1LWP - Header Asymmetric Unit

HEADER TRANSFERASE 02-JUN-02 1LWP

TITLE BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR

COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN; COMPND 5 SYNONYM: PDGF-R-BETA, CD140B ANTIGEN; COMPND 6 EC: 2.7.1.112

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN

KEYWDS TYROSINE-PROTEIN KINASE, RECEPTOR, TRANSMEMBRANE, KEYWDS 2 GLYCOPROTEIN, TRANSFERASE, PHOSPHORYLATION, ATP-BINDING, KEYWDS 3 IMMUNOGLOBULIN DOMAIN, SIGNAL, PROTO-ONCOGENE, CHROMOSOMAL KEYWDS 4 TRANSLOCATION

EXPDTA THEORETICAL MODEL

AUTHOR K.GAYATHRI,A.MUTHUVEL

REVDAT 1 19-JUN-02 1LWP 0

JRNL AUTH K.GAYATHRI,A.MUTHUVEL JRNL TITL BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: JOB WAS SUBMITTED TO MODELLER WHICH REMARK 3 DOES AUTOMATIC REFINEMENT USING CONJUGATE GRADIENT AND REMARK 3 MOLECULAR DYNAMIC SIMULATION.

REMARK 4 REMARK 4 1LWP COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-2002. REMARK 100 THE RCSB ID CODE IS RCSB016354.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CB PHE A 12 NE2 HIS A 21 2.13 REMARK 500 O GLU A 274 OD1 ASN A 278 2.15 REMARK 500 CB PHE A 12 CE1 HIS A 21 2.17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 115 151.72 77.13 REMARK 500 SER A 263 174.57 106.18

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2SRC RELATED DB: PDB REMARK 900 2SRC IS CRYSTAL STRUCTURE OF HUMAN TYROSINE-PROTEIN KINASE REMARK 900 C-SRC, IN COMPLEX WITH AMP-PNP

DBREF 1LWP A 1 363 UNP P09619 PGDR_HUMAN 600 962

SEQRES 1 A 363 LEU VAL LEU GLY ARG THR LEU GLY SER GLY ALA PHE GLY SEQRES 2 A 363 GLN VAL VAL GLU ALA THR ALA HIS GLY LEU SER HIS SER SEQRES 3 A 363 GLN ALA THR MET LYS VAL ALA VAL LYS MET LEU LYS SER SEQRES 4 A 363 THR ALA ARG SER SER GLU LYS GLN ALA LEU MET SER GLU SEQRES 5 A 363 LEU LYS ILE MET SER HIS LEU GLY PRO HIS LEU ASN VAL SEQRES 6 A 363 VAL ASN LEU LEU GLY ALA CYS THR LYS GLY GLY PRO ILE SEQRES 7 A 363 TYR ILE ILE THR GLU TYR CYS ARG TYR GLY ASP LEU VAL SEQRES 8 A 363 ASP TYR LEU HIS ARG ASN LYS HIS THR PHE LEU GLN HIS SEQRES 9 A 363 HIS SER ASP LYS ARG ARG PRO PRO SER ALA GLU LEU TYR SEQRES 10 A 363 SER ASN ALA LEU PRO VAL GLY LEU PRO LEU PRO SER HIS SEQRES 11 A 363 VAL SER LEU THR GLY GLU SER ASP GLY GLY TYR MET ASP SEQRES 12 A 363 MET SER LYS ASP GLU SER VAL ASP TYR VAL PRO MET LEU SEQRES 13 A 363 ASP MET LYS GLY ASP VAL LYS TYR ALA ASP ILE GLU SER SEQRES 14 A 363 SER ASN TYR MET ALA PRO TYR ASP ASN TYR VAL PRO SER SEQRES 15 A 363 ALA PRO GLU ARG THR CYS ARG ALA THR LEU ILE ASN GLU SEQRES 16 A 363 SER PRO VAL LEU SER TYR MET ASP LEU VAL GLY PHE SER SEQRES 17 A 363 TYR GLN VAL ALA ASN GLY MET GLU PHE LEU ALA SER LYS SEQRES 18 A 363 ASN CYS VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU SEQRES 19 A 363 ILE CYS GLU GLY LYS LEU VAL LYS ILE CYS ASP PHE GLY SEQRES 20 A 363 LEU ALA ARG ASP ILE MET ARG ASP SER ASN TYR ILE SER SEQRES 21 A 363 LYS GLY SER THR PHE LEU PRO LEU LYS TRP MET ALA PRO SEQRES 22 A 363 GLU SER ILE PHE ASN SER LEU TYR THR THR LEU SER ASP SEQRES 23 A 363 VAL TRP SER PHE GLY ILE LEU LEU TRP GLU ILE PHE THR SEQRES 24 A 363 LEU GLY GLY THR PRO TYR PRO GLU LEU PRO MET ASN GLU SEQRES 25 A 363 GLN PHE TYR ASN ALA ILE LYS ARG GLY TYR ARG MET ALA SEQRES 26 A 363 GLN PRO ALA HIS ALA SER ASP GLU ILE TYR GLU ILE MET SEQRES 27 A 363 GLN LYS CYS TRP GLU GLU LYS PHE GLU ILE ARG PRO PRO SEQRES 28 A 363 PHE SER GLN LEU VAL LEU LEU LEU GLU ARG LEU LEU

HELIX 1 1 ALA A 28 ALA A 33 1 6 HELIX 2 2 ALA A 41 SER A 51 1 11 HELIX 3 3 ARG A 86 ASN A 97 1 12 HELIX 4 4 ASP A 161 GLU A 168 1 8 HELIX 5 5 SER A 200 ASN A 222 1 23 HELIX 6 6 ALA A 229 ARG A 231 5 3 HELIX 7 7 GLU A 237 LYS A 239 5 3 HELIX 8 8 GLY A 247 ILE A 252 1 6 HELIX 9 9 ASP A 255 SER A 260 1 6 HELIX 10 10 ALA A 272 SER A 279 1 8 HELIX 11 11 THR A 282 THR A 299 1 18 HELIX 12 12 MET A 310 GLY A 321 1 12 HELIX 13 13 SER A 331 TRP A 342 1 12 HELIX 14 14 PRO A 351 ARG A 361 1 11

SHEET 1 A 3 VAL A 2 GLY A 4 0 SHEET 2 A 3 GLY A 10 GLN A 14 -1 O PHE A 12 N GLY A 4 SHEET 3 A 3 HIS A 21 HIS A 25 -1 O GLY A 22 N GLY A 13 SHEET 1 B 2 GLY A 76 TYR A 79 0 SHEET 2 B 2 THR A 82 TYR A 84 -1 O TYR A 84 N GLY A 76 SHEET 1 C 5 PRO A 128 GLU A 136 0 SHEET 2 C 5 TYR A 141 ASP A 147 -1 O MET A 142 N GLY A 135 SHEET 3 C 5 ASP A 151 ASP A 157 -1 O ASP A 151 N ASP A 147 SHEET 4 C 5 ARG A 186 ARG A 189 -1 O THR A 187 N LEU A 156 SHEET 5 C 5 TYR A 176 VAL A 180 -1 N ASN A 178 O CYS A 188 SHEET 1 D 2 VAL A 233 ILE A 235 0 SHEET 2 D 2 VAL A 241 ILE A 243 -1 O LYS A 242 N LEU A 234

CISPEP 1 ALA A 183 PRO A 184 0 -7.43

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000