10 20 30 40 50 60 70 80 1LPF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 26-OCT-92 1LPF
TITLE THREE-DIMENSIONAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM TITLE 2 PSEUDOMONAS FLUORESCENS AT 2.8 ANGSTROMS RESOLUTION. TITLE 3 ANALYSIS OF REDOX AND THERMOSTABILITY PROPERTIES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOAMIDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294
KEYWDS OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.MATTEVI,W.HOL
REVDAT 3 24-FEB-09 1LPF 1 VERSN REVDAT 2 01-APR-03 1LPF 1 JRNL REVDAT 1 31-JAN-94 1LPF 0
JRNL AUTH A.MATTEVI,G.OBMOLOVA,K.H.KALK,W.J.VAN BERKEL, JRNL AUTH 2 W.G.HOL JRNL TITL THREE-DIMENSIONAL STRUCTURE OF LIPOAMIDE JRNL TITL 2 DEHYDROGENASE FROM PSEUDOMONAS FLUORESCENS AT 2.8 JRNL TITL 3 A RESOLUTION. ANALYSIS OF REDOX AND JRNL TITL 4 THERMOSTABILITY PROPERTIES. JRNL REF J.MOL.BIOL. V. 230 1200 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8487301 JRNL DOI 10.1006/JMBI.1993.1236
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.MATTEVI,A.J.SCHIERBEEK,W.G.J.HOL REMARK 1 TITL THE REFINED CRYSTAL STRUCTURE OF LIPOAMIDE REMARK 1 TITL 2 DEHYDROGENASE FROM AZOTOBACTER VINELANDII AT 2.2 REMARK 1 TITL 3 ANGSTROMS RESOLUTION. A COMPARISON WITH THE REMARK 1 TITL 4 STRUCTURE OF GLUTATHIONE REDUCTASE REMARK 1 REF J.MOL.BIOL. V. 220 975 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.A.E.BENEN,W.J.H.VAN BERKEL,W.M.A.M.VAN DONGEN, REMARK 1 AUTH 2 F.MULLER,A.DEKOK REMARK 1 TITL MOLECULAR CLONING AND SEQUENCE DETERMINATION OF REMARK 1 TITL 2 THE GENE ENCODING LIPOAMIDE DEHYDROGENASE FROM REMARK 1 TITL 3 PSEUDOMONAS FLUORESCENS REMARK 1 REF J.GEN.MICROBIOL. V. 135 1787 1989 REMARK 1 REFN ISSN 0022-1287 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.J.SCHIERBEEK,M.B.A.SWARTE,B.W.DIJKSTRA,G.VRIEND, REMARK 1 AUTH 2 R.J.READ,W.G.J.HOL,J.DRENTH,C.BETZEL REMARK 1 TITL X-RAY STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM REMARK 1 TITL 2 AZOTOBACTER VINELANDII DETERMINED BY A COMBINATION REMARK 1 TITL 3 OF MOLECULAR AND ISOMORPHOUS REPLACEMENT TECHNIQUES REMARK 1 REF J.MOL.BIOL. V. 206 365 1989 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 3.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DURING REFINEMENT, RESIDUES 42, REMARK 3 163, 387, AND 388 OF EACH CHAIN WERE IDENTIFIED AS THR. THEY REMARK 3 ARE, IN FACT, VAL, SER, ALA, AND ALA, RESPECTIVELY. FOR THESE REMARK 3 RESIDUES, IN THIS ENTRY, THE SIDE CHAIN ATOMS BEYOND CB HAVE REMARK 3 BEEN REMOVED AND THE RESIDUES ARE PRESENTED WITH THEIR CORRECT REMARK 3 RESIDUE NAMES. THIS MATTER IS BEING INVESTIGATED BY THE REMARK 3 DEPOSITORS.
REMARK 4 REMARK 4 1LPF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE TWO INDEPENDENTLY REFINED SUBUNITS ARE RELATED BY THE REMARK 300 TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW. THIS REMARK 300 TRANSFORMATION WILL YIELD APPROXIMATE COORDINATES FOR REMARK 300 CHAIN *B* WHEN APPLIED TO CHAIN *A*. AFTER SUPERPOSITION, REMARK 300 THE RMS DIFFERENCE BETWEEN THE POSITIONS OF 3490 EQUIVALENT REMARK 300 ATOMS IS 0.14 ANGSTROMS.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 473 REMARK 465 ARG A 474 REMARK 465 LYS A 475 REMARK 465 LYS A 476 REMARK 465 ARG A 477 REMARK 465 ASN B 473 REMARK 465 ARG B 474 REMARK 465 LYS B 475 REMARK 465 LYS B 476 REMARK 465 ARG B 477
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 36 CG1 CG2 CD1 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 VAL A 42 CG1 CG2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 SER A 163 OG REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 ILE B 36 CG1 CG2 CD1 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 VAL B 42 CG1 CG2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 SER B 163 OG REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLU B 267 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 305 NE2 HIS A 305 CD2 -0.071 REMARK 500 HIS B 67 NE2 HIS B 67 CD2 -0.068 REMARK 500 HIS B 76 NE2 HIS B 76 CD2 -0.072 REMARK 500 HIS B 305 NE2 HIS B 305 CD2 -0.071 REMARK 500 HIS B 343 NE2 HIS B 343 CD2 -0.066 REMARK 500 HIS B 359 NE2 HIS B 359 CD2 -0.070 REMARK 500 HIS B 470 NE2 HIS B 470 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 66 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 VAL A 98 CG1 - CB - CG2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ILE A 166 CG1 - CB - CG2 ANGL. DEV. = -13.7 DEGREES REMARK 500 VAL A 168 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 TRP A 199 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP A 199 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 199 CG - CD2 - CE3 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LYS A 225 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 VAL A 276 CA - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 THR A 283 CA - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 321 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 339 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TRP A 364 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 364 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 391 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 397 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 MET A 434 CG - SD - CE ANGL. DEV. = -13.2 DEGREES REMARK 500 HIS A 458 CG - CD2 - NE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR B 16 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 93 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 THR B 102 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 VAL B 155 CA - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 VAL B 168 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 TRP B 199 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP B 199 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 VAL B 256 CA - CB - CG2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG B 278 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 278 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 279 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 THR B 283 CA - CB - CG2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 321 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 339 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 339 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP B 364 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP B 364 CB - CG - CD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 TRP B 364 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP B 364 CG - CD2 - CE3 ANGL. DEV. = 7.1 DEGREES REMARK 500 THR B 368 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG B 391 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 MET B 393 CA - CB - CG ANGL. DEV. = -11.3 DEGREES REMARK 500 HIS B 467 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 135 44.28 -92.17 REMARK 500 ASP A 164 -147.01 52.14 REMARK 500 ALA A 188 56.22 -108.48 REMARK 500 LEU A 216 51.98 35.24 REMARK 500 PRO A 217 -5.04 -55.36 REMARK 500 ASP A 260 -133.88 -106.31 REMARK 500 THR A 283 -87.57 -25.80 REMARK 500 ASP A 284 57.83 -119.70 REMARK 500 ALA A 288 -19.23 -48.40 REMARK 500 TYR A 357 44.61 -82.57 REMARK 500 ALA A 423 -37.79 -37.41 REMARK 500 SER A 449 144.14 -37.18 REMARK 500 ASN A 465 43.94 -109.96 REMARK 500 HIS A 470 31.32 -89.12 REMARK 500 ILE A 471 -53.69 -154.09 REMARK 500 GLU B 39 41.34 -108.50 REMARK 500 VAL B 51 20.08 -140.25 REMARK 500 CYS B 53 -76.54 -40.20 REMARK 500 ASP B 135 44.69 -87.24 REMARK 500 LYS B 137 108.96 -48.33 REMARK 500 ASP B 164 -142.06 49.20 REMARK 500 ILE B 166 -60.83 -90.42 REMARK 500 ALA B 188 62.17 -111.72 REMARK 500 LEU B 216 57.53 30.88 REMARK 500 ASP B 260 -143.39 -110.70 REMARK 500 THR B 283 -87.08 -19.67 REMARK 500 ASP B 303 -159.40 -91.80 REMARK 500 CYS B 306 13.30 57.50 REMARK 500 TYR B 357 47.13 -96.04 REMARK 500 ASP B 411 32.96 -99.84 REMARK 500 SER B 449 135.99 -38.41 REMARK 500 HIS B 467 48.14 -81.07 REMARK 500 ILE B 471 -52.47 -153.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 EACH HELIX IS LABELED BY TWO DIGITS. THE FIRST INDICATES REMARK 650 THE DOMAIN WHERE THE HELIX IS LOCATED AND THE SECOND GIVES REMARK 650 ITS SEQUENTIAL NUMBER. THE DIGITS ARE SEPARATED BY THE REMARK 650 CHAIN IDENTIFIER. BECAUSE THE HELIX IDENTIFIERS ARE REMARK 650 RESTRICTED TO THREE CHARACTERS, HELIX 4-10 AND 4-11 OF BOTH REMARK 650 CHAINS ARE LABELED 4A1, 4AA, 4B1 AND 4BA.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 480 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 480
DBREF 1LPF A 1 477 UNP P14218 DLDH_PSEFL 1 477 DBREF 1LPF B 1 477 UNP P14218 DLDH_PSEFL 1 477
SEQRES 1 A 477 SER GLN LYS PHE ASP VAL VAL VAL ILE GLY ALA GLY PRO SEQRES 2 A 477 GLY GLY TYR VAL ALA ALA ILE ARG ALA ALA GLN LEU GLY SEQRES 3 A 477 LEU LYS THR ALA CYS ILE GLU LYS TYR ILE GLY LYS GLU SEQRES 4 A 477 GLY LYS VAL ALA LEU GLY GLY THR CYS LEU ASN VAL GLY SEQRES 5 A 477 CYS ILE PRO SER LYS ALA LEU LEU ASP SER SER TYR LYS SEQRES 6 A 477 TYR HIS GLU ALA LYS GLU ALA PHE LYS VAL HIS GLY ILE SEQRES 7 A 477 GLU ALA LYS GLY VAL THR ILE ASP VAL PRO ALA MET VAL SEQRES 8 A 477 ALA ARG LYS ALA ASN ILE VAL LYS ASN LEU THR GLY GLY SEQRES 9 A 477 ILE ALA THR LEU PHE LYS ALA ASN GLY VAL THR SER PHE SEQRES 10 A 477 GLU GLY HIS GLY LYS LEU LEU ALA ASN LYS GLN VAL GLU SEQRES 11 A 477 VAL THR GLY LEU ASP GLY LYS THR GLN VAL LEU GLU ALA SEQRES 12 A 477 GLU ASN VAL ILE ILE ALA SER GLY SER ARG PRO VAL GLU SEQRES 13 A 477 ILE PRO PRO ALA PRO LEU SER ASP ASP ILE ILE VAL ASP SEQRES 14 A 477 SER THR GLY ALA LEU GLU PHE GLN ALA VAL PRO LYS LYS SEQRES 15 A 477 LEU GLY VAL ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU SEQRES 16 A 477 GLY SER VAL TRP ALA ARG LEU GLY ALA GLU VAL THR VAL SEQRES 17 A 477 LEU GLU ALA LEU ASP LYS PHE LEU PRO ALA ALA ASP GLU SEQRES 18 A 477 GLN ILE ALA LYS GLU ALA LEU LYS VAL LEU THR LYS GLN SEQRES 19 A 477 GLY LEU ASN ILE ARG LEU GLY ALA ARG VAL THR ALA SER SEQRES 20 A 477 GLU VAL LYS LYS LYS GLN VAL THR VAL THR PHE THR ASP SEQRES 21 A 477 ALA ASN GLY GLU GLN LYS GLU THR PHE ASP LYS LEU ILE SEQRES 22 A 477 VAL ALA VAL GLY ARG ARG PRO VAL THR THR ASP LEU LEU SEQRES 23 A 477 ALA ALA ASP SER GLY VAL THR LEU ASP GLU ARG GLY PHE SEQRES 24 A 477 ILE TYR VAL ASP ASP HIS CYS LYS THR SER VAL PRO GLY SEQRES 25 A 477 VAL PHE ALA ILE GLY ASP VAL VAL ARG GLY ALA MET LEU SEQRES 26 A 477 ALA HIS LYS ALA SER GLU GLU GLY VAL MET VAL ALA GLU SEQRES 27 A 477 ARG ILE ALA GLY HIS LYS ALA GLN MET ASN TYR ASP LEU SEQRES 28 A 477 ILE PRO SER VAL ILE TYR THR HIS PRO GLU ILE ALA TRP SEQRES 29 A 477 VAL GLY LYS THR GLU GLN THR LEU LYS ALA GLU GLY VAL SEQRES 30 A 477 GLU VAL ASN VAL GLY THR PHE PRO PHE ALA ALA SER GLY SEQRES 31 A 477 ARG ALA MET ALA ALA ASN ASP THR THR GLY LEU VAL LYS SEQRES 32 A 477 VAL ILE ALA ASP ALA LYS THR ASP ARG VAL LEU GLY VAL SEQRES 33 A 477 HIS VAL ILE GLY PRO SER ALA ALA GLU LEU VAL GLN GLN SEQRES 34 A 477 GLY ALA ILE GLY MET GLU PHE GLY THR SER ALA GLU ASP SEQRES 35 A 477 LEU GLY MET MET VAL PHE SER HIS PRO THR LEU SER GLU SEQRES 36 A 477 ALA LEU HIS GLU ALA ALA LEU ALA VAL ASN GLY HIS ALA SEQRES 37 A 477 ILE HIS ILE ALA ASN ARG LYS LYS ARG SEQRES 1 B 477 SER GLN LYS PHE ASP VAL VAL VAL ILE GLY ALA GLY PRO SEQRES 2 B 477 GLY GLY TYR VAL ALA ALA ILE ARG ALA ALA GLN LEU GLY SEQRES 3 B 477 LEU LYS THR ALA CYS ILE GLU LYS TYR ILE GLY LYS GLU SEQRES 4 B 477 GLY LYS VAL ALA LEU GLY GLY THR CYS LEU ASN VAL GLY SEQRES 5 B 477 CYS ILE PRO SER LYS ALA LEU LEU ASP SER SER TYR LYS SEQRES 6 B 477 TYR HIS GLU ALA LYS GLU ALA PHE LYS VAL HIS GLY ILE SEQRES 7 B 477 GLU ALA LYS GLY VAL THR ILE ASP VAL PRO ALA MET VAL SEQRES 8 B 477 ALA ARG LYS ALA ASN ILE VAL LYS ASN LEU THR GLY GLY SEQRES 9 B 477 ILE ALA THR LEU PHE LYS ALA ASN GLY VAL THR SER PHE SEQRES 10 B 477 GLU GLY HIS GLY LYS LEU LEU ALA ASN LYS GLN VAL GLU SEQRES 11 B 477 VAL THR GLY LEU ASP GLY LYS THR GLN VAL LEU GLU ALA SEQRES 12 B 477 GLU ASN VAL ILE ILE ALA SER GLY SER ARG PRO VAL GLU SEQRES 13 B 477 ILE PRO PRO ALA PRO LEU SER ASP ASP ILE ILE VAL ASP SEQRES 14 B 477 SER THR GLY ALA LEU GLU PHE GLN ALA VAL PRO LYS LYS SEQRES 15 B 477 LEU GLY VAL ILE GLY ALA GLY VAL ILE GLY LEU GLU LEU SEQRES 16 B 477 GLY SER VAL TRP ALA ARG LEU GLY ALA GLU VAL THR VAL SEQRES 17 B 477 LEU GLU ALA LEU ASP LYS PHE LEU PRO ALA ALA ASP GLU SEQRES 18 B 477 GLN ILE ALA LYS GLU ALA LEU LYS VAL LEU THR LYS GLN SEQRES 19 B 477 GLY LEU ASN ILE ARG LEU GLY ALA ARG VAL THR ALA SER SEQRES 20 B 477 GLU VAL LYS LYS LYS GLN VAL THR VAL THR PHE THR ASP SEQRES 21 B 477 ALA ASN GLY GLU GLN LYS GLU THR PHE ASP LYS LEU ILE SEQRES 22 B 477 VAL ALA VAL GLY ARG ARG PRO VAL THR THR ASP LEU LEU SEQRES 23 B 477 ALA ALA ASP SER GLY VAL THR LEU ASP GLU ARG GLY PHE SEQRES 24 B 477 ILE TYR VAL ASP ASP HIS CYS LYS THR SER VAL PRO GLY SEQRES 25 B 477 VAL PHE ALA ILE GLY ASP VAL VAL ARG GLY ALA MET LEU SEQRES 26 B 477 ALA HIS LYS ALA SER GLU GLU GLY VAL MET VAL ALA GLU SEQRES 27 B 477 ARG ILE ALA GLY HIS LYS ALA GLN MET ASN TYR ASP LEU SEQRES 28 B 477 ILE PRO SER VAL ILE TYR THR HIS PRO GLU ILE ALA TRP SEQRES 29 B 477 VAL GLY LYS THR GLU GLN THR LEU LYS ALA GLU GLY VAL SEQRES 30 B 477 GLU VAL ASN VAL GLY THR PHE PRO PHE ALA ALA SER GLY SEQRES 31 B 477 ARG ALA MET ALA ALA ASN ASP THR THR GLY LEU VAL LYS SEQRES 32 B 477 VAL ILE ALA ASP ALA LYS THR ASP ARG VAL LEU GLY VAL SEQRES 33 B 477 HIS VAL ILE GLY PRO SER ALA ALA GLU LEU VAL GLN GLN SEQRES 34 B 477 GLY ALA ILE GLY MET GLU PHE GLY THR SER ALA GLU ASP SEQRES 35 B 477 LEU GLY MET MET VAL PHE SER HIS PRO THR LEU SER GLU SEQRES 36 B 477 ALA LEU HIS GLU ALA ALA LEU ALA VAL ASN GLY HIS ALA SEQRES 37 B 477 ILE HIS ILE ALA ASN ARG LYS LYS ARG
HET FAD A 480 53 HET FAD B 480 53
HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE
FORMUL 3 FAD 2(C27 H33 N9 O15 P2)
HELIX 1 1A1 GLY A 12 LEU A 25 1 14 HELIX 2 1A2 GLY A 46 ALA A 72 1 27 HELIX 3 1A3 VAL A 87 ASN A 112 1 26 HELIX 4 2A4 SER A 170 LEU A 174 1 5 HELIX 5 2A5 VAL A 190 LEU A 202 1 13 HELIX 6 2A6 GLU A 221 GLN A 234 1 14 HELIX 7 3A7 ALA A 326 ILE A 340 1 15 HELIX 8 4A8 GLU A 369 ALA A 374 1 6 HELIX 9 4A9 ALA A 423 GLU A 435 1 13 HELIX 10 4A1 ALA A 440 MET A 445 1 6 HELIX 11 4AA SER A 454 VAL A 464 1 11 HELIX 12 1B1 GLY B 12 LEU B 25 1 14 HELIX 13 1B2 GLY B 46 ALA B 72 1 27 HELIX 14 1B3 VAL B 87 ASN B 112 1 26 HELIX 15 2B4 SER B 170 LEU B 174 1 5 HELIX 16 2B5 VAL B 190 LEU B 202 1 13 HELIX 17 2B6 GLU B 221 GLN B 234 1 14 HELIX 18 3B7 ALA B 326 ILE B 340 1 15 HELIX 19 4B8 GLU B 369 ALA B 374 1 6 HELIX 20 4B9 ALA B 423 GLU B 435 1 13 HELIX 21 4B1 ALA B 440 MET B 445 1 6 HELIX 22 4BA SER B 454 VAL B 464 1 11
SHEET 1 AA 6 VAL A 114 GLY A 119 0 SHEET 2 AA 6 THR A 29 GLU A 33 1 SHEET 3 AA 6 LYS A 3 ILE A 9 1 SHEET 4 AA 6 ASN A 145 ALA A 149 1 SHEET 5 AA 6 GLY A 312 ALA A 315 1 SHEET 6 AA 6 CYS A 306 THR A 308 -1 SHEET 1 BA 3 HIS A 120 LEU A 124 0 SHEET 2 BA 3 GLN A 128 GLY A 133 -1 SHEET 3 BA 3 THR A 138 ILE A 148 -1 SHEET 1 CA 4 ASN A 237 ARG A 239 0 SHEET 2 CA 4 GLU A 205 LEU A 209 1 SHEET 3 CA 4 LYS A 181 ILE A 186 1 SHEET 4 CA 4 LEU A 272 VAL A 274 1 SHEET 1 DA 3 ARG A 243 ARG A 243 0 SHEET 2 DA 3 GLN A 253 THR A 259 -1 SHEET 3 DA 3 GLU A 264 PHE A 269 -1 SHEET 1 EA 5 SER A 354 HIS A 359 0 SHEET 2 EA 5 GLU A 361 GLY A 366 -1 SHEET 3 EA 5 VAL A 413 GLY A 420 -1 SHEET 4 EA 5 LEU A 401 ASP A 407 -1 SHEET 5 EA 5 VAL A 379 PRO A 385 -1 SHEET 1 FA 2 SER A 152 VAL A 155 0 SHEET 2 FA 2 GLY A 277 VAL A 281 -1 SHEET 1 AB 6 VAL B 114 GLY B 119 0 SHEET 2 AB 6 THR B 29 GLU B 33 1 SHEET 3 AB 6 LYS B 3 ILE B 9 1 SHEET 4 AB 6 ASN B 145 ALA B 149 1 SHEET 5 AB 6 GLY B 312 ALA B 315 1 SHEET 6 AB 6 CYS B 306 THR B 308 -1 SHEET 1 BB 3 HIS B 120 LEU B 124 0 SHEET 2 BB 3 GLN B 128 GLY B 133 -1 SHEET 3 BB 3 THR B 138 ILE B 148 -1 SHEET 1 CB 4 ASN B 237 ARG B 239 0 SHEET 2 CB 4 GLU B 205 LEU B 209 1 SHEET 3 CB 4 LYS B 181 ILE B 186 1 SHEET 4 CB 4 LEU B 272 VAL B 274 1 SHEET 1 DB 3 ARG B 243 ARG B 243 0 SHEET 2 DB 3 GLN B 253 THR B 259 -1 SHEET 3 DB 3 GLU B 264 PHE B 269 -1 SHEET 1 EB 5 SER B 354 HIS B 359 0 SHEET 2 EB 5 GLU B 361 GLY B 366 -1 SHEET 3 EB 5 VAL B 413 GLY B 420 -1 SHEET 4 EB 5 LEU B 401 ASP B 407 -1 SHEET 5 EB 5 VAL B 379 PRO B 385 -1 SHEET 1 FB 2 SER B 152 VAL B 155 0 SHEET 2 FB 2 GLY B 277 VAL B 281 -1
SSBOND 1 CYS A 48 CYS A 53 1555 1555 1.99 SSBOND 2 CYS B 48 CYS B 53 1555 1555 2.03
CISPEP 1 HIS A 359 PRO A 360 0 10.73 CISPEP 2 HIS A 450 PRO A 451 0 -16.51 CISPEP 3 HIS B 359 PRO B 360 0 6.06 CISPEP 4 HIS B 450 PRO B 451 0 -15.35
SITE 1 AC1 31 ILE A 9 GLY A 10 GLY A 12 PRO A 13 SITE 2 AC1 31 GLY A 14 GLU A 33 LYS A 34 TYR A 35 SITE 3 AC1 31 GLY A 46 THR A 47 CYS A 48 VAL A 51 SITE 4 AC1 31 GLY A 52 CYS A 53 SER A 56 LYS A 57 SITE 5 AC1 31 GLY A 119 GLY A 121 ALA A 149 SER A 150 SITE 6 AC1 31 GLY A 151 ILE A 191 ARG A 278 LEU A 285 SITE 7 AC1 31 GLY A 317 ASP A 318 MET A 324 LEU A 325 SITE 8 AC1 31 ALA A 326 HIS B 450 PRO B 451 SITE 1 AC2 33 HIS A 450 PRO A 451 ILE B 9 GLY B 10 SITE 2 AC2 33 GLY B 12 PRO B 13 GLY B 14 GLU B 33 SITE 3 AC2 33 LYS B 34 GLY B 46 THR B 47 CYS B 48 SITE 4 AC2 33 VAL B 51 GLY B 52 CYS B 53 LYS B 57 SITE 5 AC2 33 GLY B 119 HIS B 120 GLY B 121 ALA B 149 SITE 6 AC2 33 SER B 150 GLY B 151 SER B 152 SER B 170 SITE 7 AC2 33 ILE B 191 ARG B 278 LEU B 285 GLY B 317 SITE 8 AC2 33 ASP B 318 MET B 324 LEU B 325 ALA B 326 SITE 9 AC2 33 HIS B 327
CRYST1 113.600 66.400 164.300 90.00 99.20 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008803 0.000000 0.001426 0.00000
SCALE2 0.000000 0.015060 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006166 0.00000
MTRIX1 1 0.192992 -0.392840 -0.899128 -58.80100 1
MTRIX2 1 -0.390670 -0.871354 0.296850 2.82000 1
MTRIX3 1 -0.900073 0.293972 -0.321635 -79.19700 1