10 20 30 40 50 60 70 80 1M0X - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRUS/VIRAL PROTEIN 15-JUN-02 1M0X
TITLE VP6 PROTEIN OF BOVINE ROTAVIRUS (STRAIN UK)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAJOR CAPSID PROTEIN, MAJOR INTERNAL STRUCTURAL COMPND 5 PROTEIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE ROTAVIRUS (STRAIN UK); SOURCE 3 ORGANISM_COMMON: VIRUS
KEYWDS COAT PROTEIN
EXPDTA THEORETICAL MODEL
AUTHOR A.DASH
REVDAT 1 26-JUN-02 1M0X 0
JRNL AUTH A.DASH JRNL TITL VP6 PROTEIN OF BOVINE ROTAVIRUS (STRAIN UK) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE QUERY SEQUENCE IS FROM SWISSPROT REMARK 3 DATABASE. IT WAS BLASTED AGAINST PDB. THE REFERENCE PROTEIN REMARK 3 WAS TAKEN WITH HIGH IDENTITY AND LOW RESOLUTION AND THEN REMARK 3 MULTIPLE ALIGNED IN CLUSTALW. THEN THE REFERENCE AND QUERY REMARK 3 SEQUENCE WERE ALIGNED IN INSIGHTII ACCORDING TO CLUSTALW. REMARK 3 COORDINATES ARE ASSIGNED TO QUERY SEQUENCE FROM REFERENCE REMARK 3 PROTEIN SEQUENCE. THEN THE JOB WAS SUBMITTED TO MODELLER, REMARK 3 WHICH DOES AUTOMATIC REFINEMENT USING CONJUGATE GRADIENT AND REMARK 3 MOLECULAR DYNAMICS SIMULATION.
REMARK 4 REMARK 4 1M0X COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016460.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 337 CB - CA - C ANGL. DEV. =-15.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 228 141.70 82.93
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QHD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VP6, THE MAJOR CAPSID PROTEIN OF GROUP REMARK 900 A ROTAVIRUS
DBREF 1M0X A 1 397 UNP P18610 VS06_ROTBU 1 397
SEQRES 1 A 397 MET ASP VAL LEU TYR SER LEU SER LYS THR LEU LYS ASP SEQRES 2 A 397 ALA ARG ASP LYS ILE VAL GLU GLY THR LEU TYR SER ASN SEQRES 3 A 397 VAL SER ASP LEU ILE GLN GLN PHE ASN GLN MET ILE ILE SEQRES 4 A 397 THR MET ASN GLY ASN GLU PHE GLN THR GLY GLY ILE GLY SEQRES 5 A 397 ASN LEU PRO ILE ARG ASN TRP ASN PHE ASP PHE GLY LEU SEQRES 6 A 397 LEU GLY THR THR LEU LEU ASN LEU ASP ALA ASN TYR VAL SEQRES 7 A 397 GLU THR ALA ARG ASN THR ILE ASP TYR PHE VAL ASP PHE SEQRES 8 A 397 VAL ASP ASN VAL CYS MET ASP GLU MET VAL ARG GLU SER SEQRES 9 A 397 GLN ARG ASN GLY ILE ALA PRO GLN SER ASP SER LEU ARG SEQRES 10 A 397 LYS LEU SER GLY ILE LYS PHE LYS ARG ILE ASN PHE ASP SEQRES 11 A 397 ASN SER SER GLU TYR ILE GLU ASN TRP ASN LEU GLN ASN SEQRES 12 A 397 ARG ARG GLN ARG THR GLY PHE THR PHE HIS LYS PRO ASN SEQRES 13 A 397 ILE PHE PRO TYR SER ALA SER PHE THR LEU ASN ARG SER SEQRES 14 A 397 GLN PRO ALA HIS ASP ASN LEU MET GLY THR MET TRP LEU SEQRES 15 A 397 ASN ALA GLY SER GLU ILE GLN VAL ALA GLY PHE ASP TYR SEQRES 16 A 397 SER CYS ALA ILE ASN ALA PRO ALA ASN THR GLN GLN PHE SEQRES 17 A 397 GLU HIS ILE VAL GLN LEU ARG ARG VAL LEU THR THR ALA SEQRES 18 A 397 THR ILE THR LEU LEU PRO ASP ALA GLU ARG PHE SER PHE SEQRES 19 A 397 PRO ARG VAL ILE ASN SER ALA ASP GLY ALA THR THR TRP SEQRES 20 A 397 TYR PHE ASN PRO VAL ILE LEU ARG PRO ASN ASN VAL GLU SEQRES 21 A 397 VAL GLU PHE LEU LEU ASN GLY GLN ILE ILE ASN THR TYR SEQRES 22 A 397 GLN ALA ARG PHE GLY THR ILE ILE ALA ARG ASN PHE ASP SEQRES 23 A 397 THR ILE ARG LEU SER PHE GLN LEU MET ARG PRO PRO ASN SEQRES 24 A 397 MET THR PRO ALA VAL ALA ALA LEU PHE PRO ASN ALA GLN SEQRES 25 A 397 PRO PHE GLU HIS GLN ALA THR VAL GLY LEU THR LEU ARG SEQRES 26 A 397 ILE GLU SER ALA VAL CYS GLU SER VAL LEU ALA ASP ALA SEQRES 27 A 397 SER GLU THR MET LEU ALA ASN VAL THR SER VAL ARG GLN SEQRES 28 A 397 GLU TYR ALA ILE PRO VAL GLY PRO VAL PHE PRO PRO GLY SEQRES 29 A 397 MET ASN TRP THR ASP LEU ILE THR ASN TYR SER PRO SER SEQRES 30 A 397 ARG GLU ASP ASN LEU GLN ARG VAL PHE THR VAL ALA SER SEQRES 31 A 397 ILE ARG SER MET LEU VAL LYS
HELIX 1 1 MET A 1 ILE A 18 1 18 HELIX 2 2 LEU A 23 ASN A 42 1 20 HELIX 3 3 ASP A 74 VAL A 101 1 28 HELIX 4 4 SER A 113 SER A 120 1 8 HELIX 5 5 GLY A 121 ASN A 128 5 8 HELIX 6 6 SER A 133 ARG A 144 1 12 HELIX 7 7 ALA A 201 ALA A 203 5 3 HELIX 8 8 ALA A 229 SER A 233 5 5 HELIX 9 9 THR A 301 PHE A 308 1 8 HELIX 10 10 THR A 341 ALA A 354 1 14 HELIX 11 11 PRO A 362 MET A 365 5 4 HELIX 12 12 ASN A 366 ASN A 373 1 8 HELIX 13 13 SER A 375 VAL A 396 1 22
SHEET 1 A 2 GLU A 45 THR A 48 0 SHEET 2 A 2 ARG A 57 ASN A 60 -1 O ARG A 57 N THR A 48 SHEET 1 B12 PHE A 158 ARG A 168 0 SHEET 2 B12 MET A 177 GLY A 185 -1 O MET A 177 N ARG A 168 SHEET 3 B12 GLU A 187 ASP A 194 -1 N GLU A 187 O ALA A 184 SHEET 4 B12 GLN A 317 CYS A 331 -1 O ALA A 318 N ASP A 194 SHEET 5 B12 PRO A 251 ILE A 253 1 O VAL A 252 N THR A 319 SHEET 6 B12 GLN A 317 CYS A 331 1 O GLN A 317 N VAL A 252 SHEET 7 B12 PHE A 150 HIS A 153 -1 N PHE A 150 O CYS A 331 SHEET 8 B12 GLN A 317 CYS A 331 -1 O ALA A 329 N PHE A 152 SHEET 9 B12 THR A 205 PRO A 227 -1 O THR A 219 N VAL A 330 SHEET 10 B12 GLY A 278 MET A 295 -1 N GLY A 278 O LEU A 225 SHEET 11 B12 ASN A 257 LEU A 265 -1 N ASN A 257 O GLN A 293 SHEET 12 B12 GLN A 268 GLN A 274 -1 O GLN A 268 N LEU A 265 SHEET 1 C 2 ARG A 236 ASN A 239 0 SHEET 2 C 2 THR A 246 PHE A 249 -1 N TRP A 247 O ILE A 238
CISPEP 1 GLN A 312 PRO A 313 0 1.44
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000