10 20 30 40 50 60 70 80 1LQ7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DE NOVO PROTEIN 09-MAY-02 1LQ7
TITLE DE NOVO DESIGNED PROTEIN MODEL OF RADICAL ENZYMES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA3W; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PROTEIN MODEL FOR TRYPTOPHANYL RADICAL
SOURCE MOL_ID: 1; SOURCE 2 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 3 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET32; SOURCE 7 OTHER_DETAILS: DE NOVO DESIGN/SYNTHETIC GENE: GENE SOURCE 8 GENERATED USING OVERLAPPING PCR METHOD FROM SYNTHETIC SOURCE 9 OLIGOS
KEYWDS THREE HELIX BUNDLE, DE NOVO PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR Q.-H.DAI,C.TOMMOS,E.J.FUENTES,M.BLOMBERG,P.L.DUTTON,A.J.WAND
REVDAT 3 24-FEB-09 1LQ7 1 VERSN REVDAT 2 18-DEC-02 1LQ7 1 JRNL REVDAT 1 05-JUN-02 1LQ7 0
JRNL AUTH Q.-H.DAI,C.TOMMOS,E.J.FUENTES,M.BLOMBERG, JRNL AUTH 2 P.L.DUTTON,A.J.WAND JRNL TITL STRUCTURE OF A DE NOVO DESIGNED PROTEIN MODEL OF JRNL TITL 2 RADICAL ENZYMES JRNL REF J.AM.CHEM.SOC. V. 124 10952 2002 JRNL REFN ISSN 0002-7863 JRNL PMID 12224922 JRNL DOI 10.1021/JA0264201
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.TOMMOS,J.J.SKALICKY,D.L.PILLOUD,A.J.WAND, REMARK 1 AUTH 2 P.L.DUTTON REMARK 1 TITL DE NOVO PROTEINS AS MODELS OF RADICAL ENZYMES REMARK 1 REF BIOCHEMISTRY V. 38 9495 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI990609G
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GNTERT, C. MUMENTHALER, K. WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1130 NOES, 43 PHI RESTRAINTS
REMARK 4 REMARK 4 1LQ7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-02. REMARK 100 THE RCSB ID CODE IS RCSB016177.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301; 301 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 70 MM; 70 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.85 MM U-15N,13C-A3W, 20 MM REMARK 210 ACETATE, 50 MM KCL; 0.85 MM U- REMARK 210 15N,13C-A3W, 20 MM ACETATE, 50 REMARK 210 MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 4D_ REMARK 210 13C-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST REFINEMENT FUNCTION REMARK 210 PENALTY, BEST CHEMICAL SHIFT REMARK 210 AGREEMENT REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 16 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 -59.28 69.36 REMARK 500 1 GLU A 8 -32.96 -36.59 REMARK 500 1 ARG A 26 -34.82 177.46 REMARK 500 1 GLU A 29 -73.68 -47.21 REMARK 500 1 LEU A 44 99.99 -43.48 REMARK 500 1 LYS A 51 -31.79 -37.58 REMARK 500 1 LEU A 60 -70.12 -74.74 REMARK 500 2 ARG A 3 -57.54 -127.90 REMARK 500 2 GLU A 8 -32.38 -37.43 REMARK 500 2 ARG A 26 -84.82 -62.10 REMARK 500 2 LEU A 44 102.96 -41.65 REMARK 500 2 GLU A 49 34.54 -90.38 REMARK 500 2 LYS A 51 -31.71 -37.44 REMARK 500 2 LEU A 60 -71.69 -73.52 REMARK 500 3 SER A 2 78.66 -100.61 REMARK 500 3 ARG A 3 -66.38 -148.08 REMARK 500 3 GLU A 8 -33.15 -35.73 REMARK 500 3 ARG A 26 -81.71 -63.35 REMARK 500 3 LEU A 44 99.58 -41.28 REMARK 500 3 GLU A 49 33.29 -91.95 REMARK 500 3 LYS A 51 -31.57 -37.88 REMARK 500 3 LEU A 60 -72.42 -68.85 REMARK 500 4 SER A 2 -53.67 179.48 REMARK 500 4 GLU A 8 -33.23 -36.49 REMARK 500 4 ARG A 26 -77.51 -102.76 REMARK 500 4 GLU A 29 -73.95 -44.43 REMARK 500 4 LEU A 44 105.72 -41.70 REMARK 500 4 GLU A 49 34.12 -92.89 REMARK 500 4 LYS A 51 -32.33 -37.29 REMARK 500 4 LEU A 60 -74.11 -72.07 REMARK 500 5 SER A 2 68.71 -178.62 REMARK 500 5 ARG A 3 -58.64 -146.90 REMARK 500 5 GLU A 8 -33.85 -36.81 REMARK 500 5 ARG A 26 -69.76 -143.68 REMARK 500 5 GLU A 29 -74.53 -46.35 REMARK 500 5 LEU A 44 101.55 -41.28 REMARK 500 5 GLU A 49 34.12 -90.58 REMARK 500 5 LYS A 51 -31.19 -37.95 REMARK 500 5 VAL A 53 -71.67 -41.39 REMARK 500 5 GLU A 54 -70.29 -38.13 REMARK 500 5 LEU A 60 -72.57 -73.20 REMARK 500 6 SER A 2 -61.08 71.31 REMARK 500 6 ARG A 3 -61.52 -98.04 REMARK 500 6 GLU A 8 -31.73 -37.81 REMARK 500 6 ARG A 26 -84.36 -166.28 REMARK 500 6 LEU A 44 99.25 -43.30 REMARK 500 6 GLU A 49 36.37 -94.38 REMARK 500 6 LYS A 51 -31.13 -37.84 REMARK 500 6 VAL A 53 -70.60 -41.92 REMARK 500 6 LEU A 60 -72.27 -78.76 REMARK 500 7 SER A 2 -54.20 -154.83 REMARK 500 7 ARG A 3 -63.68 70.16 REMARK 500 7 GLU A 8 -30.78 -37.98 REMARK 500 7 LEU A 21 151.16 -47.71 REMARK 500 7 ARG A 26 -84.05 -72.55 REMARK 500 7 LYS A 32 -70.16 -70.95 REMARK 500 7 LEU A 44 105.20 -41.38 REMARK 500 7 GLU A 49 39.13 -89.29 REMARK 500 7 LYS A 51 -32.36 -36.76 REMARK 500 7 LEU A 60 -71.88 -62.78 REMARK 500 8 ARG A 3 -68.38 66.22 REMARK 500 8 GLU A 8 -32.81 -36.63 REMARK 500 8 ARG A 26 -84.03 -69.47 REMARK 500 8 GLU A 28 -27.25 -39.48 REMARK 500 8 LEU A 44 106.48 -41.21 REMARK 500 8 GLU A 49 39.30 -89.12 REMARK 500 8 LYS A 51 -31.05 -37.74 REMARK 500 8 VAL A 53 -70.49 -41.52 REMARK 500 8 GLU A 54 -70.15 -38.99 REMARK 500 8 LEU A 60 -70.95 -77.72 REMARK 500 9 ARG A 3 -60.91 -122.72 REMARK 500 9 GLU A 8 -34.52 -36.44 REMARK 500 9 ARG A 26 -79.73 178.11 REMARK 500 9 GLU A 29 -73.19 -50.30 REMARK 500 9 LEU A 44 97.32 -41.01 REMARK 500 9 GLU A 49 38.52 -89.32 REMARK 500 9 LYS A 51 -31.82 -37.56 REMARK 500 9 LEU A 60 -71.47 -76.71 REMARK 500 10 SER A 2 -64.79 -152.06 REMARK 500 10 GLU A 8 -33.65 -36.11 REMARK 500 10 ARG A 26 -81.01 -179.30 REMARK 500 10 LYS A 32 -70.25 -69.57 REMARK 500 10 LEU A 44 97.70 -41.82 REMARK 500 10 GLU A 49 33.58 -95.10 REMARK 500 10 LYS A 51 -31.43 -37.78 REMARK 500 10 LEU A 60 -73.24 -70.33 REMARK 500 11 SER A 2 91.50 -63.94 REMARK 500 11 ARG A 3 -71.93 -179.74 REMARK 500 11 GLU A 8 -34.02 -35.90 REMARK 500 11 LEU A 21 137.77 -39.61 REMARK 500 11 ARG A 26 -78.45 -163.95 REMARK 500 11 GLU A 29 -73.39 -50.52 REMARK 500 11 LEU A 44 99.56 -42.12 REMARK 500 11 GLU A 49 37.71 -94.62 REMARK 500 11 LYS A 51 -31.89 -37.74 REMARK 500 11 VAL A 53 -70.41 -41.30 REMARK 500 11 LEU A 60 -70.61 -73.58 REMARK 500 12 SER A 2 -75.68 -85.17 REMARK 500 12 ARG A 3 -83.81 -149.92 REMARK 500 12 GLU A 8 -31.09 -37.58 REMARK 500 12 ARG A 26 -73.72 -158.20 REMARK 500 12 GLU A 29 -72.50 -53.64 REMARK 500 12 LEU A 44 100.07 -42.20 REMARK 500 12 GLU A 49 30.26 -95.12 REMARK 500 12 LYS A 51 -31.63 -37.60 REMARK 500 12 LEU A 60 -72.79 -68.54 REMARK 500 13 SER A 2 138.63 169.12 REMARK 500 13 ARG A 3 -70.76 76.32 REMARK 500 13 VAL A 4 -66.87 -92.82 REMARK 500 13 GLU A 8 -32.16 -36.69 REMARK 500 13 ARG A 26 -78.15 -168.08 REMARK 500 13 GLU A 29 -73.98 -45.55 REMARK 500 13 LEU A 44 107.42 -41.18 REMARK 500 13 GLU A 49 40.69 -90.94 REMARK 500 13 LYS A 51 -31.18 -37.95 REMARK 500 13 LEU A 60 -72.80 -73.86 REMARK 500 14 SER A 2 73.89 52.86 REMARK 500 14 ARG A 3 -62.56 -137.21 REMARK 500 14 GLU A 8 -34.07 -35.87 REMARK 500 14 ARG A 26 -77.62 -163.45 REMARK 500 14 GLU A 29 -73.94 -49.90 REMARK 500 14 GLU A 49 33.41 -95.09 REMARK 500 14 LYS A 51 -32.02 -37.70 REMARK 500 14 LEU A 60 -72.37 -74.94 REMARK 500 15 SER A 2 56.83 -142.74 REMARK 500 15 ARG A 3 -69.86 -150.33 REMARK 500 15 GLU A 8 -34.10 -36.23 REMARK 500 15 ARG A 26 -34.53 176.17 REMARK 500 15 GLU A 29 -73.89 -44.93 REMARK 500 15 LEU A 44 105.39 -41.31 REMARK 500 15 GLU A 49 36.35 -91.19 REMARK 500 15 LYS A 51 -31.25 -37.86 REMARK 500 15 LEU A 60 -71.81 -75.28 REMARK 500 16 ARG A 3 -69.60 65.18 REMARK 500 16 GLU A 8 -38.39 -36.06 REMARK 500 16 ARG A 26 -33.50 174.77 REMARK 500 16 GLU A 29 -73.37 -50.68 REMARK 500 16 LEU A 44 109.75 -41.66 REMARK 500 16 LYS A 51 -31.52 -37.75 REMARK 500 16 LEU A 60 -70.66 -75.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE REMARK 999 WAS NOT AVAILABLE AT THE TIME OF PROCESSING.
DBREF 1LQ7 A 1 67 PDB 1LQ7 1LQ7 1 67
SEQRES 1 A 67 GLY SER ARG VAL LYS ALA LEU GLU GLU LYS VAL LYS ALA SEQRES 2 A 67 LEU GLU GLU LYS VAL LYS ALA LEU GLY GLY GLY GLY ARG SEQRES 3 A 67 ILE GLU GLU LEU LYS LYS LYS TRP GLU GLU LEU LYS LYS SEQRES 4 A 67 LYS ILE GLU GLU LEU GLY GLY GLY GLY GLU VAL LYS LYS SEQRES 5 A 67 VAL GLU GLU GLU VAL LYS LYS LEU GLU GLU GLU ILE LYS SEQRES 6 A 67 LYS LEU
HELIX 1 1 ARG A 3 LEU A 21 1 19 HELIX 2 2 ARG A 26 LEU A 44 1 19 HELIX 3 3 GLU A 49 LEU A 67 1 19
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000