10 20 30 40 50 60 70 80 1M09 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 12-JUN-02 1M09
TITLE PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GART 2, GAR TRANSFORMYLASE 2, 5'- COMPND 5 PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE 2, FORMATE- COMPND 6 DEPENDENT GAR TRANSFORMYLASE, MEMBRANE PROTEIN ANTIGEN; COMPND 7 EC: 2.1.2.-
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PASTEURELLA HAEMOLYTICA; SOURCE 3 ORGANISM_COMMON: BACTERIA
KEYWDS PURINE BIOSYNTHESIS, TRANSFERASE, MAGNESIUM, INNER MEMBRANE, KEYWDS 2 ANTIGEN
EXPDTA THEORETICAL MODEL
AUTHOR M.G.JAYAPRIYA
REVDAT 1 03-JUL-02 1M09 0
JRNL AUTH M.G.JAYAPRIYA JRNL TITL PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEQUENCE WAS TAKEN FROM SWISSPROT REMARK 3 AND BLASTED AGAINST PDB. LOW RESOLUTION AND HIGH IDENTITY REMARK 3 PROTEIN TAKEN AS REFERENCE PROTEIN. THE THREE SEQUENCES GIVEN REMARK 3 TO CLUSTALW FOR MULTIPLE ALIGNMENT. THE SEQUENCES ARE ALIGNED REMARK 3 IN INSIGHT II ACCORDING TO CLUSTALW AND GIVEN TO MODELLER.
REMARK 4 REMARK 4 1M09 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016436.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 221 CA ARG A 221 C 0.178 REMARK 500 HIS A 222 N HIS A 222 CA 0.144 REMARK 500 ARG A 221 C HIS A 222 N 0.186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 32 CG - CD - OE1 ANGL. DEV. =-76.1 DEGREES REMARK 500 GLN A 32 CG - CD - NE2 ANGL. DEV. =-22.9 DEGREES REMARK 500 HIS A 222 N - CA - C ANGL. DEV. = 21.9 DEGREES REMARK 500 HIS A 222 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 ASN A 349 CB - CG - OD1 ANGL. DEV. =-76.6 DEGREES REMARK 500 ASN A 349 CB - CG - ND2 ANGL. DEV. =-22.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 222 150.61 124.59 REMARK 500 GLU A 313 143.77 68.68 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 311 PRO A 312 -149.68
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EYZ RELATED DB: PDB REMARK 900 STRUCTURE OF ESCHERICHIA COLI PURT-ENCODED GLYCINAMIDE REMARK 900 RIBONUCLEOTIDE TRANSFORMYLASE COMPLEXED WITH MG AND AMPPNP REMARK 900 RELATED ID: 1EZ1 RELATED DB: PDB REMARK 900 STRUCTURE OF ESCHERICHIA COLI PURT-ENCODED GLYCINAMIDE REMARK 900 RIBONUCLEOTIDE TRANSFORMYLASE COMPLEXED WITH MG, AMPPNP, REMARK 900 AND GAR
DBREF 1M09 A 1 392 UNP P46927 PURT_PASHA 1 392
SEQRES 1 A 392 MET THR THR ILE GLY THR PRO LEU ARG THR ASN ALA THR SEQRES 2 A 392 LYS VAL MET MET LEU GLY SER GLY GLU LEU GLY LYS GLU SEQRES 3 A 392 VAL VAL ILE GLU LEU GLN PRO LEU GLY VAL GLU VAL ILE SEQRES 4 A 392 ALA VAL ASP ARG TYR ASP ASN ALA PRO ALA GLN GLN VAL SEQRES 5 A 392 ALA HIS ARG ALA TYR THR ILE SER MET LEU ASP GLY ASN SEQRES 6 A 392 ALA LEU ARG ASP LEU VAL GLU LYS GLU LYS PRO ASP PHE SEQRES 7 A 392 ILE VAL PRO GLU VAL GLU ALA ILE ALA THR ALA THR LEU SEQRES 8 A 392 VAL GLU LEU GLU GLN GLU GLY TYR ASN VAL ILE PRO THR SEQRES 9 A 392 ALA LYS ALA THR GLN LEU THR MET ASN ARG GLU GLY ILE SEQRES 10 A 392 ARG ARG LEU ALA ALA GLU GLU LEU GLY LEU LYS THR SER SEQRES 11 A 392 PRO TYR ARG PHE VAL ASP ASN PHE GLU GLN PHE GLN GLN SEQRES 12 A 392 ALA ILE GLN GLU ILE GLY ILE PRO CYS VAL VAL LYS PRO SEQRES 13 A 392 ILE MET SER SER SER GLY HIS GLY GLN SER VAL ILE LYS SEQRES 14 A 392 SER GLU ALA ASP ILE GLN GLN ALA TRP ASP TYR SER GLN SEQRES 15 A 392 GLN GLY GLY ARG ALA GLY GLY GLY ARG VAL ILE VAL GLU SEQRES 16 A 392 GLY PHE ILE LYS PHE ASP TYR GLU ILE THR GLN LEU THR SEQRES 17 A 392 VAL ARG HIS ILE HIS GLY ILE VAL PHE SER SER HIS ARG SEQRES 18 A 392 HIS ILE GLN VAL ASP GLY ASP TYR ARG GLU SER TRP GLN SEQRES 19 A 392 PRO GLN GLN MET SER ASP ILE ALA LEU LYS LYS ALA GLN SEQRES 20 A 392 GLU THR ALA GLU LYS ILE THR SER ALA LEU GLY GLY ARG SEQRES 21 A 392 GLY ILE PHE GLY VAL GLU LEU PHE VAL CYS GLY ASP GLU SEQRES 22 A 392 ILE ILE PHE ASN GLU VAL SER PRO ARG PRO HIS ASP THR SEQRES 23 A 392 GLY ILE VAL THR MET ALA SER GLN GLU LEU SER GLN PHE SEQRES 24 A 392 ALA LEU HIS ALA ARG ALA ILE LEU GLY LEU PRO ILE PRO SEQRES 25 A 392 GLU ILE TYR ARG ILE SER PRO ALA ALA SER LYS ALA ILE SEQRES 26 A 392 VAL VAL GLU GLY LYS SER ASP ASN VAL ARG PHE GLY GLY SEQRES 27 A 392 VAL ASP LYS VAL LEU ALA GLU ILE GLY THR ASN ILE ARG SEQRES 28 A 392 LEU PHE GLY LYS GLY GLU VAL ASN GLY HIS ARG ARG LEU SEQRES 29 A 392 GLY VAL ILE LEU ALA ARG ASP GLU ASN THR VAL ARG ALA SEQRES 30 A 392 LEU GLU THR SER ARG ARG ALA TYR ASP LYS LEU ASP ILE SEQRES 31 A 392 GLN LEU
HELIX 1 1 GLY A 21 GLN A 32 1 12 HELIX 2 2 PRO A 33 GLY A 35 5 3 HELIX 3 3 ALA A 47 VAL A 52 1 6 HELIX 4 4 ASP A 63 LYS A 75 1 13 HELIX 5 5 ALA A 87 GLY A 98 1 12 HELIX 6 6 THR A 104 ASN A 113 1 10 HELIX 7 7 ASN A 113 GLU A 123 1 11 HELIX 8 8 ASN A 137 GLY A 149 1 13 HELIX 9 9 SER A 170 ALA A 172 5 3 HELIX 10 10 ASP A 173 GLY A 184 1 12 HELIX 11 11 SER A 239 GLY A 258 1 20 HELIX 12 12 HIS A 284 ILE A 288 5 5 HELIX 13 13 VAL A 289 GLN A 294 1 6 HELIX 14 14 SER A 297 GLY A 308 1 12 HELIX 15 15 GLY A 338 VAL A 342 5 5 HELIX 16 16 ASN A 373 LEU A 388 1 16
SHEET 1 A 5 ARG A 55 THR A 58 0 SHEET 2 A 5 GLU A 37 ASP A 42 1 N ALA A 40 O ARG A 55 SHEET 3 A 5 LYS A 14 LEU A 18 1 N VAL A 15 O GLU A 37 SHEET 4 A 5 PHE A 78 PRO A 81 1 O VAL A 80 N MET A 16 SHEET 5 A 5 ASN A 100 VAL A 101 1 O ASN A 100 N ILE A 79 SHEET 1 B 4 TYR A 132 VAL A 135 0 SHEET 2 B 4 VAL A 192 GLY A 196 -1 O VAL A 194 N ARG A 133 SHEET 3 B 4 CYS A 152 PRO A 156 -1 N LYS A 155 O ILE A 193 SHEET 4 B 4 SER A 166 ILE A 168 -1 O ILE A 168 N CYS A 152 SHEET 1 C 4 GLY A 214 PHE A 217 0 SHEET 2 C 4 TYR A 202 HIS A 211 -1 N HIS A 211 O GLY A 214 SHEET 3 C 4 GLY A 261 CYS A 270 -1 O PHE A 263 N THR A 208 SHEET 4 C 4 GLU A 273 SER A 280 -1 O ILE A 275 N PHE A 268 SHEET 1 D 5 ILE A 223 VAL A 225 0 SHEET 2 D 5 ASP A 228 GLN A 234 -1 O ASP A 228 N VAL A 225 SHEET 3 D 5 ALA A 320 ASP A 332 -1 O SER A 322 N SER A 232 SHEET 4 D 5 GLU A 357 ARG A 370 -1 O VAL A 358 N SER A 331 SHEET 5 D 5 ASN A 349 LEU A 352 -1 N ASN A 349 O LEU A 368 SHEET 1 E 2 ARG A 335 GLY A 337 0 SHEET 2 E 2 ASP A 389 GLN A 391 -1 O ASP A 389 N GLY A 337
CISPEP 1 ILE A 102 PRO A 103 0 -3.92 CISPEP 2 ILE A 150 PRO A 151 0 -1.93 CISPEP 3 ALA A 187 GLY A 188 0 0.18 CISPEP 4 GLN A 234 PRO A 235 0 -3.05
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000