10 20 30 40 50 60 70 80 1LXX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 06-JUN-02 1LXX
TITLE THEORETICAL MODEL OF THE CATALYTIC DOMAIN OF 3',5'-CYCLIC TITLE 2 PHOSPHODIESTERASE 8A
CAVEAT 1LXX CHIRALITY ERRORS AT CA CENTER OF LEU A 201 AND THR A 203.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3',5'-CYCLIC PHOSPHODIESTERASE 8A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-334; COMPND 5 SYNONYM: HIGH-AFFINITY CAMP-SPECIFIC AND IBMX-INSENSITIVE COMPND 6 3',5'-CYCLIC PHOSPHODIESTERASE 8A; COMPND 7 EC: 3.1.4.17
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN
KEYWDS HYDROLASE
EXPDTA THEORETICAL MODEL
AUTHOR S.SUNITATAJNE,S.RAMADEVI
REVDAT 2 20-NOV-02 1LXX 1 REMARK REVDAT 1 26-JUN-02 1LXX 0
JRNL AUTH S.SUNITATAJNE,S.RAMADEVI JRNL TITL THEORETICAL MODEL OF THE CATALYTIC DOMAIN OF JRNL TITL 2 3',5'-CYCLIC PHOSPHODIESTERASE 8A JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1LXX COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016393.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 N LEU A 201 N THR A 203 2.10 REMARK 500 N LEU A 201 CA THR A 203 2.12 REMARK 500 O PRO A 200 O ALA A 202 2.14 REMARK 500 OD2 ASP A 307 O LEU A 312 2.16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 201 N LEU A 201 CA 0.210 REMARK 500 LEU A 201 CA LEU A 201 CB -0.419 REMARK 500 LEU A 201 CA LEU A 201 C 0.263 REMARK 500 PRO A 200 C LEU A 201 N 0.224 REMARK 500 THR A 203 N THR A 203 CA 0.209 REMARK 500 THR A 203 CA THR A 203 CB -0.183 REMARK 500 THR A 203 CA THR A 203 C 0.208 REMARK 500 ALA A 202 C THR A 203 N 0.260 REMARK 500 PRO A 278 CA PRO A 278 CB -0.281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 201 CB - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 LEU A 201 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ALA A 202 CB - CA - C ANGL. DEV. =-34.9 DEGREES REMARK 500 ALA A 202 N - CA - CB ANGL. DEV. = 18.1 DEGREES REMARK 500 ALA A 202 N - CA - C ANGL. DEV. =-19.2 DEGREES REMARK 500 ALA A 202 CA - C - O ANGL. DEV. =-48.3 DEGREES REMARK 500 THR A 203 CA - CB - OG1 ANGL. DEV. =-30.4 DEGREES REMARK 500 THR A 203 N - CA - C ANGL. DEV. = 26.6 DEGREES REMARK 500 THR A 203 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 GLU A 205 CB - CG - CD ANGL. DEV. =-20.9 DEGREES REMARK 500 PRO A 278 CB - CA - C ANGL. DEV. =-29.5 DEGREES REMARK 500 PHE A 280 CB - CG - CD1 ANGL. DEV. = 21.2 DEGREES REMARK 500 PHE A 280 CG - CD1 - CE1 ANGL. DEV. = 18.5 DEGREES REMARK 500 ASP A 307 OD1 - CG - OD2 ANGL. DEV. = 22.2 DEGREES REMARK 500 ASP A 307 CB - CG - OD2 ANGL. DEV. =-29.6 DEGREES REMARK 500 LEU A 312 O - C - N ANGL. DEV. =-19.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 154 129.13 65.49 REMARK 500 ILE A 217 -21.60 127.20 REMARK 500 VAL A 279 -6.94 8.69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 200 LEU A 201 141.15 REMARK 500 ALA A 202 THR A 203 108.18 REMARK 500 PRO A 278 VAL A 279 98.56
DBREF 1LXX A 1 334 UNP O60658 CN8A_HUMAN 372 705
SEQRES 1 A 334 ILE ALA ARG ALA MET GLU ASN GLU GLU TYR TRP ASP PHE SEQRES 2 A 334 ASP ILE PHE GLU LEU GLU ALA ALA THR HIS ASN ARG PRO SEQRES 3 A 334 LEU ILE TYR LEU GLY LEU LYS MET PHE ALA ARG PHE GLY SEQRES 4 A 334 ILE CYS GLU PHE LEU HIS CYS SER GLU SER THR LEU ARG SEQRES 5 A 334 SER TRP LEU GLN ILE ILE GLU ALA ASN TYR HIS SER SER SEQRES 6 A 334 ASN PRO TYR HIS ASN SER THR HIS SER ALA ASP VAL LEU SEQRES 7 A 334 HIS ALA THR ALA TYR PHE LEU SER LYS GLU ARG ILE LYS SEQRES 8 A 334 GLU THR LEU ASP PRO ILE ASP GLU VAL ALA ALA LEU ILE SEQRES 9 A 334 ALA ALA THR ILE HIS ASP VAL ASP HIS PRO GLY ARG THR SEQRES 10 A 334 ASN SER PHE LEU CYS ASN ALA GLY SER GLU LEU ALA ILE SEQRES 11 A 334 LEU TYR ASN ASP THR ALA VAL LEU GLU SER HIS HIS ALA SEQRES 12 A 334 ALA LEU ALA PHE GLN LEU THR THR GLY ASP ASP LYS CYS SEQRES 13 A 334 ASN ILE PHE LYS ASN MET GLU ARG ASN ASP TYR ARG THR SEQRES 14 A 334 LEU ARG GLN GLY ILE ILE ASP MET VAL LEU ALA THR GLU SEQRES 15 A 334 MET THR LYS HIS PHE GLU HIS VAL ASN LYS PHE VAL ASN SEQRES 16 A 334 SER ILE ASN LYS PRO LEU ALA THR LEU GLU GLU ASN GLY SEQRES 17 A 334 GLU THR ASP LYS ASN GLN GLU VAL ILE ASN THR MET LEU SEQRES 18 A 334 ARG THR PRO GLU ASN ARG THR LEU ILE LYS ARG MET LEU SEQRES 19 A 334 ILE LYS CYS ALA ASP VAL SER ASN PRO CYS ARG PRO LEU SEQRES 20 A 334 GLN TYR CYS ILE GLU TRP ALA ALA ARG ILE SER GLU GLU SEQRES 21 A 334 TYR PHE SER GLN THR ASP GLU GLU LYS GLN GLN GLY LEU SEQRES 22 A 334 PRO VAL VAL MET PRO VAL PHE ASP ARG ASN THR CYS SER SEQRES 23 A 334 ILE PRO LYS SER GLN ILE SER PHE ILE ASP TYR PHE ILE SEQRES 24 A 334 THR ASP MET PHE ASP ALA TRP ASP ALA PHE VAL ASP LEU SEQRES 25 A 334 PRO ASP LEU MET GLN HIS LEU ASP ASN ASN PHE LYS TYR SEQRES 26 A 334 TRP LYS GLY LEU ASP GLU MET LYS LEU
HELIX 1 1 ARG A 3 GLU A 8 5 6 HELIX 2 2 ASP A 14 THR A 22 1 9 HELIX 3 3 ARG A 25 PHE A 38 1 14 HELIX 4 4 GLY A 39 LEU A 44 1 6 HELIX 5 5 SER A 47 ASN A 61 1 15 HELIX 6 6 ASN A 70 SER A 86 1 17 HELIX 7 7 LYS A 87 LYS A 91 5 5 HELIX 8 8 ASP A 95 HIS A 109 1 15 HELIX 9 9 THR A 117 ALA A 124 1 8 HELIX 10 10 SER A 126 TYR A 132 1 7 HELIX 11 11 ALA A 136 LEU A 149 1 14 HELIX 12 12 GLU A 163 ALA A 180 1 18 HELIX 13 13 THR A 181 HIS A 186 5 6 HELIX 14 14 PRO A 200 ALA A 202 5 3 HELIX 15 15 THR A 203 THR A 210 1 8 HELIX 16 16 THR A 223 VAL A 240 1 18 HELIX 17 17 SER A 241 ARG A 245 5 5 HELIX 18 18 PRO A 246 GLN A 271 1 26 HELIX 19 19 SER A 286 PHE A 298 1 13 HELIX 20 20 PHE A 298 VAL A 310 1 13 HELIX 21 21 PRO A 313 ASN A 321 1 9 HELIX 22 22 TRP A 326 GLU A 331 1 6
SHEET 1 A 2 VAL A 190 ASN A 191 0 SHEET 2 A 2 ASN A 195 SER A 196 -1 O ASN A 195 N ASN A 191
CISPEP 1 LEU A 201 ALA A 202 0 14.72 CISPEP 2 TYR A 325 TRP A 326 0 14.85
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000