1M30 - Header Asymmetric Unit

HEADER PROTEIN BINDING 26-JUN-02 1M30

TITLE SOLUTION STRUCTURE OF N-TERMINAL SH3 DOMAIN FROM ONCOGENE TITLE 2 PROTEIN C-CRK

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE C-CRK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SH3 DOMAIN (RESIDUES 134-191); COMPND 5 SYNONYM: P38, ADAPTER MOLECULE CRK; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1

KEYWDS SH3, SH3 DOMAIN, ADAPTOR PROTEIN, PROTEIN BINDING

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR F.H.SCHUMANN,R.VARADAN,P.P.TAYAKUNIYIL,J.B.HALL, AUTHOR 2 J.A.CAMARERO,D.FUSHMAN

REVDAT 2 24-FEB-09 1M30 1 VERSN REVDAT 1 05-AUG-03 1M30 0

JRNL AUTH F.H.SCHUMANN,R.VARADAN,P.P.TAYAKUNIYIL,J.B.HALL, JRNL AUTH 2 J.A.CAMARERO,D.FUSHMAN JRNL TITL CHANGING PROTEIN BACKBONE TOPOLOGY: STRUCTURAL AND JRNL TITL 2 DYNAMIC CONSEQUENCES OF THE BACKBONE CYCLIZATION JRNL TITL 3 IN SH3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.CAMARERO,D.FUSHMAN,S.SATO,I.GIRIAT,D.COWBURN, REMARK 1 AUTH 2 D.P.RALEIGH,T.W.MUIR REMARK 1 TITL RESCUING A DESTABILIZED PROTEIN FOLD THROUGH REMARK 1 TITL 2 BACKBONE CYCLIZATION REMARK 1 REF J.MOL.BIOL. V. 308 1045 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2001.4631

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : GUENTERT, WUETHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1116 REMARK 3 RESTRAINTS, 1019 ARE NOE-DERIVED DISTANCE CONTRAINTS, 25 REMARK 3 DIHEDRAL ANGLE CONSTRAINTS, AND 72 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS. STRUCTURES WERE CALCULATED USING PROGRAM REMARK 3 DYANA. NO FURTHER REFINEMENT WAS PERFORMED.

REMARK 4 REMARK 4 1M30 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016533.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 307 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SH3 NA, 20MM SODIUM REMARK 210 PHOSPHATE, 20 MM DTT-D10, 100 REMARK 210 MM NACL, 0.1% (W/V) NAN3; 1MM REMARK 210 SH3 U-15N, 20MM SODIUM REMARK 210 PHOSPHATE, 20 MM DTT-D10, 100 REMARK 210 MM NACL, 0.1% (W/V) NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY, DQF-COSY, REMARK 210 2D HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, 3.0, XEASY REMARK 210 1.3.1.3, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING COMBINED REMARK 210 WITH TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES COMBINED WITH 2D 1H-15N HSQC DATA.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 139 N GLY A 156 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 135 -37.46 167.87 REMARK 500 1 ASP A 142 159.70 55.03 REMARK 500 1 PHE A 143 -48.49 -165.31 REMARK 500 1 ASN A 144 93.29 50.13 REMARK 500 1 ASN A 146 -18.23 158.51 REMARK 500 1 ASP A 147 173.59 86.60 REMARK 500 1 GLU A 149 -26.99 179.83 REMARK 500 1 LYS A 155 49.46 -80.21 REMARK 500 1 LYS A 164 84.30 -155.10 REMARK 500 2 ASP A 142 156.85 54.04 REMARK 500 2 PHE A 143 -53.00 -162.29 REMARK 500 2 ASN A 144 81.97 54.78 REMARK 500 2 ASN A 146 -22.13 161.07 REMARK 500 2 ASP A 147 174.58 84.37 REMARK 500 2 GLU A 149 -31.05 176.67 REMARK 500 2 LEU A 151 106.96 -56.68 REMARK 500 2 LYS A 164 104.82 -167.93 REMARK 500 3 GLU A 135 -159.79 -105.24 REMARK 500 3 ASP A 142 155.93 58.79 REMARK 500 3 PHE A 143 -46.69 -159.96 REMARK 500 3 ASN A 144 87.17 -7.79 REMARK 500 3 ASN A 146 -25.23 -163.34 REMARK 500 3 GLU A 149 34.16 -175.86 REMARK 500 3 GLU A 166 -98.80 -127.76 REMARK 500 3 GLU A 167 -44.52 -157.83 REMARK 500 3 TYR A 186 -26.61 -38.82 REMARK 500 3 GLU A 188 -161.25 -125.07 REMARK 500 4 GLU A 135 -50.99 -179.80 REMARK 500 4 ASP A 142 158.08 55.70 REMARK 500 4 PHE A 143 -56.28 -159.35 REMARK 500 4 ASN A 144 53.15 70.92 REMARK 500 4 ASN A 146 -18.77 156.05 REMARK 500 4 ASP A 147 172.10 83.87 REMARK 500 4 GLU A 149 -32.12 179.64 REMARK 500 4 LYS A 155 78.24 61.29 REMARK 500 4 ASP A 157 161.32 -39.91 REMARK 500 5 GLU A 135 -58.14 172.60 REMARK 500 5 PHE A 141 -17.73 -142.53 REMARK 500 5 ASP A 142 160.99 55.13 REMARK 500 5 PHE A 143 -43.75 -160.50 REMARK 500 5 ASN A 144 -89.59 18.07 REMARK 500 5 ASN A 146 -18.93 -168.02 REMARK 500 5 GLU A 149 36.10 -179.64 REMARK 500 5 LYS A 164 109.16 -176.54 REMARK 500 5 GLU A 166 -169.85 -100.78 REMARK 500 5 GLU A 188 -161.82 -125.51 REMARK 500 6 GLU A 135 -36.61 171.61 REMARK 500 6 ASP A 142 163.62 54.45 REMARK 500 6 PHE A 143 -36.94 -161.37 REMARK 500 6 ASN A 144 85.84 -35.67 REMARK 500 6 ASN A 146 -33.66 -151.27 REMARK 500 6 GLU A 149 -26.99 170.70 REMARK 500 6 LYS A 164 88.13 -157.27 REMARK 500 7 GLU A 135 -36.28 156.35 REMARK 500 7 ASP A 142 165.35 50.42 REMARK 500 7 PHE A 143 -44.33 -159.03 REMARK 500 7 ASN A 144 92.69 19.16 REMARK 500 7 ASN A 146 6.03 149.62 REMARK 500 7 GLU A 149 -26.93 169.54 REMARK 500 7 LYS A 155 90.28 -65.62 REMARK 500 7 GLU A 166 -164.78 -109.21 REMARK 500 7 GLU A 188 -159.69 -124.88 REMARK 500 8 GLU A 135 -42.01 173.23 REMARK 500 8 ASP A 142 154.53 55.45 REMARK 500 8 PHE A 143 -85.18 -144.18 REMARK 500 8 ASN A 144 -14.06 149.33 REMARK 500 8 ASN A 146 -31.72 171.17 REMARK 500 8 ASP A 147 161.65 81.22 REMARK 500 8 GLU A 148 -4.13 70.43 REMARK 500 8 GLU A 149 35.20 157.24 REMARK 500 8 ASP A 150 117.11 -161.46 REMARK 500 8 LYS A 155 34.25 -85.79 REMARK 500 8 GLU A 166 -160.68 -118.15 REMARK 500 8 PRO A 185 -71.36 -74.99 REMARK 500 8 TYR A 186 -27.45 -38.43 REMARK 500 8 TYR A 190 147.66 78.09 REMARK 500 9 LEU A 140 33.53 -95.75 REMARK 500 9 ASP A 142 165.49 49.89 REMARK 500 9 PHE A 143 -50.77 -153.32 REMARK 500 9 ASN A 144 90.20 29.27 REMARK 500 9 ASN A 146 -8.85 150.35 REMARK 500 9 GLU A 149 -29.81 179.85 REMARK 500 9 GLU A 166 -168.21 -101.18 REMARK 500 9 TYR A 186 40.33 -80.65 REMARK 500 10 GLU A 135 -39.78 171.89 REMARK 500 10 ASP A 142 159.32 55.79 REMARK 500 10 PHE A 143 -55.25 -164.05 REMARK 500 10 ASN A 144 93.02 58.91 REMARK 500 10 ASN A 146 -17.90 152.29 REMARK 500 10 ASP A 147 171.99 87.27 REMARK 500 10 GLU A 149 -32.84 -178.05 REMARK 500 10 LYS A 155 91.01 46.75 REMARK 500 10 ASP A 157 168.45 -43.78 REMARK 500 11 GLU A 135 -40.01 172.39 REMARK 500 11 ASP A 142 166.59 51.35 REMARK 500 11 PHE A 143 -53.64 -162.03 REMARK 500 11 ASN A 144 -84.60 48.48 REMARK 500 11 ASN A 146 -16.92 156.08 REMARK 500 11 ASP A 147 37.11 70.24 REMARK 500 11 GLU A 149 32.31 176.44 REMARK 500 11 LYS A 155 42.82 -83.08 REMARK 500 11 GLU A 166 -100.57 -123.47 REMARK 500 11 GLU A 167 -67.49 -150.74 REMARK 500 11 TYR A 186 -18.45 -44.14 REMARK 500 12 GLU A 135 -155.48 -116.61 REMARK 500 12 ASP A 142 159.51 53.59 REMARK 500 12 PHE A 143 -50.01 -165.52 REMARK 500 12 ASN A 144 93.06 30.42 REMARK 500 12 ASN A 146 -20.50 154.79 REMARK 500 12 ASP A 147 43.02 77.88 REMARK 500 12 GLU A 149 -23.91 166.38 REMARK 500 12 LYS A 155 137.91 88.28 REMARK 500 12 LYS A 164 85.71 -154.66 REMARK 500 12 GLU A 188 -158.36 -125.26 REMARK 500 12 TYR A 190 -57.74 69.06 REMARK 500 13 GLU A 135 -159.04 -148.64 REMARK 500 13 ASP A 142 156.90 54.19 REMARK 500 13 PHE A 143 -94.39 -163.83 REMARK 500 13 ASN A 144 2.35 145.29 REMARK 500 13 ASN A 146 -25.47 170.42 REMARK 500 13 ASP A 147 167.92 82.23 REMARK 500 13 GLU A 149 -25.24 164.31 REMARK 500 13 TYR A 186 -35.75 -31.55 REMARK 500 14 GLU A 135 -37.09 177.12 REMARK 500 14 ASP A 142 166.89 51.60 REMARK 500 14 PHE A 143 -38.47 -167.93 REMARK 500 14 ASN A 144 -80.89 2.73 REMARK 500 14 ASN A 146 -24.47 -149.95 REMARK 500 14 GLU A 149 -31.32 179.79 REMARK 500 14 LYS A 155 94.55 -64.44 REMARK 500 14 GLU A 166 -105.76 -102.86 REMARK 500 14 GLU A 167 -46.55 -158.37 REMARK 500 14 PRO A 185 -70.64 -75.00 REMARK 500 14 TYR A 186 -35.55 -32.30 REMARK 500 14 GLU A 188 -157.78 -126.61 REMARK 500 14 TYR A 190 -99.39 -107.89 REMARK 500 15 GLU A 135 -137.18 -178.80 REMARK 500 15 LEU A 140 36.27 -98.38 REMARK 500 15 PHE A 141 -11.61 -140.20 REMARK 500 15 ASP A 142 158.11 52.38 REMARK 500 15 PHE A 143 -49.12 -157.88 REMARK 500 15 ASN A 144 90.15 23.83 REMARK 500 15 ASN A 146 -24.11 160.20 REMARK 500 15 ASP A 147 34.28 79.70 REMARK 500 15 GLU A 149 -27.26 168.05 REMARK 500 15 LYS A 164 111.97 -162.62 REMARK 500 15 GLU A 166 -121.85 -96.00 REMARK 500 15 GLU A 167 -46.46 -149.01 REMARK 500 15 TYR A 190 -37.77 81.43 REMARK 500 16 GLU A 135 -163.23 -115.70 REMARK 500 16 ASP A 142 159.60 54.31 REMARK 500 16 PHE A 143 -38.46 -164.82 REMARK 500 16 ASN A 144 89.15 -29.90 REMARK 500 16 ASN A 146 -35.67 -153.73 REMARK 500 16 GLU A 149 34.97 -178.96 REMARK 500 16 GLU A 188 -162.83 -119.56 REMARK 500 16 TYR A 190 -67.61 77.67 REMARK 500 17 GLU A 135 -156.10 -136.69 REMARK 500 17 ASP A 142 152.82 57.88 REMARK 500 17 PHE A 143 -53.05 -153.00 REMARK 500 17 ASN A 144 90.41 22.05 REMARK 500 17 ASN A 146 -31.38 169.25 REMARK 500 17 ASP A 147 38.78 87.48 REMARK 500 17 GLU A 149 -26.47 166.30 REMARK 500 17 LYS A 154 146.60 170.73 REMARK 500 17 LYS A 155 68.33 78.23 REMARK 500 17 PRO A 165 -73.24 -75.05 REMARK 500 17 GLU A 166 -99.74 -98.76 REMARK 500 17 GLU A 167 -50.33 -161.13 REMARK 500 17 GLU A 188 -164.32 -113.77 REMARK 500 18 GLU A 135 -45.00 169.62 REMARK 500 18 ASP A 142 161.44 53.91 REMARK 500 18 PHE A 143 -79.84 -136.12 REMARK 500 18 ASN A 144 138.73 145.87 REMARK 500 18 ASN A 146 -44.11 -161.57 REMARK 500 18 ASP A 147 -173.01 44.46 REMARK 500 18 GLU A 149 -46.96 -160.99 REMARK 500 18 PHE A 153 179.60 179.11 REMARK 500 18 GLU A 167 -71.48 -93.07 REMARK 500 18 GLU A 188 -158.60 -124.27 REMARK 500 19 GLU A 135 -41.51 171.86 REMARK 500 19 ASP A 142 155.98 53.83 REMARK 500 19 PHE A 143 -47.57 -162.92 REMARK 500 19 ASN A 144 90.35 19.08 REMARK 500 19 ASN A 146 -18.32 153.03 REMARK 500 19 ASP A 147 38.49 76.59 REMARK 500 19 GLU A 149 -23.93 174.92 REMARK 500 19 LYS A 155 34.39 -85.12 REMARK 500 19 TYR A 190 155.96 82.08 REMARK 500 20 GLU A 135 -164.38 -128.49 REMARK 500 20 ASP A 142 145.22 57.97 REMARK 500 20 PHE A 143 -61.44 -156.87 REMARK 500 20 ASN A 144 -68.14 69.04 REMARK 500 20 ASN A 146 -6.32 152.67 REMARK 500 20 GLU A 149 -28.62 177.69 REMARK 500 20 LYS A 154 158.90 174.31 REMARK 500 20 PRO A 185 -75.01 -75.04 REMARK 500 20 TYR A 186 -33.88 -32.57 REMARK 500 20 TYR A 190 136.90 82.60 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M3A RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE TRUNCATED N- REMARK 900 TERMINAL SH3 DOMAIN FROM ONCOGENE PROTEIN C-CRK. REMARK 900 RELATED ID: 1M3B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE N-TERMINAL SH3 REMARK 900 DOMAIN (A134C,E135G MUTANT) FROM ONCOGENE PROTEIN C-CRK. REMARK 900 RELATED ID: 1M3C RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE N-TERMINAL SH3 REMARK 900 DOMAIN FROM ONCOGENE PROTEIN C-CRK

DBREF 1M30 A 134 191 UNP Q64010 CRK_MOUSE 134 191

SEQADV 1M30 GLY A 191 UNP Q64010 ARG 191 ENGINEERED

SEQRES 1 A 58 ALA GLU TYR VAL ARG ALA LEU PHE ASP PHE ASN GLY ASN SEQRES 2 A 58 ASP GLU GLU ASP LEU PRO PHE LYS LYS GLY ASP ILE LEU SEQRES 3 A 58 ARG ILE ARG ASP LYS PRO GLU GLU GLN TRP TRP ASN ALA SEQRES 4 A 58 GLU ASP SER GLU GLY LYS ARG GLY MET ILE PRO VAL PRO SEQRES 5 A 58 TYR VAL GLU LYS TYR GLY

SHEET 1 A 5 ARG A 179 PRO A 183 0 SHEET 2 A 5 TRP A 169 ASP A 174 -1 N TRP A 170 O ILE A 182 SHEET 3 A 5 ASP A 157 ASP A 163 -1 N ARG A 160 O GLU A 173 SHEET 4 A 5 VAL A 137 ALA A 139 -1 N VAL A 137 O LEU A 159 SHEET 5 A 5 VAL A 187 LYS A 189 -1 O GLU A 188 N ARG A 138

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000