1M0C - Header Asymmetric Unit

HEADER VIRUS/VIRAL PROTEIN 12-JUN-02 1M0C

TITLE RETROVIRUS-RELATED POL POLYPROTEIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETROVIRUS-RELATED POL POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.49

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN

KEYWDS HYDROLASE, TRANSFERASE, RNA-DIRECTED DNA POLYMERASE, KEYWDS 2 NUCLEASE, ENDONUCLEASE, POLYPROTEIN

EXPDTA THEORETICAL MODEL

AUTHOR A.DASH,K.BEESETTI

REVDAT 1 26-JUN-02 1M0C 0

JRNL AUTH A.DASH,K.BEESETTI JRNL TITL RETROVIRUS-RELATED POL POLYPROTEIN JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE QUERY SEQUENCE WAS TAKEN FROM REMARK 3 SWISSPROT AND BLASTED AGAINST PDB. TWO REFERENCE SEQUENCES ARE REMARK 3 TAKEN WITH HIGH IDENTITY, LOW RESOLUTION. MULTIPLE ALIGNMENT REMARK 3 WAS DONE USING CLUSTALW. THE SEQUENCES WERE ALIGNED ACCORDING REMARK 3 TO CLUSTALW. THEN QUERY SEQUENCE WAS GIVEN TO MODELLER. IT REMARK 3 DOES AUTOMATIC REFINEMENT USING CONJUGATE GRADIENT AND REMARK 3 MOLECULAR DYNAMIC SIMULATION.

REMARK 4 REMARK 4 1M0C COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016439.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 167.15 95.14 REMARK 500 LEU A 83 -179.77 143.68 REMARK 500 PHE A 134 -152.77 117.11

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A5W RELATED DB: PDB REMARK 900 ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3 REMARK 900 RELATED ID: 1A5X RELATED DB: PDB REMARK 900 ASV INTEGRASE CORE DOMAIN WITH HIV-1 INTEGRASE INHIBITOR Y3

DBREF 1M0C A 1 246 PIR A25779 A25779 1 246

SEQRES 1 A 246 SER ALA GLN PRO VAL ARG ALA PHE THR PRO TRP VAL GLU SEQRES 2 A 246 LEU LEU SER LEU LEU LEU SER LYS ALA ARG THR SER ALA SEQRES 3 A 246 PHE ARG ASP PHE GLY LYS ASP LEU ASP ILE VAL HIS LEU SEQRES 4 A 246 PRO ARG PHE PHE ARG ASP SER GLN ILE LEU PRO ASP GLU SEQRES 5 A 246 ILE LEU LEU ALA LEU HIS GLY PHE GLY GLY LYS LEU ARG SEQRES 6 A 246 TYR ALA GLY SER LEU PRO ILE PHE GLU LEU ALA ARG PRO SEQRES 7 A 246 LEU ARG VAL SER LEU ARG LEU ARG VAL VAL ALA SER PRO SEQRES 8 A 246 LEU ASP GLY PRO THR VAL PHE THR ASP ALA SER SER SER SEQRES 9 A 246 THR GLY GLN GLY ALA VAL VAL LEU THR ALA ARG THR ALA SEQRES 10 A 246 PRO ALA ALA VAL LEU HIS VAL ARG SER HIS SER ASP VAL SEQRES 11 A 246 PRO GLY PHE PHE THR THR GLY ASN ALA LEU ALA ASP GLN SEQRES 12 A 246 HIS ALA GLY HIS LYS VAL LEU THR VAL ARG GLU ALA ASP SEQRES 13 A 246 LEU HIS SER THR LEU HIS LEU GLY ALA ARG ALA LEU SER SEQRES 14 A 246 ARG THR CYS SER ILE PRO MET ALA VAL ALA ARG GLU VAL SEQRES 15 A 246 VAL GLN ALA CYS PRO HIS CYS ASN SER ALA PRO ALA LEU SEQRES 16 A 246 SER ALA GLY VAL ASN PRO ARG GLY ILE ALA PRO LEU ASP SEQRES 17 A 246 VAL TRP GLN THR ASP PHE THR LEU GLU PRO ARG LEU ALA SEQRES 18 A 246 PRO ARG SER TRP LEU ALA VAL THR VAL ASP THR ALA SER SEQRES 19 A 246 THR VAL ILE VAL ALA THR GLN HIS GLY ARG ALA ASN

HELIX 1 1 LEU A 34 VAL A 37 5 4 HELIX 2 2 GLY A 68 LEU A 83 1 16 HELIX 3 3 PRO A 95 ASP A 100 1 6 HELIX 4 4 ASP A 100 VAL A 111 1 12 HELIX 5 5 HIS A 147 SER A 169 1 23 HELIX 6 6 PRO A 175 CYS A 189 1 15

SHEET 1 A 5 ILE A 53 HIS A 58 0 SHEET 2 A 5 ARG A 41 GLN A 47 -1 N ARG A 41 O HIS A 58 SHEET 3 A 5 LEU A 19 LYS A 21 -1 N LYS A 21 O SER A 46 SHEET 4 A 5 VAL A 87 ALA A 89 1 O ALA A 89 N SER A 20 SHEET 5 A 5 THR A 113 ARG A 115 1 O ARG A 115 N VAL A 88 SHEET 1 B 3 ILE A 53 HIS A 58 0 SHEET 2 B 3 ARG A 41 GLN A 47 -1 N ARG A 41 O HIS A 58 SHEET 3 B 3 PHE A 30 LYS A 32 -1 N GLY A 31 O PHE A 42

CISPEP 1 VAL A 37 HIS A 38 0 3.13

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000