10 20 30 40 50 60 70 80 1LF6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 10-APR-02 1LF6
TITLE CRYSTAL STRUCTURE OF BACTERIAL GLUCOAMYLASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOAMYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUCAN 1,4-ALPHA-GLUCOSIDASE, 1,4-ALPHA-D-GLUCAN COMPND 5 GLUCOHYDROLASE, AMYLOGLUCOSIDASE, GAMMA-AMYLASE, LYSOSOMAL COMPND 6 ALPHA-GLUCOSIDASE, EXO-1,4-ALPHA-GLUCOSIDASE; COMPND 7 EC: 3.2.1.3
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTERIUM SOURCE 3 THERMOSACCHAROLYTICUM; SOURCE 4 ORGANISM_TAXID: 1517; SOURCE 5 STRAIN: DSM 571
KEYWDS (ALPHA/ALPHA) BARREL, 6 ALPHA-HELICAL HAIRPIN TORROID, KEYWDS 2 SUPER BETA SANDWICH, CARBOHYDRASE FAMILY GH15, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.E.ALESHIN,P.-H.FENG,R.B.HONZATKO,P.J.REILLY
REVDAT 2 24-FEB-09 1LF6 1 VERSN REVDAT 1 25-FEB-03 1LF6 0
JRNL AUTH A.E.ALESHIN,P.-H.FENG,R.B.HONZATKO,P.J.REILLY JRNL TITL CRYSTAL STRUCTURE AND EVOLUTION OF PROKARYOTIC JRNL TITL 2 GLUCOAMYLASE JRNL REF J.MOL.BIOL. V. 327 61 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12614608 JRNL DOI 10.1016/S0022-2836(03)00084-6
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3080144.380 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 75429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5360 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9762 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 744 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 908 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.66000 REMARK 3 B22 (A**2) : 8.30000 REMARK 3 B33 (A**2) : -4.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 50.64 REMARK 3 REMARK 3 NCS MODEL : RESTRAIN REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.15 ; 30 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; 8 REMARK 3 GROUP 2 POSITIONAL (A) : 0.24 ; 30 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; 8 REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1LF6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-02. REMARK 100 THE RCSB ID CODE IS RCSB015893.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.01 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS-HCL, LITHIUM REMARK 280 SULFATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 24K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.59300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.59300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PRESUMABLE BIOLOGICAL ASSEMBLY IS A MONOMER, BUT THE REMARK 300 CRYSTALLOGRAPHICALLY OBSERVED DIMER MAY ALSO BE FUNCTIONAL
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 CYS A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 ASN A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 VAL B 1 REMARK 465 LEU B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 CYS B 5 REMARK 465 SER B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 465 VAL B 9 REMARK 465 SER B 10
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP B 30 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP B 676 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 -125.51 -104.98 REMARK 500 TYR A 64 138.97 -175.87 REMARK 500 LYS A 83 -56.74 -124.58 REMARK 500 SER A 84 -76.53 -130.30 REMARK 500 LYS A 91 -18.58 -142.30 REMARK 500 LEU A 105 48.49 -91.54 REMARK 500 PHE A 125 -177.78 -173.26 REMARK 500 ARG A 183 116.94 -168.27 REMARK 500 ASP A 184 -132.22 61.05 REMARK 500 SER A 200 129.99 -170.32 REMARK 500 VAL A 206 -71.01 -118.49 REMARK 500 GLN A 218 149.75 -175.96 REMARK 500 ASN A 241 126.94 178.90 REMARK 500 PRO A 324 133.83 -38.78 REMARK 500 ASN A 333 87.81 33.03 REMARK 500 TYR A 389 -89.44 -110.61 REMARK 500 LEU A 417 -60.54 -123.93 REMARK 500 TYR A 501 158.55 179.41 REMARK 500 LEU A 508 -167.42 -113.65 REMARK 500 PHE A 515 116.07 -167.81 REMARK 500 PRO A 568 2.26 -69.30 REMARK 500 ARG A 597 -165.06 -108.47 REMARK 500 HIS A 669 34.94 72.92 REMARK 500 ILE B 12 131.55 -172.23 REMARK 500 SER B 60 -121.88 -105.21 REMARK 500 TYR B 64 139.40 -178.62 REMARK 500 LYS B 83 -55.53 -123.22 REMARK 500 SER B 84 -74.19 -132.04 REMARK 500 LYS B 91 -15.66 -140.68 REMARK 500 LEU B 105 48.91 -94.70 REMARK 500 PHE B 125 -179.56 -172.97 REMARK 500 ASP B 184 -127.80 57.75 REMARK 500 SER B 200 129.96 -170.86 REMARK 500 VAL B 206 -66.21 -121.41 REMARK 500 ASN B 207 32.31 -144.95 REMARK 500 HIS B 222 55.79 -141.75 REMARK 500 ASN B 241 131.70 -175.91 REMARK 500 ASN B 333 86.90 35.54 REMARK 500 TYR B 389 -89.24 -108.44 REMARK 500 LEU B 417 -63.75 -122.08 REMARK 500 ASP B 467 64.27 -102.33 REMARK 500 TYR B 501 160.15 174.35 REMARK 500 PHE B 515 116.24 -162.78 REMARK 500 ARG B 597 -165.31 -112.27 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 950 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 951
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AYX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLUCOAMYLASE FROM SACCHAROMYCOPSIS REMARK 900 FIBULIGERA AT 1.7 ANGSTROMS REMARK 900 RELATED ID: 3GLY RELATED DB: PDB REMARK 900 REFINED CRYSTAL STRUCTURES OF GLUCOAMYLASE FROM ASPERGILLUS REMARK 900 AWAMORI VAR. X100 REMARK 900 RELATED ID: 1LF9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACTERIAL GLUCOAMYLASE COMPLEXED WITH REMARK 900 ACARBOSE
REMARK 999 REMARK 999 SEQUENCE AUTHOR STATES THE SEQUENCE OF THIS CRYSTAL STRUCTURE REMARK 999 DIFFERS FROM THE DNA SEQUENCE OF GENBANK ENTRY AAC24003. THE REMARK 999 CRYSTAL STRUCTURE HAS INSERTIONS AT RESIDUE 125 AND AFTER REMARK 999 RESIDUE 679. THESE DIFFERENCES ARE CONSISTENT WITH GENBANK ENTRY REMARK 999 BAA02251.
DBREF 1LF6 A 1 679 UNP O85672 O85672_CLOTS 18 695 DBREF 1LF6 B 1 679 UNP O85672 O85672_CLOTS 18 695
SEQADV 1LF6 PHE A 125 UNP O85672 SEE REMARK 999 SEQADV 1LF6 GLN A 252 UNP O85672 GLY 268 CONFLICT SEQADV 1LF6 LYS A 680 UNP O85672 SEE REMARK 999 SEQADV 1LF6 ARG A 681 UNP O85672 SEE REMARK 999 SEQADV 1LF6 TYR A 682 UNP O85672 SEE REMARK 999 SEQADV 1LF6 VAL A 683 UNP O85672 SEE REMARK 999 SEQADV 1LF6 ALA A 684 UNP O85672 SEE REMARK 999 SEQADV 1LF6 PHE B 125 UNP O85672 SEE REMARK 999 SEQADV 1LF6 GLN B 252 UNP O85672 GLY 268 CONFLICT SEQADV 1LF6 LYS B 680 UNP O85672 SEE REMARK 999 SEQADV 1LF6 ARG B 681 UNP O85672 SEE REMARK 999 SEQADV 1LF6 TYR B 682 UNP O85672 SEE REMARK 999 SEQADV 1LF6 VAL B 683 UNP O85672 SEE REMARK 999 SEQADV 1LF6 ALA B 684 UNP O85672 SEE REMARK 999
SEQRES 1 A 684 VAL LEU SER GLY CYS SER ASN ASN VAL SER SER ILE LYS SEQRES 2 A 684 ILE ASP ARG PHE ASN ASN ILE SER ALA VAL ASN GLY PRO SEQRES 3 A 684 GLY GLU GLU ASP THR TRP ALA SER ALA GLN LYS GLN GLY SEQRES 4 A 684 VAL GLY THR ALA ASN ASN TYR VAL SER LYS VAL TRP PHE SEQRES 5 A 684 THR LEU ALA ASN GLY ALA ILE SER GLU VAL TYR TYR PRO SEQRES 6 A 684 THR ILE ASP THR ALA ASP VAL LYS GLU ILE LYS PHE ILE SEQRES 7 A 684 VAL THR ASP GLY LYS SER PHE VAL PRO ASP GLU THR LYS SEQRES 8 A 684 ASP ALA ILE SER LYS VAL GLU LYS PHE THR ASP LYS SER SEQRES 9 A 684 LEU GLY TYR LYS LEU VAL ASN THR ASP LYS LYS GLY ARG SEQRES 10 A 684 TYR ARG ILE THR LYS ASP ILE PHE THR ASP VAL LYS ARG SEQRES 11 A 684 ASN SER LEU ILE MET LYS ALA LYS PHE GLU ALA LEU GLU SEQRES 12 A 684 GLY SER ILE HIS ASP TYR LYS LEU TYR LEU ALA TYR ASP SEQRES 13 A 684 PRO HIS ILE LYS ASN GLN GLY SER TYR ASN GLU GLY TYR SEQRES 14 A 684 VAL ILE LYS ALA ASN ASN ASN GLU MET LEU MET ALA LYS SEQRES 15 A 684 ARG ASP ASN VAL TYR THR ALA LEU SER SER ASN ILE GLY SEQRES 16 A 684 TRP LYS GLY TYR SER ILE GLY TYR TYR LYS VAL ASN ASP SEQRES 17 A 684 ILE MET THR ASP LEU ASP GLU ASN LYS GLN MET THR LYS SEQRES 18 A 684 HIS TYR ASP SER ALA ARG GLY ASN ILE ILE GLU GLY ALA SEQRES 19 A 684 GLU ILE ASP LEU THR LYS ASN SER GLU PHE GLU ILE VAL SEQRES 20 A 684 LEU SER PHE GLY GLN SER ASP SER GLU ALA ALA LYS THR SEQRES 21 A 684 ALA LEU GLU THR LEU GLY GLU ASP TYR ASN ASN LEU LYS SEQRES 22 A 684 ASN ASN TYR ILE ASP GLU TRP THR LYS TYR CYS ASN THR SEQRES 23 A 684 LEU ASN ASN PHE ASN GLY LYS ALA ASN SER LEU TYR TYR SEQRES 24 A 684 ASN SER MET MET ILE LEU LYS ALA SER GLU ASP LYS THR SEQRES 25 A 684 ASN LYS GLY ALA TYR ILE ALA SER LEU SER ILE PRO TRP SEQRES 26 A 684 GLY ASP GLY GLN ARG ASP ASP ASN THR GLY GLY TYR HIS SEQRES 27 A 684 LEU VAL TRP SER ARG ASP LEU TYR HIS VAL ALA ASN ALA SEQRES 28 A 684 PHE ILE ALA ALA GLY ASP VAL ASP SER ALA ASN ARG SER SEQRES 29 A 684 LEU ASP TYR LEU ALA LYS VAL VAL LYS ASP ASN GLY MET SEQRES 30 A 684 ILE PRO GLN ASN THR TRP ILE SER GLY LYS PRO TYR TRP SEQRES 31 A 684 THR GLY ILE GLN LEU ASP GLU GLN ALA ASP PRO ILE ILE SEQRES 32 A 684 LEU SER TYR ARG LEU LYS ARG TYR ASP LEU TYR ASP SER SEQRES 33 A 684 LEU VAL LYS PRO LEU ALA ASP PHE ILE ILE LYS ILE GLY SEQRES 34 A 684 PRO LYS THR GLY GLN GLU ARG TRP GLU GLU ILE GLY GLY SEQRES 35 A 684 TYR SER PRO ALA THR MET ALA ALA GLU VAL ALA GLY LEU SEQRES 36 A 684 THR CYS ALA ALA TYR ILE ALA GLU GLN ASN LYS ASP TYR SEQRES 37 A 684 GLU SER ALA GLN LYS TYR GLN GLU LYS ALA ASP ASN TRP SEQRES 38 A 684 GLN LYS LEU ILE ASP ASN LEU THR TYR THR GLU ASN GLY SEQRES 39 A 684 PRO LEU GLY ASN GLY GLN TYR TYR ILE ARG ILE ALA GLY SEQRES 40 A 684 LEU SER ASP PRO ASP ALA ASP PHE MET ILE ASN ILE ALA SEQRES 41 A 684 ASN GLY GLY GLY VAL TYR ASP GLN LYS GLU ILE VAL ASP SEQRES 42 A 684 PRO SER PHE LEU GLU LEU VAL ARG LEU GLY VAL LYS SER SEQRES 43 A 684 ALA ASP ASP PRO LYS ILE LEU ASN THR LEU LYS VAL VAL SEQRES 44 A 684 ASP SER THR ILE LYS VAL ASP THR PRO LYS GLY PRO SER SEQRES 45 A 684 TRP TYR ARG TYR ASN HIS ASP GLY TYR GLY GLU PRO SER SEQRES 46 A 684 LYS THR GLU LEU TYR HIS GLY ALA GLY LYS GLY ARG LEU SEQRES 47 A 684 TRP PRO LEU LEU THR GLY GLU ARG GLY MET TYR GLU ILE SEQRES 48 A 684 ALA ALA GLY LYS ASP ALA THR PRO TYR VAL LYS ALA MET SEQRES 49 A 684 GLU LYS PHE ALA ASN GLU GLY GLY ILE ILE SER GLU GLN SEQRES 50 A 684 VAL TRP GLU ASP THR GLY LEU PRO THR ASP SER ALA SER SEQRES 51 A 684 PRO LEU ASN TRP ALA HIS ALA GLU TYR VAL ILE LEU PHE SEQRES 52 A 684 ALA SER ASN ILE GLU HIS LYS VAL LEU ASP MET PRO ASP SEQRES 53 A 684 ILE VAL TYR LYS ARG TYR VAL ALA SEQRES 1 B 684 VAL LEU SER GLY CYS SER ASN ASN VAL SER SER ILE LYS SEQRES 2 B 684 ILE ASP ARG PHE ASN ASN ILE SER ALA VAL ASN GLY PRO SEQRES 3 B 684 GLY GLU GLU ASP THR TRP ALA SER ALA GLN LYS GLN GLY SEQRES 4 B 684 VAL GLY THR ALA ASN ASN TYR VAL SER LYS VAL TRP PHE SEQRES 5 B 684 THR LEU ALA ASN GLY ALA ILE SER GLU VAL TYR TYR PRO SEQRES 6 B 684 THR ILE ASP THR ALA ASP VAL LYS GLU ILE LYS PHE ILE SEQRES 7 B 684 VAL THR ASP GLY LYS SER PHE VAL PRO ASP GLU THR LYS SEQRES 8 B 684 ASP ALA ILE SER LYS VAL GLU LYS PHE THR ASP LYS SER SEQRES 9 B 684 LEU GLY TYR LYS LEU VAL ASN THR ASP LYS LYS GLY ARG SEQRES 10 B 684 TYR ARG ILE THR LYS ASP ILE PHE THR ASP VAL LYS ARG SEQRES 11 B 684 ASN SER LEU ILE MET LYS ALA LYS PHE GLU ALA LEU GLU SEQRES 12 B 684 GLY SER ILE HIS ASP TYR LYS LEU TYR LEU ALA TYR ASP SEQRES 13 B 684 PRO HIS ILE LYS ASN GLN GLY SER TYR ASN GLU GLY TYR SEQRES 14 B 684 VAL ILE LYS ALA ASN ASN ASN GLU MET LEU MET ALA LYS SEQRES 15 B 684 ARG ASP ASN VAL TYR THR ALA LEU SER SER ASN ILE GLY SEQRES 16 B 684 TRP LYS GLY TYR SER ILE GLY TYR TYR LYS VAL ASN ASP SEQRES 17 B 684 ILE MET THR ASP LEU ASP GLU ASN LYS GLN MET THR LYS SEQRES 18 B 684 HIS TYR ASP SER ALA ARG GLY ASN ILE ILE GLU GLY ALA SEQRES 19 B 684 GLU ILE ASP LEU THR LYS ASN SER GLU PHE GLU ILE VAL SEQRES 20 B 684 LEU SER PHE GLY GLN SER ASP SER GLU ALA ALA LYS THR SEQRES 21 B 684 ALA LEU GLU THR LEU GLY GLU ASP TYR ASN ASN LEU LYS SEQRES 22 B 684 ASN ASN TYR ILE ASP GLU TRP THR LYS TYR CYS ASN THR SEQRES 23 B 684 LEU ASN ASN PHE ASN GLY LYS ALA ASN SER LEU TYR TYR SEQRES 24 B 684 ASN SER MET MET ILE LEU LYS ALA SER GLU ASP LYS THR SEQRES 25 B 684 ASN LYS GLY ALA TYR ILE ALA SER LEU SER ILE PRO TRP SEQRES 26 B 684 GLY ASP GLY GLN ARG ASP ASP ASN THR GLY GLY TYR HIS SEQRES 27 B 684 LEU VAL TRP SER ARG ASP LEU TYR HIS VAL ALA ASN ALA SEQRES 28 B 684 PHE ILE ALA ALA GLY ASP VAL ASP SER ALA ASN ARG SER SEQRES 29 B 684 LEU ASP TYR LEU ALA LYS VAL VAL LYS ASP ASN GLY MET SEQRES 30 B 684 ILE PRO GLN ASN THR TRP ILE SER GLY LYS PRO TYR TRP SEQRES 31 B 684 THR GLY ILE GLN LEU ASP GLU GLN ALA ASP PRO ILE ILE SEQRES 32 B 684 LEU SER TYR ARG LEU LYS ARG TYR ASP LEU TYR ASP SER SEQRES 33 B 684 LEU VAL LYS PRO LEU ALA ASP PHE ILE ILE LYS ILE GLY SEQRES 34 B 684 PRO LYS THR GLY GLN GLU ARG TRP GLU GLU ILE GLY GLY SEQRES 35 B 684 TYR SER PRO ALA THR MET ALA ALA GLU VAL ALA GLY LEU SEQRES 36 B 684 THR CYS ALA ALA TYR ILE ALA GLU GLN ASN LYS ASP TYR SEQRES 37 B 684 GLU SER ALA GLN LYS TYR GLN GLU LYS ALA ASP ASN TRP SEQRES 38 B 684 GLN LYS LEU ILE ASP ASN LEU THR TYR THR GLU ASN GLY SEQRES 39 B 684 PRO LEU GLY ASN GLY GLN TYR TYR ILE ARG ILE ALA GLY SEQRES 40 B 684 LEU SER ASP PRO ASP ALA ASP PHE MET ILE ASN ILE ALA SEQRES 41 B 684 ASN GLY GLY GLY VAL TYR ASP GLN LYS GLU ILE VAL ASP SEQRES 42 B 684 PRO SER PHE LEU GLU LEU VAL ARG LEU GLY VAL LYS SER SEQRES 43 B 684 ALA ASP ASP PRO LYS ILE LEU ASN THR LEU LYS VAL VAL SEQRES 44 B 684 ASP SER THR ILE LYS VAL ASP THR PRO LYS GLY PRO SER SEQRES 45 B 684 TRP TYR ARG TYR ASN HIS ASP GLY TYR GLY GLU PRO SER SEQRES 46 B 684 LYS THR GLU LEU TYR HIS GLY ALA GLY LYS GLY ARG LEU SEQRES 47 B 684 TRP PRO LEU LEU THR GLY GLU ARG GLY MET TYR GLU ILE SEQRES 48 B 684 ALA ALA GLY LYS ASP ALA THR PRO TYR VAL LYS ALA MET SEQRES 49 B 684 GLU LYS PHE ALA ASN GLU GLY GLY ILE ILE SER GLU GLN SEQRES 50 B 684 VAL TRP GLU ASP THR GLY LEU PRO THR ASP SER ALA SER SEQRES 51 B 684 PRO LEU ASN TRP ALA HIS ALA GLU TYR VAL ILE LEU PHE SEQRES 52 B 684 ALA SER ASN ILE GLU HIS LYS VAL LEU ASP MET PRO ASP SEQRES 53 B 684 ILE VAL TYR LYS ARG TYR VAL ALA
HET SO4 A 950 5 HET SO4 B 951 5
HETNAM SO4 SULFATE ION
FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *908(H2 O)
HELIX 1 1 ASP A 88 ASP A 92 1 5 HELIX 2 2 SER A 145 TYR A 149 5 5 HELIX 3 3 ASP A 208 LYS A 217 1 10 HELIX 4 4 SER A 253 GLU A 267 1 15 HELIX 5 5 ASP A 268 ASN A 285 1 18 HELIX 6 6 ASN A 295 ALA A 307 1 13 HELIX 7 7 TRP A 325 GLN A 329 5 5 HELIX 8 8 GLY A 335 LEU A 339 5 5 HELIX 9 9 TRP A 341 GLY A 356 1 16 HELIX 10 10 ASP A 357 GLY A 376 1 20 HELIX 11 11 GLN A 394 LEU A 408 1 15 HELIX 12 12 ARG A 410 TYR A 414 5 5 HELIX 13 13 LEU A 417 GLY A 429 1 13 HELIX 14 14 SER A 444 ASN A 465 1 22 HELIX 15 15 ASP A 467 THR A 489 1 23 HELIX 16 16 LYS A 529 ILE A 531 5 3 HELIX 17 17 ASP A 533 PHE A 536 5 4 HELIX 18 18 LEU A 537 LEU A 542 1 6 HELIX 19 19 ASP A 549 ILE A 563 1 15 HELIX 20 20 TRP A 599 ALA A 613 1 15 HELIX 21 21 ALA A 617 ALA A 628 1 12 HELIX 22 22 LEU A 652 HIS A 669 1 18 HELIX 23 23 PRO A 675 VAL A 683 1 9 HELIX 24 24 ASP B 88 ASP B 92 1 5 HELIX 25 25 SER B 145 TYR B 149 5 5 HELIX 26 26 ASP B 208 LYS B 217 1 10 HELIX 27 27 SER B 253 GLU B 267 1 15 HELIX 28 28 ASP B 268 ASN B 285 1 18 HELIX 29 29 ASN B 295 ALA B 307 1 13 HELIX 30 30 TRP B 325 GLN B 329 5 5 HELIX 31 31 TRP B 341 GLY B 356 1 16 HELIX 32 32 ASP B 357 GLY B 376 1 20 HELIX 33 33 GLN B 394 LEU B 408 1 15 HELIX 34 34 ARG B 410 TYR B 414 5 5 HELIX 35 35 LEU B 417 GLY B 429 1 13 HELIX 36 36 SER B 444 ASN B 465 1 22 HELIX 37 37 ASP B 467 THR B 489 1 23 HELIX 38 38 LYS B 529 ILE B 531 5 3 HELIX 39 39 ASP B 533 PHE B 536 5 4 HELIX 40 40 LEU B 537 LEU B 542 1 6 HELIX 41 41 ASP B 549 ILE B 563 1 15 HELIX 42 42 TRP B 599 ALA B 613 1 15 HELIX 43 43 ALA B 617 ALA B 628 1 12 HELIX 44 44 LEU B 652 HIS B 669 1 18 HELIX 45 45 PRO B 675 VAL B 683 1 9
SHEET 1 A 9 ALA A 93 LYS A 99 0 SHEET 2 A 9 TYR A 107 ASP A 113 -1 O LYS A 108 N GLU A 98 SHEET 3 A 9 TYR A 118 THR A 126 -1 O ILE A 120 N ASN A 111 SHEET 4 A 9 SER A 132 ALA A 141 -1 O ILE A 134 N PHE A 125 SHEET 5 A 9 GLU A 243 GLY A 251 -1 O LEU A 248 N LEU A 133 SHEET 6 A 9 VAL A 186 SER A 192 -1 N TYR A 187 O GLY A 251 SHEET 7 A 9 ASN A 176 ARG A 183 -1 N LEU A 179 O LEU A 190 SHEET 8 A 9 ASN A 166 ALA A 173 -1 N TYR A 169 O MET A 180 SHEET 9 A 9 ILE A 14 ARG A 16 -1 N ASP A 15 O LYS A 172 SHEET 1 B 9 ALA A 93 LYS A 99 0 SHEET 2 B 9 TYR A 107 ASP A 113 -1 O LYS A 108 N GLU A 98 SHEET 3 B 9 TYR A 118 THR A 126 -1 O ILE A 120 N ASN A 111 SHEET 4 B 9 SER A 132 ALA A 141 -1 O ILE A 134 N PHE A 125 SHEET 5 B 9 GLU A 243 GLY A 251 -1 O LEU A 248 N LEU A 133 SHEET 6 B 9 VAL A 186 SER A 192 -1 N TYR A 187 O GLY A 251 SHEET 7 B 9 ASN A 176 ARG A 183 -1 N LEU A 179 O LEU A 190 SHEET 8 B 9 ASN A 166 ALA A 173 -1 N TYR A 169 O MET A 180 SHEET 9 B 9 SER A 225 GLY A 228 -1 O ALA A 226 N GLY A 168 SHEET 1 C 7 GLY A 39 THR A 42 0 SHEET 2 C 7 TRP A 51 ALA A 55 -1 O LEU A 54 N GLY A 39 SHEET 3 C 7 ALA A 58 TYR A 63 -1 O TYR A 63 N TRP A 51 SHEET 4 C 7 ALA A 70 THR A 80 -1 O ASP A 71 N VAL A 62 SHEET 5 C 7 LYS A 150 PRO A 157 -1 O TYR A 152 N ILE A 78 SHEET 6 C 7 ILE A 230 ILE A 236 -1 O ALA A 234 N LEU A 153 SHEET 7 C 7 GLY A 198 TYR A 203 -1 N SER A 200 O GLY A 233 SHEET 1 D 2 TYR A 490 THR A 491 0 SHEET 2 D 2 TYR A 501 TYR A 502 -1 O TYR A 501 N THR A 491 SHEET 1 E 2 MET A 516 ILE A 519 0 SHEET 2 E 2 GLY A 524 ASP A 527 -1 O TYR A 526 N ILE A 517 SHEET 1 F 2 LYS A 564 THR A 567 0 SHEET 2 F 2 GLY A 570 TRP A 573 -1 O SER A 572 N VAL A 565 SHEET 1 G 9 ALA B 93 LYS B 99 0 SHEET 2 G 9 TYR B 107 ASP B 113 -1 O LYS B 108 N GLU B 98 SHEET 3 G 9 TYR B 118 THR B 126 -1 O ILE B 120 N ASN B 111 SHEET 4 G 9 SER B 132 ALA B 141 -1 O ILE B 134 N PHE B 125 SHEET 5 G 9 GLU B 243 GLY B 251 -1 O LEU B 248 N LEU B 133 SHEET 6 G 9 VAL B 186 SER B 192 -1 N TYR B 187 O GLY B 251 SHEET 7 G 9 ASN B 176 ARG B 183 -1 N ALA B 181 O THR B 188 SHEET 8 G 9 ASN B 166 ALA B 173 -1 N TYR B 169 O MET B 180 SHEET 9 G 9 ILE B 14 PHE B 17 -1 N ASP B 15 O LYS B 172 SHEET 1 H 9 ALA B 93 LYS B 99 0 SHEET 2 H 9 TYR B 107 ASP B 113 -1 O LYS B 108 N GLU B 98 SHEET 3 H 9 TYR B 118 THR B 126 -1 O ILE B 120 N ASN B 111 SHEET 4 H 9 SER B 132 ALA B 141 -1 O ILE B 134 N PHE B 125 SHEET 5 H 9 GLU B 243 GLY B 251 -1 O LEU B 248 N LEU B 133 SHEET 6 H 9 VAL B 186 SER B 192 -1 N TYR B 187 O GLY B 251 SHEET 7 H 9 ASN B 176 ARG B 183 -1 N ALA B 181 O THR B 188 SHEET 8 H 9 ASN B 166 ALA B 173 -1 N TYR B 169 O MET B 180 SHEET 9 H 9 SER B 225 GLY B 228 -1 O ALA B 226 N GLY B 168 SHEET 1 I 7 GLY B 39 THR B 42 0 SHEET 2 I 7 TRP B 51 ALA B 55 -1 O LEU B 54 N GLY B 39 SHEET 3 I 7 ALA B 58 TYR B 63 -1 O ALA B 58 N ALA B 55 SHEET 4 I 7 ALA B 70 THR B 80 -1 O ASP B 71 N VAL B 62 SHEET 5 I 7 LYS B 150 PRO B 157 -1 O TYR B 152 N ILE B 78 SHEET 6 I 7 ILE B 230 ILE B 236 -1 O GLU B 232 N TYR B 155 SHEET 7 I 7 GLY B 198 TYR B 203 -1 N SER B 200 O GLY B 233 SHEET 1 J 2 TYR B 490 THR B 491 0 SHEET 2 J 2 TYR B 501 TYR B 502 -1 O TYR B 501 N THR B 491 SHEET 1 K 2 MET B 516 ILE B 519 0 SHEET 2 K 2 GLY B 524 ASP B 527 -1 O GLY B 524 N ILE B 519 SHEET 1 L 2 LYS B 564 THR B 567 0 SHEET 2 L 2 GLY B 570 TRP B 573 -1 O SER B 572 N VAL B 565
CISPEP 1 GLY A 25 PRO A 26 0 0.07 CISPEP 2 TYR A 64 PRO A 65 0 -0.01 CISPEP 3 GLY A 429 PRO A 430 0 0.23 CISPEP 4 SER A 650 PRO A 651 0 -1.76 CISPEP 5 GLY B 25 PRO B 26 0 0.14 CISPEP 6 TYR B 64 PRO B 65 0 -0.14 CISPEP 7 GLY B 429 PRO B 430 0 0.06 CISPEP 8 SER B 650 PRO B 651 0 -0.03
SITE 1 AC1 6 LYS A 431 TYR A 443 GLY A 507 LEU A 508 SITE 2 AC1 6 SER A 509 HOH A1113 SITE 1 AC2 6 LYS B 431 TYR B 443 GLY B 507 LEU B 508 SITE 2 AC2 6 SER B 509 HOH B1400
CRYST1 81.186 102.513 164.820 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012317 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009755 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006067 0.00000