 149 46.31 170.48 REMARK 500 7 LYS A 154 -164.04 -125.90 REMARK 500 7 GLU A 176 27.05 -173.82 REMARK 500 8 ALA A 134 -98.89 179.96 REMARK 500 8 GLU A 135 59.01 -105.91 REMARK 500 8 PHE A 143 69.29 -179.88 REMARK 500 8 ASN A 144 145.91 -39.93 REMARK 500 8 ASN A 146 25.94 45.42 REMARK 500 8 GLU A 148 69.47 -115.72 REMARK 500 8 GLU A 149 25.04 42.34 REMARK 500 8 GLU A 176 9.78 -174.25 REMARK 500 9 ALA A 134 -150.52 -61.32 REMARK 500 9 PHE A 143 82.04 172.17 REMARK 500 9 ASN A 144 163.90 -43.54 REMARK 500 9 ASN A 146 72.08 177.24 REMARK 500 9 ASP A 147 -162.07 -163.14 REMARK 500 9 GLU A 149 -58.59 164.41 REMARK 500 9 ASP A 150 134.15 60.22 REMARK 500 9 LYS A 154 -120.92 -130.00 REMARK 500 9 LYS A 164 91.97 -170.82 REMARK 500 9 GLU A 176 16.68 -167.68 REMARK 500 9 TYR A 190 -86.22 -136.81 REMARK 500 10 ALA A 134 -157.13 71.97 REMARK 500 10 PHE A 143 -40.03 -149.43 REMARK 500 10 ASN A 144 175.00 55.42 REMARK 500 10 ASN A 146 74.02 171.17 REMARK 500 10 ASP A 147 -84.67 -97.30 REMARK 500 10 GLU A 148 36.73 177.51 REMARK 500 10 GLU A 149 -39.04 170.07 REMARK 500 10 LYS A 154 -155.56 -119.76 REMARK 500 10 LYS A 164 82.62 -156.80 REMARK 500 10 GLU A 176 -2.22 -170.93 REMARK 500 11 ALA A 134 -157.20 48.73 REMARK 500 11 PHE A 143 25.40 -174.28 REMARK 500 11 ASN A 144 -157.50 36.67 REMARK 500 11 ASN A 146 52.40 -159.97 REMARK 500 11 LYS A 154 -80.73 -127.02 REMARK 500 11 LYS A 155 115.51 -165.77 REMARK 500 11 LYS A 164 89.16 -167.10 REMARK 500 11 ASP A 174 -169.92 -74.34 REMARK 500 11 GLU A 176 25.48 177.61 REMARK 500 12 ALA A 134 -78.13 -156.14 REMARK 500 12 GLU A 135 44.03 -145.16 REMARK 500 12 PHE A 143 67.82 177.85 REMARK 500 12 ASN A 144 154.69 -38.71 REMARK 500 12 ASN A 146 -51.10 -170.67 REMARK 500 12 ASP A 147 -59.59 -122.83 REMARK 500 12 GLU A 148 -36.02 179.29 REMARK 500 12 LYS A 154 -166.64 -126.10 REMARK 500 12 LYS A 164 84.48 -163.36 REMARK 500 12 GLU A 176 0.22 -177.27 REMARK 500 12 TYR A 190 -61.46 -109.15 REMARK 500 13 ALA A 134 -64.06 -168.97 REMARK 500 13 GLU A 135 76.31 -153.69 REMARK 500 13 PHE A 143 57.31 179.73 REMARK 500 13 ASN A 146 51.50 177.08 REMARK 500 13 ASP A 147 -161.07 45.12 REMARK 500 13 GLU A 148 50.98 79.68 REMARK 500 13 GLU A 149 40.79 76.75 REMARK 500 13 LYS A 154 -99.51 -127.25 REMARK 500 13 GLU A 166 177.24 162.77 REMARK 500 13 GLN A 168 -51.53 178.29 REMARK 500 13 ASP A 174 -164.28 -68.28 REMARK 500 13 GLU A 176 18.62 -178.95 REMARK 500 14 ALA A 134 -156.98 -175.78 REMARK 500 14 GLU A 135 63.06 -119.10 REMARK 500 14 PHE A 143 -33.92 -132.32 REMARK 500 14 ASN A 144 134.83 62.15 REMARK 500 14 ASN A 146 66.31 161.37 REMARK 500 14 ASP A 147 -85.76 -119.22 REMARK 500 14 GLU A 148 46.36 168.36 REMARK 500 14 GLU A 149 -46.21 179.45 REMARK 500 14 LYS A 154 -83.73 -127.32 REMARK 500 14 LYS A 155 113.52 -161.46 REMARK 500 14 GLU A 176 8.25 -176.22 REMARK 500 14 TYR A 190 -77.96 -48.22 REMARK 500 15 ALA A 134 -74.72 -115.93 REMARK 500 15 GLU A 135 61.37 169.76 REMARK 500 15 PHE A 143 30.32 -167.86 REMARK 500 15 ASN A 146 -49.18 -146.16 REMARK 500 15 GLU A 167 51.44 -115.24 REMARK 500 15 GLN A 168 -55.58 -179.25 REMARK 500 15 GLU A 176 8.11 -173.79 REMARK 500 16 ALA A 134 -149.80 -175.17 REMARK 500 16 PHE A 143 -43.94 -151.85 REMARK 500 16 ASN A 144 100.44 51.40 REMARK 500 16 ASP A 147 -66.26 66.64 REMARK 500 16 GLU A 148 40.51 169.91 REMARK 500 16 GLU A 149 -33.29 172.71 REMARK 500 16 LYS A 154 -84.99 -125.86 REMARK 500 16 LYS A 155 113.14 -165.58 REMARK 500 16 ASP A 174 -164.91 -64.51 REMARK 500 16 GLU A 176 22.58 174.16 REMARK 500 17 GLU A 135 61.13 -118.11 REMARK 500 17 PHE A 143 69.53 -179.22 REMARK 500 17 ASN A 144 145.08 -38.64 REMARK 500 17 GLU A 148 47.99 -92.65 REMARK 500 17 GLU A 149 55.68 -178.39 REMARK 500 17 LYS A 154 -158.86 -127.98 REMARK 500 17 ASP A 174 -176.39 -67.20 REMARK 500 17 GLU A 176 7.56 -176.54 REMARK 500 18 ALA A 134 -134.51 -70.16 REMARK 500 18 GLU A 135 61.30 -114.57 REMARK 500 18 PHE A 143 7.94 -150.16 REMARK 500 18 ASN A 144 -153.47 36.06 REMARK 500 18 ASN A 146 57.84 175.52 REMARK 500 18 ASP A 147 -114.46 46.17 REMARK 500 18 GLU A 148 46.51 35.52 REMARK 500 18 LYS A 154 -161.75 -128.92 REMARK 500 18 GLU A 167 54.12 -114.03 REMARK 500 18 GLN A 168 -57.63 -178.50 REMARK 500 18 GLU A 176 9.95 -177.16 REMARK 500 18 TYR A 190 -72.20 -43.54 REMARK 500 19 ALA A 134 -104.64 177.87 REMARK 500 19 GLU A 135 63.46 165.79 REMARK 500 19 PHE A 143 9.66 -154.07 REMARK 500 19 ASN A 144 -154.79 35.13 REMARK 500 19 ASN A 146 58.09 178.93 REMARK 500 19 ASP A 147 -59.30 -139.90 REMARK 500 19 GLU A 148 58.77 -170.42 REMARK 500 19 GLU A 149 51.90 70.05 REMARK 500 19 LEU A 151 106.74 -50.90 REMARK 500 19 LYS A 154 -75.37 -127.00 REMARK 500 19 LYS A 155 109.64 -165.26 REMARK 500 19 PRO A 165 -73.54 -75.04 REMARK 500 19 GLN A 168 -51.35 -157.75 REMARK 500 19 ASP A 174 -169.55 -73.92 REMARK 500 19 GLU A 176 7.23 -176.33 REMARK 500 20 ALA A 134 -105.37 -80.92 REMARK 500 20 GLU A 135 75.96 -166.82 REMARK 500 20 PHE A 143 41.89 -178.99 REMARK 500 20 ASN A 144 161.68 -49.23 REMARK 500 20 ASN A 146 77.44 162.74 REMARK 500 20 GLU A 148 55.62 -92.77 REMARK 500 20 GLU A 149 -45.27 -149.44 REMARK 500 20 LYS A 154 -164.90 -128.49 REMARK 500 20 GLU A 166 179.35 159.93 REMARK 500 20 GLN A 168 -54.35 -178.83 REMARK 500 20 GLU A 176 1.53 -177.56 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M30 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF N-TERMINAL SH3 DOMAIN FROM ONCOGENE REMARK 900 PROTEIN C-CRK REMARK 900 RELATED ID: 1M3A RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE TRUNCATED N- REMARK 900 TERMINAL SH3 DOMAIN FROM ONCOGENE PROTEIN C-CRK. REMARK 900 RELATED ID: 1M3B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE N-TERMINAL SH3 REMARK 900 DOMAIN (A134C,E135G MUTANT) FROM ONCOGENE PROTEIN C-CRK.

DBREF 1M3C A 132 191 UNP Q64010 CRK_MOUSE 132 191

SEQADV 1M3C CYS A 132 UNP Q64010 GLU 132 ENGINEERED SEQADV 1M3C GLY A 133 UNP Q64010 GLU 133 ENGINEERED SEQADV 1M3C GLY A 191 UNP Q64010 ARG 191 ENGINEERED

SEQRES 1 A 60 CYS GLY ALA GLU TYR VAL ARG ALA LEU PHE ASP PHE ASN SEQRES 2 A 60 GLY ASN ASP GLU GLU ASP LEU PRO PHE LYS LYS GLY ASP SEQRES 3 A 60 ILE LEU ARG ILE ARG ASP LYS PRO GLU GLU GLN TRP TRP SEQRES 4 A 60 ASN ALA GLU ASP SER GLU GLY LYS ARG GLY MET ILE PRO SEQRES 5 A 60 VAL PRO TYR VAL GLU LYS TYR GLY

SHEET 1 A 5 ARG A 179 PRO A 183 0 SHEET 2 A 5 TRP A 169 GLU A 173 -1 N TRP A 170 O ILE A 182 SHEET 3 A 5 ASP A 157 ASP A 163 -1 N ARG A 160 O GLU A 173 SHEET 4 A 5 TYR A 136 ALA A 139 -1 N VAL A 137 O LEU A 159 SHEET 5 A 5 VAL A 187 LYS A 189 -1 O GLU A 188 N ARG A 138

LINK N CYS A 132 C GLY A 191 1555 1555 1.49

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000