10 20 30 40 50 60 70 80 1M0J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 13-JUN-02 1M0J
TITLE SOLUTION STRUCTURE OF THE BETA DOMAIN OF MT_NC
COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLOTHIONEIN MT_NC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BETA DOMAIN; COMPND 5 SYNONYM: METALLOTHIONEIN A; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOTOTHENIA CORIICEPS; SOURCE 3 ORGANISM_COMMON: YELLOWBELLY ROCKCOD; SOURCE 4 ORGANISM_TAXID: 8208; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEM-MT
KEYWDS CADMIUM THIOLATE-CLUSTER, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.CAPASSO,V.CARGINALE,O.CRESCENZI,D.DI MARO,E.PARISI, AUTHOR 2 R.SPADACCINI,P.A.TEMUSSI
REVDAT 2 24-FEB-09 1M0J 1 VERSN REVDAT 1 06-MAY-03 1M0J 0
JRNL AUTH C.CAPASSO,V.CARGINALE,O.CRESCENZI,D.DI MARO, JRNL AUTH 2 E.PARISI,R.SPADACCINI,P.A.TEMUSSI JRNL TITL SOLUTION STRUCTURE OF MT_NC, A NOVEL JRNL TITL 2 METALLOTHIONEIN FROM THE ANTARCTIC FISH NOTOTHENIA JRNL TITL 3 CORIICEPS. JRNL REF STRUCTURE V. 11 435 2003 JRNL REFN ISSN 0969-2126 JRNL PMID 12679021 JRNL DOI 10.1016/S0969-2126(03)00044-3
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 253 NOES, 12 CD-S BONDS AND 63 DIHEDRAL ANGLE CONSTRAINTS
REMARK 4 REMARK 4 1M0J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-02. REMARK 100 THE RCSB ID CODE IS RCSB016446.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM METALLOTHIONEIN; 95% H2O, REMARK 210 5% D2O; METALLOTHIONEIN, U- REMARK 210 113CD; 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, E-COSY, REMARK 210 DQF-COSY, [113CD,1H]COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 4.0.3, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 14 -73.74 -64.38 REMARK 500 1 ASN A 19 54.41 -146.69 REMARK 500 1 THR A 25 -41.75 -132.91 REMARK 500 1 SER A 30 45.74 -170.45 REMARK 500 1 CYS A 34 -48.34 -144.28 REMARK 500 2 LYS A 14 -59.22 72.01 REMARK 500 2 SER A 15 -34.68 -38.70 REMARK 500 2 ASN A 19 52.45 -144.20 REMARK 500 2 CYS A 20 33.17 -88.12 REMARK 500 2 ASN A 28 67.63 -117.62 REMARK 500 2 SER A 30 53.29 -167.98 REMARK 500 2 CYS A 34 -49.18 -130.45 REMARK 500 3 LYS A 14 -54.98 85.24 REMARK 500 3 SER A 15 -31.62 -38.14 REMARK 500 3 ASN A 19 52.95 -146.19 REMARK 500 3 SER A 30 68.75 -175.15 REMARK 500 3 CYS A 31 -73.27 -121.11 REMARK 500 3 LYS A 32 137.12 -178.51 REMARK 500 3 SER A 33 9.31 81.09 REMARK 500 4 CYS A 12 -71.20 -67.77 REMARK 500 4 THR A 17 138.15 -178.92 REMARK 500 4 ASN A 19 52.40 -142.50 REMARK 500 4 SER A 23 94.85 -176.37 REMARK 500 4 SER A 30 49.79 -165.43 REMARK 500 4 CYS A 31 -91.75 -89.62 REMARK 500 4 LYS A 32 139.59 -178.99 REMARK 500 5 CYS A 12 -72.47 -70.75 REMARK 500 5 THR A 17 126.38 179.40 REMARK 500 5 SER A 30 34.51 -157.78 REMARK 500 5 CYS A 31 -90.02 -78.10 REMARK 500 6 CYS A 10 141.59 63.25 REMARK 500 6 LYS A 14 -91.91 -73.43 REMARK 500 6 CYS A 20 42.60 -107.53 REMARK 500 6 SER A 30 -27.90 -176.69 REMARK 500 6 CYS A 31 134.54 -35.90 REMARK 500 6 CYS A 34 -63.43 -108.69 REMARK 500 7 CYS A 18 100.03 -47.39 REMARK 500 7 THR A 25 -41.68 -161.47 REMARK 500 7 SER A 30 34.22 -175.04 REMARK 500 7 CYS A 31 -98.79 -68.95 REMARK 500 7 LYS A 32 -30.79 166.33 REMARK 500 7 CYS A 34 -51.62 -133.89 REMARK 500 8 CYS A 10 164.61 56.94 REMARK 500 8 CYS A 12 -75.74 -91.05 REMARK 500 8 LYS A 14 -43.31 -29.03 REMARK 500 8 SER A 15 -31.90 -36.37 REMARK 500 8 THR A 17 137.47 82.96 REMARK 500 8 CYS A 18 154.28 -41.08 REMARK 500 8 ASN A 19 57.01 -147.19 REMARK 500 8 CYS A 20 31.78 -87.12 REMARK 500 8 ASN A 28 73.60 56.07 REMARK 500 8 SER A 30 63.53 -176.05 REMARK 500 8 CYS A 34 -48.69 -144.24 REMARK 500 9 GLU A 11 -31.90 -36.88 REMARK 500 9 LYS A 14 -70.77 -120.20 REMARK 500 9 THR A 17 148.90 73.54 REMARK 500 9 ASN A 19 54.60 -146.66 REMARK 500 9 CYS A 20 33.38 -95.88 REMARK 500 9 ASN A 28 62.60 39.58 REMARK 500 9 SER A 30 33.92 -174.40 REMARK 500 9 CYS A 31 -76.62 -75.64 REMARK 500 9 LYS A 32 146.38 160.45 REMARK 500 10 CYS A 12 -72.00 -74.70 REMARK 500 10 LYS A 14 -48.73 79.77 REMARK 500 10 THR A 17 149.53 77.75 REMARK 500 10 ASN A 19 59.03 -154.47 REMARK 500 10 CYS A 20 32.15 -94.30 REMARK 500 10 CYS A 26 171.54 -52.71 REMARK 500 10 SER A 30 60.45 -172.73 REMARK 500 10 CYS A 31 -94.88 -94.43 REMARK 500 10 LYS A 32 -37.70 -176.35 REMARK 500 11 GLU A 11 49.42 -88.71 REMARK 500 11 THR A 25 -41.21 -135.84 REMARK 500 11 CYS A 26 150.95 -49.01 REMARK 500 11 SER A 30 31.16 -165.48 REMARK 500 12 CYS A 18 91.21 -63.45 REMARK 500 12 SER A 30 37.55 -164.25 REMARK 500 12 CYS A 31 -150.44 -118.87 REMARK 500 12 LYS A 32 -158.80 -124.16 REMARK 500 12 SER A 33 22.05 47.84 REMARK 500 12 CYS A 34 -47.17 -157.17 REMARK 500 13 CYS A 10 162.33 58.75 REMARK 500 13 GLU A 11 59.43 -94.79 REMARK 500 13 LYS A 14 -58.47 71.39 REMARK 500 13 CYS A 18 108.46 -47.68 REMARK 500 13 SER A 23 94.38 -61.24 REMARK 500 13 ASN A 28 70.23 46.49 REMARK 500 13 SER A 30 58.03 -165.96 REMARK 500 13 CYS A 34 -47.99 -148.52 REMARK 500 14 CYS A 10 152.30 65.65 REMARK 500 14 GLU A 11 44.19 -89.50 REMARK 500 14 CYS A 12 -77.05 -69.58 REMARK 500 14 LYS A 14 -55.67 79.37 REMARK 500 14 ASN A 19 53.31 -142.40 REMARK 500 14 CYS A 20 31.37 -85.63 REMARK 500 14 LYS A 32 -153.66 -104.02 REMARK 500 14 SER A 33 15.58 57.19 REMARK 500 14 CYS A 34 -52.80 -161.88 REMARK 500 15 THR A 17 143.70 60.47 REMARK 500 15 CYS A 20 31.84 -87.40 REMARK 500 15 SER A 23 87.79 -163.45 REMARK 500 15 ASN A 28 54.73 33.40 REMARK 500 15 SER A 30 34.65 -176.52 REMARK 500 15 LYS A 32 140.70 171.08 REMARK 500 15 CYS A 34 -55.67 -130.52 REMARK 500 16 SER A 13 -30.43 164.50 REMARK 500 16 LYS A 14 -57.61 72.14 REMARK 500 16 ASN A 28 47.27 -88.66 REMARK 500 16 SER A 30 53.95 -174.13 REMARK 500 16 CYS A 31 -73.31 -103.22 REMARK 500 16 LYS A 32 137.29 -179.23 REMARK 500 17 GLU A 11 76.37 -67.66 REMARK 500 17 CYS A 12 -71.39 -73.17 REMARK 500 17 LYS A 14 -55.17 84.41 REMARK 500 17 ASN A 19 59.60 -152.93 REMARK 500 17 SER A 23 162.22 67.86 REMARK 500 17 ASN A 28 31.89 39.06 REMARK 500 17 SER A 30 63.22 -169.72 REMARK 500 17 CYS A 31 -87.37 -105.28 REMARK 500 17 LYS A 32 139.89 -176.20 REMARK 500 17 CYS A 34 -48.63 -130.50 REMARK 500 18 CYS A 10 143.40 83.19 REMARK 500 18 LYS A 14 -74.16 -66.17 REMARK 500 18 CYS A 18 103.86 -50.60 REMARK 500 18 SER A 23 86.37 -58.33 REMARK 500 18 THR A 25 -42.33 -136.96 REMARK 500 18 CYS A 26 165.54 -49.75 REMARK 500 18 ASN A 28 76.54 43.59 REMARK 500 18 SER A 30 17.42 -145.83 REMARK 500 18 CYS A 34 -48.07 -142.81 REMARK 500 19 CYS A 12 -81.15 -92.13 REMARK 500 19 SER A 15 -30.55 -38.04 REMARK 500 19 THR A 17 117.12 66.47 REMARK 500 19 CYS A 18 157.61 -40.05 REMARK 500 19 ASN A 19 58.83 -149.23 REMARK 500 19 CYS A 20 31.27 -84.93 REMARK 500 19 SER A 30 79.24 -174.83 REMARK 500 19 CYS A 34 -46.46 -144.78 REMARK 500 20 LYS A 14 -89.68 -58.18 REMARK 500 20 SER A 23 106.66 -163.29 REMARK 500 20 SER A 30 29.15 -165.21 REMARK 500 20 CYS A 34 -49.09 -140.49 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CD A 101 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 12 SG 105.4 REMARK 620 3 CYS A 18 SG 120.8 109.9 REMARK 620 4 CYS A 20 SG 119.1 97.6 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CD A 102 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 CYS A 24 SG 112.7 REMARK 620 3 CYS A 34 SG 99.3 116.2 REMARK 620 4 CYS A 20 SG 100.0 115.9 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CD A 103 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 26 SG 106.4 REMARK 620 3 CYS A 12 SG 131.0 106.9 REMARK 620 4 CYS A 29 SG 105.4 97.7 104.6 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 101 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 102 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 103
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M0G RELATED DB: PDB REMARK 900 1M0G CONTAINS ALPHA DOMAIN OF THE SAME PROTEIN
DBREF 1M0J A 8 35 UNP P62339 MTA_NOTCO 2 29
SEQRES 1 A 28 ASP PRO CYS GLU CYS SER LYS SER GLY THR CYS ASN CYS SEQRES 2 A 28 GLY GLY SER CYS THR CYS THR ASN CYS SER CYS LYS SER SEQRES 3 A 28 CYS LYS
HET CD A 101 1 HET CD A 102 1 HET CD A 103 1
HETNAM CD CADMIUM ION
FORMUL 2 CD 3(CD 2+)
HELIX 1 1 CYS A 10 GLY A 16 1 7
LINK CD CD A 101 SG CYS A 31 1555 1555 2.30 LINK CD CD A 101 SG CYS A 12 1555 1555 2.60 LINK CD CD A 101 SG CYS A 18 1555 1555 2.54 LINK CD CD A 101 SG CYS A 20 1555 1555 2.58 LINK CD CD A 102 SG CYS A 29 1555 1555 2.60 LINK CD CD A 102 SG CYS A 24 1555 1555 2.29 LINK CD CD A 102 SG CYS A 34 1555 1555 2.52 LINK CD CD A 102 SG CYS A 20 1555 1555 2.60 LINK CD CD A 103 SG CYS A 10 1555 1555 2.30 LINK CD CD A 103 SG CYS A 26 1555 1555 2.57 LINK CD CD A 103 SG CYS A 12 1555 1555 2.32 LINK CD CD A 103 SG CYS A 29 1555 1555 2.60
SITE 1 AC1 4 CYS A 12 CYS A 18 CYS A 20 CYS A 31 SITE 1 AC2 4 CYS A 20 CYS A 24 CYS A 29 CYS A 34 SITE 1 AC3 4 CYS A 10 CYS A 12 CYS A 26 CYS A 29
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000