10 20 30 40 50 60 70 80 1LWZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 04-JUN-02 1LWZ
TITLE HUMAN DNA TOPOISOMERASE II, ALPHA ISOZYME
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE II, ALPHA ISOZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 431-1200 COVALENTLY COMPND 5 BOUND TO 1244-1252, NUMBERED 1-779; COMPND 6 EC: 5.99.1.3
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN
KEYWDS ISOMERASE, TOPOISOMERASE, DNA-BINDING, ATP-BINDING, NUCLEAR KEYWDS 2 PROTEIN, ALTERNATIVE SPLICING, POLYMORPHISM
EXPDTA THEORETICAL MODEL
AUTHOR A.DASH
REVDAT 1 19-JUN-02 1LWZ 0
JRNL AUTH A.DASH JRNL TITL HUMAN DNA TOPOISOMERASE II, ALPHA ISOZYME JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SEQUENCE IS SUBMITTED TO REMARK 3 MODELLER WHICH DOES AUTOMATIC REFINEMENT USING CONJUGATE REMARK 3 GRADIENT AND MOLECULAR DYNAMIC SIMULATION.
REMARK 4 REMARK 4 1LWZ COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016363.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE QUERY SEQUENCE IS TAKEN FROM SWISSPROT, THEN IT WAS REMARK 220 BLASTED AGAINST PDB. TWO REFERENCE PROTEINS ARE TAKEN REMARK 220 HAVING HIGH IDENTITY AND LOW RESOLUTION. THE TWO REMARK 220 REFERENCE SEQUENCES ALONG WITH QUERY SEQUENCE WAS GIVEN REMARK 220 TO CLUSTALW FOR MULTIPLE ALIGNMENT. THE REFERENCE REMARK 220 PROTEIN ST AND SEQUENCE DOWNLOADED IN INSIGHTII. THE REMARK 220 THREE SEQUENCES ARE ALIGNED ACCORDING TO CLUSTALW. THE REMARK 220 BOXES ARE CREATED FOR SCR REGION. THE COORDINATES THEN REMARK 220 TRANSFERED FROM REFERENCE TO QUERY SEQUENCE. THEN QUERY REMARK 220 SEQUENCE IS SUBMITTED TO MODELLER.
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 695 CB PHE A 695 CG 0.128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 LYS A 99 C - N - CA ANGL. DEV. =-26.9 DEGREES REMARK 500 GLU A 141 CB - CA - C ANGL. DEV. =-20.0 DEGREES REMARK 500 TRP A 178 N - CA - CB ANGL. DEV. = 21.0 DEGREES REMARK 500 TRP A 178 CA - CB - CG ANGL. DEV. = 27.2 DEGREES REMARK 500 GLN A 207 C - N - CA ANGL. DEV. =-24.0 DEGREES REMARK 500 TYR A 265 CB - CA - C ANGL. DEV. =-30.4 DEGREES REMARK 500 TYR A 265 CA - CB - CG ANGL. DEV. = 20.6 DEGREES REMARK 500 ASN A 266 C - N - CA ANGL. DEV. = 20.7 DEGREES REMARK 500 PHE A 695 CD1 - CG - CD2 ANGL. DEV. =-44.2 DEGREES REMARK 500 PHE A 695 CB - CG - CD1 ANGL. DEV. = 31.3 DEGREES REMARK 500 PHE A 695 CG - CD1 - CE1 ANGL. DEV. =-72.5 DEGREES REMARK 500 PHE A 695 CG - CD2 - CE2 ANGL. DEV. =-30.1 DEGREES REMARK 500 PHE A 695 CD1 - CE1 - CZ ANGL. DEV. =-104.9 DEGREES REMARK 500 PHE A 695 CE1 - CZ - CE2 ANGL. DEV. =-67.4 DEGREES REMARK 500 PHE A 695 CZ - CE2 - CD2 ANGL. DEV. =-40.9 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 94 145.89 119.66 REMARK 500 SER A 97 -125.06 97.20 REMARK 500 GLN A 155 -110.72 -155.15 REMARK 500 TYR A 182 -85.12 115.50 REMARK 500 THR A 260 -109.31 166.95 REMARK 500 GLU A 672 137.39 72.43 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 98 LYS A 99 143.02 REMARK 500 ARG A 205 ILE A 206 -145.97
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BJT RELATED DB: PDB REMARK 900 TOPOISOMERASE II RESIDUES 409 - 1201 REMARK 900 RELATED ID: 1BGW RELATED DB: PDB REMARK 900 TOPOISOMERASE RESIDUES 410 - 1202
DBREF 1LWZ A 1 770 UNP P11388 TP2A_HUMAN 431 1200 DBREF 1LWZ A 771 779 UNP P11388 TP2A_HUMAN 1244 1252
SEQRES 1 A 779 LYS HIS ASN ARG ILE LYS GLY ILE PRO LYS LEU ASP ASP SEQRES 2 A 779 ALA ASN ASP ALA GLY GLY ARG ASN SER THR GLU CYS THR SEQRES 3 A 779 LEU ILE LEU THR GLU GLY ASP SER ALA LYS THR LEU ALA SEQRES 4 A 779 VAL SER GLY LEU GLY VAL VAL GLY ARG ASP LYS TYR GLY SEQRES 5 A 779 VAL PHE PRO LEU ARG GLY LYS ILE LEU ASN VAL ARG GLU SEQRES 6 A 779 ALA SER HIS LYS GLN ILE MET GLU ASN ALA GLU ILE ASN SEQRES 7 A 779 ASN ILE ILE LYS ILE VAL GLY LEU GLN TYR LYS LYS ASN SEQRES 8 A 779 TYR GLU ASP GLU ASP SER LEU LYS THR LEU ARG TYR GLY SEQRES 9 A 779 LYS ILE MET ILE MET THR ASP GLN ASP GLN ASP GLY SER SEQRES 10 A 779 HIS ILE LYS GLY LEU LEU ILE ASN PHE ILE HIS HIS ASN SEQRES 11 A 779 TRP PRO SER LEU LEU ARG HIS ARG PHE LEU GLU GLU PHE SEQRES 12 A 779 ILE THR PRO ILE VAL LYS VAL SER LYS ASN LYS GLN GLU SEQRES 13 A 779 MET ALA PHE TYR SER LEU PRO GLU PHE GLU GLU TRP LYS SEQRES 14 A 779 SER SER THR PRO ASN HIS LYS LYS TRP LYS VAL LYS TYR SEQRES 15 A 779 TYR LYS GLY LEU GLY THR SER THR SER LYS GLU ALA LYS SEQRES 16 A 779 GLU TYR PHE ALA ASP MET LYS ARG HIS ARG ILE GLN PHE SEQRES 17 A 779 LYS TYR SER GLY PRO GLU ASP ASP ALA ALA ILE SER LEU SEQRES 18 A 779 ALA PHE SER LYS LYS GLN ILE ASP ASP ARG LYS GLU TRP SEQRES 19 A 779 LEU THR ASN PHE MET GLU ASP ARG ARG GLN ARG LYS LEU SEQRES 20 A 779 LEU GLY LEU PRO GLU ASP TYR LEU TYR GLY GLN THR THR SEQRES 21 A 779 THR TYR LEU THR TYR ASN ASP PHE ILE ASN LYS GLU LEU SEQRES 22 A 779 ILE LEU PHE SER ASN SER ASP ASN GLU ARG SER ILE PRO SEQRES 23 A 779 SER MET VAL ASP GLY LEU LYS PRO GLY GLN ARG LYS VAL SEQRES 24 A 779 LEU PHE THR CYS PHE LYS ARG ASN ASP LYS ARG GLU VAL SEQRES 25 A 779 LYS VAL ALA GLN LEU ALA GLY SER VAL ALA GLU MET SER SEQRES 26 A 779 SER TYR HIS HIS GLY GLU MET SER LEU MET MET THR ILE SEQRES 27 A 779 ILE ASN LEU ALA GLN ASN PHE VAL GLY SER ASN ASN LEU SEQRES 28 A 779 ASN LEU LEU GLN PRO ILE GLY GLN PHE GLY THR ARG LEU SEQRES 29 A 779 HIS GLY GLY LYS ASP SER ALA SER PRO ARG TYR ILE PHE SEQRES 30 A 779 THR MET LEU SER SER LEU ALA ARG LEU LEU PHE PRO PRO SEQRES 31 A 779 LYS ASP ASP HIS THR LEU LYS PHE LEU TYR ASP ASP ASN SEQRES 32 A 779 GLN ARG VAL GLU PRO GLU TRP TYR ILE PRO ILE ILE PRO SEQRES 33 A 779 MET VAL LEU ILE ASN GLY ALA GLU GLY ILE GLY THR GLY SEQRES 34 A 779 TRP SER CYS LYS ILE PRO ASN PHE ASP VAL ARG GLU ILE SEQRES 35 A 779 VAL ASN ASN ILE ARG ARG LEU MET ASP GLY GLU GLU PRO SEQRES 36 A 779 LEU PRO MET LEU PRO SER TYR LYS ASN PHE LYS GLY THR SEQRES 37 A 779 ILE GLU GLU LEU ALA PRO ASN GLN TYR VAL ILE SER GLY SEQRES 38 A 779 GLU VAL ALA ILE LEU ASN SER THR THR ILE GLU ILE SER SEQRES 39 A 779 GLU LEU PRO VAL ARG THR TRP THR GLN THR TYR LYS GLU SEQRES 40 A 779 GLN VAL LEU GLU PRO MET LEU ASN GLY THR GLU LYS THR SEQRES 41 A 779 PRO PRO LEU ILE THR ASP TYR ARG GLU TYR HIS THR ASP SEQRES 42 A 779 THR THR VAL LYS PHE VAL VAL LYS MET THR GLU GLU LYS SEQRES 43 A 779 LEU ALA GLU ALA GLU ARG VAL GLY LEU HIS LYS VAL PHE SEQRES 44 A 779 LYS LEU GLN THR SER LEU THR CYS ASN SER MET VAL LEU SEQRES 45 A 779 PHE ASP HIS VAL GLY CYS LEU LYS LYS TYR ASP THR VAL SEQRES 46 A 779 LEU ASP ILE LEU ARG ASP PHE PHE GLU LEU ARG LEU LYS SEQRES 47 A 779 TYR TYR GLY LEU ARG LYS GLU TRP LEU LEU GLY MET LEU SEQRES 48 A 779 GLY ALA GLU SER ALA LYS LEU ASN ASN GLN ALA ARG PHE SEQRES 49 A 779 ILE LEU GLU LYS ILE ASP GLY LYS ILE ILE ILE GLU ASN SEQRES 50 A 779 LYS PRO LYS LYS GLU LEU ILE LYS VAL LEU ILE GLN ARG SEQRES 51 A 779 GLY TYR ASP SER ASP PRO VAL LYS ALA TRP LYS GLU ALA SEQRES 52 A 779 GLN GLN LYS VAL PRO ASP GLU GLU GLU ASN GLU GLU SER SEQRES 53 A 779 ASP ASN GLU LYS GLU THR GLU LYS SER ASP SER VAL THR SEQRES 54 A 779 ASP SER GLY PRO THR PHE ASN TYR LEU LEU ASP MET PRO SEQRES 55 A 779 LEU TRP TYR LEU THR LYS GLU LYS LYS ASP GLU LEU CYS SEQRES 56 A 779 ARG LEU ARG ASN GLU LYS GLU GLN GLU LEU ASP THR LEU SEQRES 57 A 779 LYS ARG LYS SER PRO SER ASP LEU TRP LYS GLU ASP LEU SEQRES 58 A 779 ALA THR PHE ILE GLU GLU LEU GLU ALA VAL GLU ALA LYS SEQRES 59 A 779 GLU LYS GLN ASP GLU GLN VAL GLY LEU PRO GLY LYS GLY SEQRES 60 A 779 GLY LYS ALA THR GLU GLY SER PRO GLN GLU ASP GLY
HELIX 1 1 GLY A 32 GLY A 47 1 16 HELIX 2 2 GLN A 70 GLY A 85 1 16 HELIX 3 3 SER A 117 TRP A 131 1 15 HELIX 4 4 TRP A 131 ARG A 136 1 6 HELIX 5 5 SER A 161 THR A 172 1 12 HELIX 6 6 PRO A 173 LYS A 176 5 4 HELIX 7 7 SER A 189 ARG A 205 1 17 HELIX 8 8 ASN A 270 ILE A 285 1 16 HELIX 9 9 PRO A 294 ASN A 307 1 14 HELIX 10 10 ALA A 315 TYR A 327 1 13 HELIX 11 11 GLU A 331 ASN A 344 1 14 HELIX 12 12 SER A 382 LEU A 387 5 6 HELIX 13 13 PRO A 390 LYS A 397 5 8 HELIX 14 14 MET A 417 ALA A 423 1 7 HELIX 15 15 VAL A 439 GLU A 453 1 15 HELIX 16 16 THR A 502 ASN A 515 1 14 HELIX 17 17 THR A 543 GLY A 554 1 12 HELIX 18 18 GLY A 554 PHE A 559 1 6 HELIX 19 19 THR A 584 ASP A 630 1 47 HELIX 20 20 PRO A 639 GLY A 651 1 13 HELIX 21 21 PHE A 695 ASP A 700 1 6 HELIX 22 22 PRO A 702 LEU A 706 5 5 HELIX 23 23 THR A 707 LYS A 731 1 25 HELIX 24 24 SER A 732 GLU A 759 1 28
SHEET 1 A 3 TYR A 51 LEU A 56 0 SHEET 2 A 3 THR A 26 GLU A 31 1 N THR A 30 O LEU A 56 SHEET 3 A 3 LYS A 105 THR A 110 1 O MET A 107 N LEU A 29 SHEET 1 B 2 VAL A 148 SER A 151 0 SHEET 2 B 2 GLU A 156 PHE A 159 -1 O PHE A 159 N VAL A 148 SHEET 1 C 3 LYS A 313 VAL A 314 0 SHEET 2 C 3 THR A 378 MET A 379 -1 O MET A 379 N LYS A 313 SHEET 3 C 3 ILE A 357 GLY A 358 -1 N GLY A 358 O THR A 378 SHEET 1 D 2 ASP A 401 ASP A 402 0 SHEET 2 D 2 ARG A 405 VAL A 406 -1 O ARG A 405 N ASP A 402 SHEET 1 E 2 ILE A 426 GLY A 427 0 SHEET 2 E 2 CYS A 432 LYS A 433 -1 O LYS A 433 N ILE A 426 SHEET 1 F 3 ILE A 469 LEU A 472 0 SHEET 2 F 3 TYR A 477 GLY A 481 -1 O GLY A 481 N ILE A 469 SHEET 3 F 3 GLN A 562 THR A 566 -1 O THR A 563 N SER A 480 SHEET 1 G 4 VAL A 483 SER A 488 0 SHEET 2 G 4 ILE A 491 LEU A 496 -1 O ILE A 493 N ILE A 485 SHEET 3 G 4 PHE A 538 LYS A 541 -1 O VAL A 540 N GLU A 492 SHEET 4 G 4 TYR A 527 TYR A 530 -1 N TYR A 527 O LYS A 541 SHEET 1 H 2 MET A 570 PHE A 573 0 SHEET 2 H 2 LEU A 579 TYR A 582 -1 O TYR A 582 N MET A 570
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000