10 20 30 40 50 60 70 80 1LDM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 25-NOV-87 1LDM
TITLE REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE DEHYDROGENASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: M4 LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SQUALUS ACANTHIAS; SOURCE 3 ORGANISM_COMMON: SPINY DOGFISH; SOURCE 4 ORGANISM_TAXID: 7797
KEYWDS OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.P.GRIFFITH,M.G.ROSSMANN
REVDAT 6 22-OCT-14 1LDM 1 HEADER LINK REVDAT 5 08-MAY-13 1LDM 1 REMARK MTRIX1 MTRIX2 MTRIX3 REVDAT 4 25-AUG-09 1LDM 1 SOURCE REVDAT 3 24-FEB-09 1LDM 1 VERSN REVDAT 2 15-APR-90 1LDM 1 FORMUL REVDAT 1 12-JUL-89 1LDM 0
JRNL AUTH C.ABAD-ZAPATERO,J.P.GRIFFITH,J.L.SUSSMAN,M.G.ROSSMANN JRNL TITL REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE JRNL TITL 2 DEHYDROGENASE. JRNL REF J.MOL.BIOL. V. 198 445 1987 JRNL REFN ISSN 0022-2836 JRNL PMID 3430615 JRNL DOI 10.1016/0022-2836(87)90293-2
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.WHITE,M.L.HACKERT,M.BUEHNER,M.J.ADAMS,G.C.FORD, REMARK 1 AUTH 2 P.J.LENTZJUNIOR,I.E.SMILEY,S.J.STEINDEL,M.G.ROSSMANN REMARK 1 TITL A COMPARISON OF THE STRUCTURES OF APO DOGFISH M4 LACTATE REMARK 1 TITL 2 DEHYDROGENASE AND ITS TERNARY COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 102 759 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.EVENTOFF,M.G.ROSSMANN,S.S.TAYLOR,H.-J.TORFF,H.MEYER, REMARK 1 AUTH 2 W.KEIL,H.-H.KILTZ REMARK 1 TITL STRUCTURAL ADAPTATIONS OF LACTATE DEHYDROGENASE ISOZYMES REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 74 2677 1977 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.WHITE,M.G.ROSSMANN,G.C.FORD REMARK 1 TITL A 5 ANGSTROMS X-RAY DIFFRACTION STUDY OF COENZYME-DEFICIENT REMARK 1 TITL 2 LACTATE DEHYDROGENASE,NAD-PYRUVATE TERNARY COMPLEX REMARK 1 REF J.MOL.BIOL. V. 98 259 1975 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH W.EVENTOFF,M.L.HACKERT,S.J.STEINDEL,M.G.ROSSMANN REMARK 1 TITL A STRUCTURAL COMPARISON OF PORCINE B4 AND DOGFISH A4 REMARK 1 TITL 2 ISOZYMES OF LACTATE DEHYDROGENASE REMARK 1 EDIT C.L.MARKERT REMARK 1 REF ISOZYMES-MOLECULAR STRUCTURE V. 1 137 1975 REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 5 REMARK 1 AUTH J.J.HOLBROOK,A.LILJAS,S.J.STEINDEL,M.G.ROSSMANN REMARK 1 TITL LACTATE DEHYDROGENASE REMARK 1 EDIT P.D.BOYER REMARK 1 REF THE ENZYMES,THIRD EDITION V. 11 191 1975 REMARK 1 PUBL ACADEMIC PRESS,NEW YORK REMARK 1 REFN REMARK 1 REFERENCE 6 REMARK 1 AUTH A.LILJAS,M.G.ROSSMANN REMARK 1 TITL X-RAY STUDIES OF PROTEIN INTERACTIONS REMARK 1 REF ANNU.REV.BIOCHEM. V. 43 475 1974 REMARK 1 REFN ISSN 0066-4154 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.G.ROSSMANN,D.MORAS,K.W.OLSEN REMARK 1 TITL CHEMICAL AND BIOLOGICAL EVOLUTION OF A NUCLEOTIDE BINDING REMARK 1 TITL 2 PROTEIN REMARK 1 REF NATURE V. 250 194 1974 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.G.ROSSMANN,A.LILJAS REMARK 1 TITL RECOGNITION OF STRUCTURAL DOMAINS IN GLOBULAR PROTEINS REMARK 1 REF J.MOL.BIOL. V. 85 177 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 9 REMARK 1 AUTH M.J.ADAMS,G.C.FORD,A.LILJAS,M.G.ROSSMANN REMARK 1 TITL ATOMIC CO-ORDINATES FOR DOGFISH M4 APO-LACTATE DEHYDROGENASE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 53 46 1973 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 10 REMARK 1 AUTH M.J.ADAMS,M.BUEHNER,K.CHANDRASEKHAR,G.C.FORD,M.L.HACKERT, REMARK 1 AUTH 2 A.LILJAS,M.G.ROSSMANN,I.E.SMILEY,W.S.ALLISON,J.EVERSE, REMARK 1 AUTH 3 N.O.KAPLAN,S.S.TAYLOR REMARK 1 TITL STRUCTURE-FUNCTION RELATIONSHIPS IN LACTATE DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 70 1968 1973 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 11 REMARK 1 AUTH S.S.TAYLOR,S.S.OXLEY,W.S.ALLISON,N.O.KAPLAN REMARK 1 TITL AMINO-ACID SEQUENCE OF DOGFISH M4 LACTATE DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 70 1790 1973 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 12 REMARK 1 AUTH M.G.ROSSMANN,M.J.ADAMS,M.BUEHNER,G.C.FORD,M.L.HACKERT, REMARK 1 AUTH 2 A.LILJAS,S.T.RAO,L.J.BANASZAK,E.HILL,D.TSERNOGLOU,L.WEBB REMARK 1 TITL MOLECULAR SYMMETRY AXES AND SUBUNIT INTERFACES IN CERTAIN REMARK 1 TITL 2 DEHYDROGENASES REMARK 1 REF J.MOL.BIOL. V. 76 533 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 13 REMARK 1 AUTH M.J.ADAMS,A.LILJAS,M.G.ROSSMANN REMARK 1 TITL FUNCTIONAL ANION BINDING SITES IN DOGFISH M4 LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 76 519 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 14 REMARK 1 AUTH A.MCPHERSONJUNIOR REMARK 1 TITL BINDING OF OXAMATE TO THE APOENZYME OF DOGFISH M4 LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 76 528 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 15 REMARK 1 AUTH K.CHANDRASEKHAR,A.MCPHERSONJUNIOR,M.J.ADAMS,M.G.ROSSMANN REMARK 1 TITL CONFORMATION OF COENZYME FRAGMENTS WHEN BOUND TO LACTATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 76 503 1973 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 16 REMARK 1 AUTH I.E.SMILEY,R.KOEKOEK,M.J.ADAMS,M.G.ROSSMANN REMARK 1 TITL THE 5 ANGSTROMS RESOLUTION STRUCTURE OF AN ABORTIVE TERNARY REMARK 1 TITL 2 COMPLEX OF LACTATE DEHYDROGENASE AND ITS COMPARISON WITH THE REMARK 1 TITL 3 APO-ENZYME REMARK 1 REF J.MOL.BIOL. V. 55 467 1971 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 17 REMARK 1 AUTH M.J.ADAMS,G.C.FORD,R.KOEKOEK,P.J.LENTZJUNIOR, REMARK 1 AUTH 2 A.MCPHERSONJUNIOR,M.G.ROSSMANN,I.E.SMILEY,R.W.SCHEVITZ, REMARK 1 AUTH 3 A.J.WONACOTT REMARK 1 TITL STRUCTURE OF LACTATE DEHYDROGENASE AT 2.8 ANGSTROMS REMARK 1 TITL 2 RESOLUTION REMARK 1 REF NATURE V. 227 1098 1970 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 18 REMARK 1 AUTH M.J.ADAMS,D.J.HAAS,B.A.JEFFERY,A.MCPHERSONJUNIOR, REMARK 1 AUTH 2 H.L.MERMALL,M.G.ROSSMANN,R.W.SCHEVITZ,A.J.WONACOTT REMARK 1 TITL LOW RESOLUTION STUDY OF CRYSTALLINE L-LACTATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 41 159 1969 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 19 REMARK 1 AUTH M.G.ROSSMANN,B.A.JEFFERY,P.MAIN,S.WARREN REMARK 1 TITL THE CRYSTAL STRUCTURE OF LACTIC DEHYDROGENASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 57 515 1967 REMARK 1 REFN ISSN 0027-8424
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; 0.030 REMARK 3 ANGLE DISTANCE (A) : 0.048 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.213 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.267 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.260 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 SPACE GROUP C 4 21 2 (WHICH, MORE PROPERLY, SHOULD BE NAMED REMARK 3 C 4 2 21) IS A NON-STANDARD REPRESENTATION OF SPACE GROUP REMARK 3 P 4 21 2. IN THIS CASE THE AXES OF THE UNIT CELL ARE REMARK 3 CONSIDERED TO BE LEFT-HANDED.
REMARK 4 REMARK 4 1LDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z REMARK 290 10555 -X+1/2,-Y+1/2,Z REMARK 290 11555 -Y,X,Z REMARK 290 12555 Y,-X,Z REMARK 290 13555 -X,Y,-Z REMARK 290 14555 X,-Y,-Z REMARK 290 15555 Y+1/2,X+1/2,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 -1.414170 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 1.000000 1.000000 47.55112 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 4 -1.414170 -1.000000 -1.000000 47.55112 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 5 1.414170 0.000000 1.000000 47.55112 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.55112 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 1.414170 1.000000 1.000000 0.00000 REMARK 290 SMTRY1 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.55112 REMARK 290 SMTRY1 10 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 -1.414170 0.000000 -1.000000 47.55112 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 1.000000 1.000000 0.00000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 12 -1.414170 -1.000000 -1.000000 0.00000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 -1.414170 -1.000000 -2.000000 0.00000 REMARK 290 SMTRY3 13 1.414170 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 1.414170 1.000000 2.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 1.414170 1.000000 1.000000 47.55112 REMARK 290 SMTRY1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 -1.000000 -1.000000 47.55112 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: NON-CRYSTALLOGRAPHIC SYMMETRY ELEMENTS CORRESPONDING TO THE REMARK 300 THREE ORTHOGONAL MOLECULAR SYMMETRY AXES ARE PRESENTED ON REMARK 300 THE *MTRIX* RECORDS BELOW. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D2).
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 345 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 348 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A 356 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 363 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH A 365 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A 368 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A 378 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 385 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A 397 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A 398 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A 400 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A 401 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH A 402 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 404 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A 408 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 417 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 422 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH A 424 DISTANCE = 5.78 ANGSTROMS REMARK 525 HOH A 426 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A 427 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH A 430 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A 431 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A 434 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 436 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 438 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 439 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 440 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH A 441 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH A 442 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 443 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A 454 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 456 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 462 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 464 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A 470 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 472 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A 473 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 474 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH A 475 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH A 476 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 483 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A 485 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A 486 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH A 487 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 488 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A 489 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH A 494 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A 495 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A 506 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH A 515 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 516 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH A 533 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A 551 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 571 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH A 574 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH A 575 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A 577 DISTANCE = 5.40 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 332
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUES IN THIS ENTRY ARE NUMBERED SEQUENTIALLY FROM REMARK 999 1 - 329. SEE THE PAPER CITED AS REFERENCE 1 ABOVE FOR AN REMARK 999 EXPLANATION OF THE NUMBERING SYSTEM USED IN SOME EARLIER REMARK 999 LDH ENTRIES.
DBREF 1LDM A 1 329 UNP P00341 LDHA_SQUAC 1 329
SEQADV 1LDM ASN A 205 UNP P00341 TRP 205 CONFLICT SEQADV 1LDM VAL A 206 UNP P00341 ASN 206 CONFLICT SEQADV 1LDM SER A 208 UNP P00341 LEU 208 CONFLICT SEQADV 1LDM ILE A 209 UNP P00341 LYS 209 CONFLICT SEQADV 1LDM LYS A 210 UNP P00341 GLU 210 CONFLICT SEQADV 1LDM LEU A 214 UNP P00341 GLU 214 CONFLICT SEQADV 1LDM ASP A 215 UNP P00341 LEU 215 CONFLICT SEQADV 1LDM ASN A 308 UNP P00341 ASP 308 CONFLICT
SEQRES 1 A 329 ALA THR LEU LYS ASP LYS LEU ILE GLY HIS LEU ALA THR SEQRES 2 A 329 SER GLN GLU PRO ARG SER TYR ASN LYS ILE THR VAL VAL SEQRES 3 A 329 GLY VAL GLY ALA VAL GLY MET ALA CYS ALA ILE SER ILE SEQRES 4 A 329 LEU MET LYS ASP LEU ALA ASP GLU VAL ALA LEU VAL ASP SEQRES 5 A 329 VAL MET GLU ASP LYS LEU LYS GLY GLU MET MET ASP LEU SEQRES 6 A 329 GLN HIS GLY SER LEU PHE LEU HIS THR ALA LYS ILE VAL SEQRES 7 A 329 SER GLY LYS ASP TYR SER VAL SER ALA GLY SER LYS LEU SEQRES 8 A 329 VAL VAL ILE THR ALA GLY ALA ARG GLN GLN GLU GLY GLU SEQRES 9 A 329 SER ARG LEU ASN LEU VAL GLN ARG ASN VAL ASN ILE PHE SEQRES 10 A 329 LYS PHE ILE ILE PRO ASN ILE VAL LYS HIS SER PRO ASP SEQRES 11 A 329 CYS ILE ILE LEU VAL VAL SER ASN PRO VAL ASP VAL LEU SEQRES 12 A 329 THR TYR VAL ALA TRP LYS LEU SER GLY LEU PRO MET HIS SEQRES 13 A 329 ARG ILE ILE GLY SER GLY CYS ASN LEU ASP SER ALA ARG SEQRES 14 A 329 PHE ARG TYR LEU MET GLY GLU ARG LEU GLY VAL HIS SER SEQRES 15 A 329 CYS SER CYS HIS GLY TRP VAL ILE GLY GLU HIS GLY ASP SEQRES 16 A 329 SER VAL PRO SER VAL TRP SER GLY MET ASN VAL ALA SER SEQRES 17 A 329 ILE LYS LEU HIS PRO LEU ASP GLY THR ASN LYS ASP LYS SEQRES 18 A 329 GLN ASP TRP LYS LYS LEU HIS LYS ASP VAL VAL ASP SER SEQRES 19 A 329 ALA TYR GLU VAL ILE LYS LEU LYS GLY TYR THR SER TRP SEQRES 20 A 329 ALA ILE GLY LEU SER VAL ALA ASP LEU ALA GLU THR ILE SEQRES 21 A 329 MET LYS ASN LEU CYS ARG VAL HIS PRO VAL SER THR MET SEQRES 22 A 329 VAL LYS ASP PHE TYR GLY ILE LYS ASP ASN VAL PHE LEU SEQRES 23 A 329 SER LEU PRO CYS VAL LEU ASN ASP HIS GLY ILE SER ASN SEQRES 24 A 329 ILE VAL LYS MET LYS LEU LYS PRO ASN GLU GLU GLN GLN SEQRES 25 A 329 LEU GLN LYS SER ALA THR THR LEU TRP ASP ILE GLN LYS SEQRES 26 A 329 ASP LEU LYS PHE
HET NAD A 330 44 HET OXM A 331 6 HET OXM A 332 6
HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM OXM OXAMIC ACID
FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 OXM 2(C2 H3 N O3) FORMUL 5 HOH *245(H2 O)
HELIX 1 AA THR A 2 ILE A 8 1 7 HELIX 2 AB GLY A 29 ASP A 43 1 15 HELIX 3 AC MET A 54 SER A 69 1 16 HELIX 4 AD GLY A 103 ILE A 121 13/10 HELIX 103-111 19 HELIX 5 AE PHE A 119 SER A 128 1CONTIGUOUS WITH HELIX AD 10 HELIX 6 A1F VAL A 140 GLY A 152 1SHORTER IN APO 13 HELIX 7 A2F CYS A 163 GLY A 179 13 H BONDS IN MIDDL ABSENT APO 17 HELIX 8 A1G TRP A 224 TYR A 236 13/10 H-BOND 234-237 13 HELIX 9 A2G VAL A 238 GLY A 243 5 6 HELIX 10 A3G ALA A 248 ASN A 263 13/10 H-BOND 248-251 16 HELIX 11 AH PRO A 307 ILE A 323 1 17
SHEET 1 SH1 6 LYS A 76 GLY A 80 0 SHEET 2 SH1 6 GLU A 47 VAL A 51 1 N LEU A 50 O VAL A 78 SHEET 3 SH1 6 ASN A 21 VAL A 26 1 N VAL A 25 O ALA A 49 SHEET 4 SH1 6 LYS A 90 ILE A 94 1 N VAL A 93 O THR A 24 SHEET 5 SH1 6 ILE A 132 VAL A 136 1 N LEU A 134 O VAL A 92 SHEET 6 SH1 6 ARG A 157 GLY A 160 1 N ILE A 159 O ILE A 133 SHEET 1 SH2 3 SER A 184 TRP A 188 0 SHEET 2 SH2 3 GLY A 203 VAL A 206 -1 N ASN A 205 O SER A 184 SHEET 3 SH2 3 ILE A 209 LEU A 211 -1 O ILE A 209 N VAL A 206 SHEET 1 SH3 3 LEU A 264 MET A 273 0 SHEET 2 SH3 3 ASN A 283 ASN A 293 -1 N CYS A 290 O VAL A 267 SHEET 3 SH3 3 HIS A 295 VAL A 301 -1 N ASN A 299 O CYS A 290
CISPEP 1 ASN A 138 PRO A 139 0 -2.95
SITE 1 AC1 38 VAL A 28 GLY A 29 ASP A 52 VAL A 53 SITE 2 AC1 38 MET A 54 GLU A 55 ASP A 56 LYS A 57 SITE 3 AC1 38 LEU A 58 LYS A 59 GLY A 60 GLU A 61 SITE 4 AC1 38 SER A 79 LYS A 81 ASP A 82 TYR A 83 SITE 5 AC1 38 THR A 95 ALA A 96 ALA A 98 ARG A 99 SITE 6 AC1 38 VAL A 136 SER A 137 ASN A 138 SER A 161 SITE 7 AC1 38 HIS A 193 LEU A 241 LYS A 242 TYR A 244 SITE 8 AC1 38 SER A 246 OXM A 331 HOH A 347 HOH A 353 SITE 9 AC1 38 HOH A 359 HOH A 373 HOH A 384 HOH A 493 SITE 10 AC1 38 HOH A 496 HOH A 497 SITE 1 AC2 4 ARG A 106 HIS A 193 ALA A 235 NAD A 330 SITE 1 AC3 7 GLN A 111 ARG A 171 HIS A 186 VAL A 291 SITE 2 AC3 7 HOH A 335 HOH A 424 HOH A 439
CRYST1 134.500 134.500 85.900 90.00 90.00 90.00 C 4 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007435 0.010515 0.010515 0.00000
SCALE2 0.007435 0.000000 0.010515 0.00000
SCALE3 -0.011641 0.000000 0.000000 0.00000