10 20 30 40 50 60 70 80 1LCD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION/DNA 25-MAR-93 1LCD
TITLE STRUCTURE OF THE COMPLEX OF LAC REPRESSOR HEADPIECE AND AN TITLE 2 11 BASE-PAIR HALF-OPERATOR DETERMINED BY NUCLEAR MAGNETIC TITLE 3 RESONANCE SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*GP*CP*G)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LAC REPRESSOR; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: LAC
KEYWDS GENE REGULATION/DNA
EXPDTA SOLUTION NMR
NUMMDL 3
AUTHOR V.P.CHUPRINA,J.A.C.RULLMANN,R.M.J.N.LAMERICHS,J.H.VAN BOOM, AUTHOR 2 R.BOELENS,R.KAPTEIN
REVDAT 3 24-FEB-09 1LCD 1 VERSN REVDAT 2 01-APR-03 1LCD 1 JRNL REVDAT 1 31-JAN-94 1LCD 0
JRNL AUTH V.P.CHUPRINA,J.A.RULLMANN,R.M.LAMERICHS, JRNL AUTH 2 J.H.VAN BOOM,R.BOELENS,R.KAPTEIN JRNL TITL STRUCTURE OF THE COMPLEX OF LAC REPRESSOR JRNL TITL 2 HEADPIECE AND AN 11 BASE-PAIR HALF-OPERATOR JRNL TITL 3 DETERMINED BY NUCLEAR MAGNETIC RESONANCE JRNL TITL 4 SPECTROSCOPY AND RESTRAINED MOLECULAR DYNAMICS. JRNL REF J.MOL.BIOL. V. 234 446 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8230225 JRNL DOI 10.1006/JMBI.1993.1598
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.M.J.N.LAMERICHS,R.BOELENS,G.A.VAN DER MAREL, REMARK 1 AUTH 2 J.H.VAN BOOM,R.KAPTEIN REMARK 1 TITL ASSIGNMENT OF THE 1H-NMR SPECTRUM OF A LAC REMARK 1 TITL 2 REPRESSOR HEADPIECE-OPERATOR COMPLEX IN H2O AND REMARK 1 TITL 3 IDENTIFICATION OF NOES. CONSEQUENCES FOR REMARK 1 TITL 4 PROTEIN-DNA INTERACTION REMARK 1 REF EUR.J.BIOCHEM. V. 194 629 1990 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.KAPTEIN,R.M.J.N.LAMERICHS,R.BOELENS, REMARK 1 AUTH 2 J.A.C.RULLMANN REMARK 1 TITL TWO-DIMENSIONAL NMR STUDY OF A PROTEIN-DNA REMARK 1 TITL 2 COMPLEX. LAC REPRESSOR HEADPIECE-OPERATOR REMARK 1 TITL 3 INTERACTION REMARK 1 REF BIOCHEM.PHARM. V. 40 89 1990 REMARK 1 REFN ISSN 0006-2952 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.M.J.N.LAMERICHS,R.BOELENS,G.A.VAN DER MAREL, REMARK 1 AUTH 2 J.H.VAN BOOM,R.KAPTEIN,F.BUCK,B.FERA,H.RUETERJANS REMARK 1 TITL 1H NMR STUDY OF A COMPLEX BETWEEN THE LAC REMARK 1 TITL 2 REPRESSOR HEADPIECE AND A 22 BASE PAIR SYMMETRIC REMARK 1 TITL 3 LAC OPERATOR REMARK 1 REF BIOCHEMISTRY V. 28 2985 1989 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.A.C.RULLMANN,R.BOELENS,R.KAPTEIN REMARK 1 TITL NMR BASED DOCKING STUDIES OF LAC REPRESSOR REMARK 1 TITL 2 HEADPIECE ON A LAC OPERATOR FRAGMENT REMARK 1 REF UCLA SYMP.MOL.CELL.BIOL., V. 95 11 1989 REMARK 1 REF 2 NEW SER. REMARK 1 REFN ISSN 0735-9543 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.BOELENS,R.M.J.N.LAMERICHS,J.A.C.RULLMANN, REMARK 1 AUTH 2 J.H.VAN BOOM,R.KAPTEIN REMARK 1 TITL THE INTERACTION OF LAC REPRESSOR HEADPIECE WITH REMARK 1 TITL 2 ITS OPERATOR: AN NMR VIEW REMARK 1 REF PROTEIN SEQ.DATA ANAL. V. 1 487 1988 REMARK 1 REFN ISSN 0931-9506 REMARK 1 REFERENCE 6 REMARK 1 AUTH J.DE VLIEG,R.M.SCHEEK,W.F.VAN GUNSTEREN, REMARK 1 AUTH 2 H.J.C.BERENDSEN,R.KAPTEIN,J.THOMASON REMARK 1 TITL COMBINED PROCEDURE OF DISTANCE GEOMETRY AND REMARK 1 TITL 2 RESTRAINED MOLECULAR DYNAMICS TECHNIQUES FOR REMARK 1 TITL 3 PROTEIN STRUCTURE DETERMINATION FROM NUCLEAR REMARK 1 TITL 4 MAGNETIC RESONANCE DATA: APPLICATION TO THE DNA REMARK 1 TITL 5 BINDING DOMAIN OF LAC REPRESSOR FROM ESCHERICHIA REMARK 1 TITL 6 COLI REMARK 1 REF PROTEINS V. 3 209 1988 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 7 REMARK 1 AUTH R.BOELENS,R.M.SCHEEK,R.M.J.N.LAMERICHS,J.DE VLIEG, REMARK 1 AUTH 2 J.H.VAN BOOM,R.KAPTEIN REMARK 1 TITL A TWO-DIMENSIONAL NMR STUDY OF THE COMPLEX OF LAC REMARK 1 TITL 2 REPRESSOR HEADPIECE WITH A 14 BASE PAIR LAC REMARK 1 TITL 3 OPERATOR FRAGMENT REMARK 1 REF NATO ASI SER.,SER.A V. 137 191 1987 REMARK 1 REFN ISSN 0161-0449 REMARK 1 REFERENCE 8 REMARK 1 AUTH R.BOELENS,R.M.SCHEEK,J.H.VAN BOOM,R.KAPTEIN REMARK 1 TITL COMPLEX OF LAC REPRESSOR HEADPIECE WITH A 14 BASE REMARK 1 TITL 2 PAIR LAC OPERATOR FRAGMENT STUDIED BY REMARK 1 TITL 3 TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE REMARK 1 REF J.MOL.BIOL. V. 193 213 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 9 REMARK 1 AUTH J.DE VLIEG,R.BOELENS,R.M.SCHEEK,R.KAPTEIN, REMARK 1 AUTH 2 W.F.VAN GUNSTEREN REMARK 1 TITL RESTRAINED MOLECULAR DYNAMICS PROCEDURE FOR REMARK 1 TITL 2 PROTEIN TERTIARY STRUCTURE DETERMINATION FROM NMR REMARK 1 TITL 3 DATA: A LAC REPRESSOR HEADPIECE STRUCTURE BASED ON REMARK 1 TITL 4 INFORMATION ON J-COUPLING AND FROM PRESENCE AND REMARK 1 TITL 5 ABSENCE OF NOES REMARK 1 REF ISR.J.CHEM. V. 27 181 1986 REMARK 1 REFN ISSN 0021-2148
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1LCD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 3 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DA B 1 C5 DA B 1 N7 -0.052 REMARK 500 1 DA B 1 N9 DA B 1 C4 -0.041 REMARK 500 1 DA B 2 C5 DA B 2 N7 -0.060 REMARK 500 1 DA B 2 N9 DA B 2 C4 -0.051 REMARK 500 1 DT B 3 C5 DT B 3 C6 0.055 REMARK 500 1 DT B 3 C6 DT B 3 N1 0.042 REMARK 500 1 DT B 4 C5 DT B 4 C6 0.062 REMARK 500 1 DG B 5 C5 DG B 5 N7 -0.051 REMARK 500 1 DG B 5 N7 DG B 5 C8 0.040 REMARK 500 1 DG B 5 C8 DG B 5 N9 -0.053 REMARK 500 1 DG B 5 N9 DG B 5 C4 -0.056 REMARK 500 1 DG B 7 C5 DG B 7 N7 -0.050 REMARK 500 1 DG B 7 C8 DG B 7 N9 -0.050 REMARK 500 1 DG B 7 N9 DG B 7 C4 -0.055 REMARK 500 1 DA B 8 C5 DA B 8 N7 -0.070 REMARK 500 1 DA B 8 N9 DA B 8 C4 -0.042 REMARK 500 1 DG B 9 C5 DG B 9 N7 -0.063 REMARK 500 1 DG B 9 C8 DG B 9 N9 -0.052 REMARK 500 1 DC B 10 C5 DC B 10 C6 0.064 REMARK 500 1 DG B 11 C5 DG B 11 N7 -0.052 REMARK 500 1 DG B 11 N9 DG B 11 C4 -0.051 REMARK 500 1 DC C 1 N1 DC C 1 C6 0.041 REMARK 500 1 DC C 1 C5 DC C 1 C6 0.052 REMARK 500 1 DG C 2 C5 DG C 2 N7 -0.043 REMARK 500 1 DC C 3 N1 DC C 3 C6 0.043 REMARK 500 1 DT C 4 C5 DT C 4 C6 0.064 REMARK 500 1 DC C 5 N1 DC C 5 C6 0.048 REMARK 500 1 DC C 5 C5 DC C 5 C6 0.057 REMARK 500 1 DA C 6 C5 DA C 6 N7 -0.058 REMARK 500 1 DA C 6 C8 DA C 6 N9 -0.054 REMARK 500 1 DA C 6 N9 DA C 6 C4 -0.045 REMARK 500 1 DC C 7 N1 DC C 7 C6 0.043 REMARK 500 1 DC C 7 C5 DC C 7 C6 0.061 REMARK 500 1 DA C 8 C5 DA C 8 N7 -0.048 REMARK 500 1 DA C 8 C8 DA C 8 N9 -0.051 REMARK 500 1 DA C 8 N9 DA C 8 C4 -0.040 REMARK 500 1 DA C 9 C5 DA C 9 N7 -0.059 REMARK 500 1 DA C 9 C8 DA C 9 N9 -0.050 REMARK 500 1 DA C 9 N9 DA C 9 C4 -0.046 REMARK 500 1 DT C 10 C5 DT C 10 C6 0.049 REMARK 500 1 DT C 10 C5 DT C 10 C7 0.036 REMARK 500 1 DT C 11 C5 DT C 11 C6 0.051 REMARK 500 2 DA B 1 C5 DA B 1 N7 -0.051 REMARK 500 2 DA B 1 C8 DA B 1 N9 -0.060 REMARK 500 2 DA B 1 N9 DA B 1 C4 -0.048 REMARK 500 2 DA B 2 C5 DA B 2 N7 -0.049 REMARK 500 2 DA B 2 C8 DA B 2 N9 -0.053 REMARK 500 2 DA B 2 N9 DA B 2 C4 -0.054 REMARK 500 2 DT B 3 C5 DT B 3 C6 0.058 REMARK 500 2 DT B 3 C5 DT B 3 C7 0.038 REMARK 500 REMARK 500 THIS ENTRY HAS 125 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DA B 1 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 1 DA B 1 N1 - C2 - N3 ANGL. DEV. = -9.7 DEGREES REMARK 500 1 DA B 1 C2 - N3 - C4 ANGL. DEV. = 11.8 DEGREES REMARK 500 1 DA B 1 N3 - C4 - C5 ANGL. DEV. = -7.9 DEGREES REMARK 500 1 DA B 1 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DA B 1 N3 - C4 - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 1 DA B 2 N1 - C2 - N3 ANGL. DEV. = -9.7 DEGREES REMARK 500 1 DA B 2 C2 - N3 - C4 ANGL. DEV. = 10.4 DEGREES REMARK 500 1 DA B 2 N3 - C4 - C5 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DA B 2 C5 - C6 - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 DA B 2 C5 - N7 - C8 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA B 2 N7 - C8 - N9 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 DA B 2 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DA B 2 N3 - C4 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DA B 2 C6 - C5 - N7 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 DT B 3 C5' - C4' - O4' ANGL. DEV. = 7.7 DEGREES REMARK 500 1 DT B 3 C1' - O4' - C4' ANGL. DEV. = -10.6 DEGREES REMARK 500 1 DT B 3 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DT B 3 N1 - C2 - N3 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DT B 3 C2 - N3 - C4 ANGL. DEV. = -6.7 DEGREES REMARK 500 1 DT B 3 N3 - C4 - C5 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 DT B 3 N3 - C2 - O2 ANGL. DEV. = -7.0 DEGREES REMARK 500 1 DT B 3 N3 - C4 - O4 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DT B 4 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DT B 4 N1 - C2 - N3 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 DT B 4 C2 - N3 - C4 ANGL. DEV. = -6.7 DEGREES REMARK 500 1 DT B 4 N3 - C4 - C5 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 DT B 4 N3 - C2 - O2 ANGL. DEV. = -5.7 DEGREES REMARK 500 1 DT B 4 N3 - C4 - O4 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DT B 4 C5 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DG B 5 C6 - N1 - C2 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 DG B 5 C2 - N3 - C4 ANGL. DEV. = 9.4 DEGREES REMARK 500 1 DG B 5 N3 - C4 - C5 ANGL. DEV. = -7.2 DEGREES REMARK 500 1 DG B 5 C5 - C6 - N1 ANGL. DEV. = 8.0 DEGREES REMARK 500 1 DG B 5 C4 - C5 - N7 ANGL. DEV. = -4.5 DEGREES REMARK 500 1 DG B 5 C5 - N7 - C8 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DG B 5 N7 - C8 - N9 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 DG B 5 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DG B 5 N3 - C4 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG B 5 C6 - C5 - N7 ANGL. DEV. = 5.6 DEGREES REMARK 500 1 DG B 5 C5 - C6 - O6 ANGL. DEV. = -6.3 DEGREES REMARK 500 1 DT B 6 C2 - N3 - C4 ANGL. DEV. = -7.2 DEGREES REMARK 500 1 DT B 6 N3 - C4 - C5 ANGL. DEV. = 6.9 DEGREES REMARK 500 1 DT B 6 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 DT B 6 C6 - C5 - C7 ANGL. DEV. = -6.7 DEGREES REMARK 500 1 DG B 7 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 1 DG B 7 C6 - N1 - C2 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 DG B 7 C2 - N3 - C4 ANGL. DEV. = 9.5 DEGREES REMARK 500 1 DG B 7 N3 - C4 - C5 ANGL. DEV. = -7.2 DEGREES REMARK 500 1 DG B 7 C5 - C6 - N1 ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 465 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 109.85 -39.18 REMARK 500 1 SER A 28 144.36 -175.28 REMARK 500 1 MET A 42 -31.64 -39.56 REMARK 500 1 ASN A 50 -15.91 91.14 REMARK 500 2 HIS A 29 69.75 66.50 REMARK 500 2 ASN A 46 38.34 -82.06 REMARK 500 3 TYR A 17 -50.84 -22.99 REMARK 500 3 SER A 28 147.83 -173.11 REMARK 500 3 HIS A 29 72.40 59.78 REMARK 500 3 ASN A 46 -36.46 -19.68 REMARK 500 3 TYR A 47 124.90 53.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DA B 1 0.08 SIDE_CHAIN REMARK 500 1 DA B 2 0.07 SIDE_CHAIN REMARK 500 1 DT B 3 0.24 SIDE_CHAIN REMARK 500 1 DT B 4 0.23 SIDE_CHAIN REMARK 500 1 DG B 5 0.15 SIDE_CHAIN REMARK 500 1 DT B 6 0.11 SIDE_CHAIN REMARK 500 1 DG B 7 0.16 SIDE_CHAIN REMARK 500 1 DA B 8 0.07 SIDE_CHAIN REMARK 500 1 DG B 11 0.12 SIDE_CHAIN REMARK 500 1 DC C 1 0.11 SIDE_CHAIN REMARK 500 1 DG C 2 0.11 SIDE_CHAIN REMARK 500 1 DC C 3 0.08 SIDE_CHAIN REMARK 500 1 DC C 5 0.14 SIDE_CHAIN REMARK 500 1 DA C 6 0.17 SIDE_CHAIN REMARK 500 1 DC C 7 0.08 SIDE_CHAIN REMARK 500 1 DA C 9 0.13 SIDE_CHAIN REMARK 500 1 DT C 10 0.15 SIDE_CHAIN REMARK 500 1 DT C 11 0.20 SIDE_CHAIN REMARK 500 1 TYR A 7 0.14 SIDE_CHAIN REMARK 500 1 TYR A 12 0.07 SIDE_CHAIN REMARK 500 1 TYR A 17 0.08 SIDE_CHAIN REMARK 500 1 TYR A 47 0.09 SIDE_CHAIN REMARK 500 2 DA B 1 0.07 SIDE_CHAIN REMARK 500 2 DA B 2 0.09 SIDE_CHAIN REMARK 500 2 DT B 3 0.09 SIDE_CHAIN REMARK 500 2 DT B 4 0.10 SIDE_CHAIN REMARK 500 2 DG B 5 0.10 SIDE_CHAIN REMARK 500 2 DT B 6 0.09 SIDE_CHAIN REMARK 500 2 DG B 7 0.12 SIDE_CHAIN REMARK 500 2 DA B 8 0.07 SIDE_CHAIN REMARK 500 2 DG B 9 0.09 SIDE_CHAIN REMARK 500 2 DC B 10 0.07 SIDE_CHAIN REMARK 500 2 DG B 11 0.12 SIDE_CHAIN REMARK 500 2 DC C 1 0.13 SIDE_CHAIN REMARK 500 2 DC C 3 0.11 SIDE_CHAIN REMARK 500 2 DT C 4 0.09 SIDE_CHAIN REMARK 500 2 DC C 5 0.07 SIDE_CHAIN REMARK 500 2 DA C 6 0.08 SIDE_CHAIN REMARK 500 2 DC C 7 0.08 SIDE_CHAIN REMARK 500 2 DA C 8 0.08 SIDE_CHAIN REMARK 500 2 DA C 9 0.07 SIDE_CHAIN REMARK 500 2 DT C 10 0.09 SIDE_CHAIN REMARK 500 2 DT C 11 0.11 SIDE_CHAIN REMARK 500 2 TYR A 7 0.09 SIDE_CHAIN REMARK 500 2 TYR A 12 0.11 SIDE_CHAIN REMARK 500 2 TYR A 47 0.14 SIDE_CHAIN REMARK 500 3 DT B 3 0.12 SIDE_CHAIN REMARK 500 3 DT B 4 0.10 SIDE_CHAIN REMARK 500 3 DG B 5 0.12 SIDE_CHAIN REMARK 500 3 DT B 6 0.17 SIDE_CHAIN REMARK 500 3 DG B 7 0.11 SIDE_CHAIN REMARK 500 3 DG B 9 0.07 SIDE_CHAIN REMARK 500 3 DC B 10 0.10 SIDE_CHAIN REMARK 500 3 DG B 11 0.08 SIDE_CHAIN REMARK 500 3 DC C 1 0.14 SIDE_CHAIN REMARK 500 3 DG C 2 0.12 SIDE_CHAIN REMARK 500 3 DT C 4 0.10 SIDE_CHAIN REMARK 500 3 DC C 5 0.13 SIDE_CHAIN REMARK 500 3 DA C 6 0.11 SIDE_CHAIN REMARK 500 3 DA C 8 0.10 SIDE_CHAIN REMARK 500 3 DA C 9 0.10 SIDE_CHAIN REMARK 500 3 DT C 10 0.09 SIDE_CHAIN REMARK 500 3 DT C 11 0.11 SIDE_CHAIN REMARK 500 3 TYR A 7 0.12 SIDE_CHAIN REMARK 500 3 TYR A 12 0.12 SIDE_CHAIN REMARK 500 3 TYR A 17 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 TYR A 7 -10.45 REMARK 500 2 GLU A 11 -10.29 REMARK 500 2 ALA A 27 12.13 REMARK 500 2 HIS A 29 -12.13 REMARK 500 2 PRO A 49 12.22 REMARK 500 3 THR A 19 -10.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 NA C 12 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT C 4 OP1 REMARK 620 2 HOH A 53 O 100.4 REMARK 620 3 HOH A 57 O 102.6 84.0 REMARK 620 4 HOH C 923 O 87.5 144.8 128.0 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 12
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LCC RELATED DB: PDB
DBREF 1LCD A 1 51 UNP P03023 LACI_ECOLI 1 51 DBREF 1LCD B 1 11 PDB 1LCD 1LCD 1 11 DBREF 1LCD C 1 11 PDB 1LCD 1LCD 1 11
SEQRES 1 B 11 DA DA DT DT DG DT DG DA DG DC DG SEQRES 1 C 11 DC DG DC DT DC DA DC DA DA DT DT SEQRES 1 A 51 MET LYS PRO VAL THR LEU TYR ASP VAL ALA GLU TYR ALA SEQRES 2 A 51 GLY VAL SER TYR GLN THR VAL SER ARG VAL VAL ASN GLN SEQRES 3 A 51 ALA SER HIS VAL SER ALA LYS THR ARG GLU LYS VAL GLU SEQRES 4 A 51 ALA ALA MET ALA GLU LEU ASN TYR ILE PRO ASN ARG
HET NA C 12 1
HETNAM NA SODIUM ION
FORMUL 4 NA NA 1+ FORMUL 5 HOH *49(H2 O)
HELIX 1 1 THR A 5 GLY A 14 1 10 HELIX 2 2 SER A 16 ASN A 25 1 10 HELIX 3 3 SER A 31 LEU A 45 1 15
LINK NA NA C 12 OP1 DT C 4 1555 1555 2.52 LINK NA NA C 12 O HOH A 53 1555 1555 2.10 LINK NA NA C 12 O HOH A 57 1555 1555 2.22 LINK NA NA C 12 O HOH C 923 1555 1555 2.13
SITE 1 AC1 6 VAL A 24 HOH A 53 HOH A 57 DC C 3 SITE 2 AC1 6 DT C 4 HOH C 923
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000