10 20 30 40 50 60 70 80 1L2M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 22-FEB-02 1L2M
TITLE MINIMIZED AVERAGE STRUCTURE OF THE N-TERMINAL, DNA-BINDING TITLE 2 DOMAIN OF THE REPLICATION INITIATION PROTEIN FROM A TITLE 3 GEMINIVIRUS (TOMATO YELLOW LEAF CURL VIRUS-SARDINIA)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: REP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 4-121), DNA-BINDING COMPND 5 DOMAIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOMATO YELLOW LEAF CURL SARDINIA SOURCE 3 VIRUS; SOURCE 4 ORGANISM_TAXID: 123735; SOURCE 5 GENE: REP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS A+B FOLD, RBD-LIKE FOLD, VIRAL PROTEIN
EXPDTA SOLUTION NMR
MDLTYP MINIMIZED AVERAGE
AUTHOR R.CAMPOS-OLIVAS,J.M.LOUIS,D.CLEROT,B.GRONENBORN, AUTHOR 2 A.M.GRONENBORN
REVDAT 2 24-FEB-09 1L2M 1 VERSN REVDAT 1 18-SEP-02 1L2M 0
JRNL AUTH R.CAMPOS-OLIVAS,J.M.LOUIS,D.CLEROT,B.GRONENBORN, JRNL AUTH 2 A.M.GRONENBORN JRNL TITL THE STRUCTURE OF A REPLICATION INITIATOR UNITES JRNL TITL 2 DIVERSE ASPECTS OF NUCLEIC ACID METABOLISM JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 10310 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12130667 JRNL DOI 10.1073/PNAS.152342699
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1L2M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-02. REMARK 100 THE RCSB ID CODE IS RCSB015586.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.3M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.0MM [10%-13C;U-99% 15N] REMARK 210 REP4-121, SODIUM PHOSPHATE REMARK 210 20MM, NACL 100MM, DTT 1MM; REMARK 210 0.8-1.0MM [U-13C;U-99% 15N] REMARK 210 REP4-121, SODIUM PHOSPHATE REMARK 210 20MM, NACL 100MM, DTT 1MM; REMARK 210 0.8-1.0MM [10%-13C;U-99% 15N] REMARK 210 REP4-121, SODIUM PHOSPHATE REMARK 210 20MM, NACL 100MM, DTT 1MM; REMARK 210 0.8-1.0MM [U-13C;U-99% 15N] REMARK 210 REP4-121, SODIUM PHOSPHATE REMARK 210 20MM, NACL 100MM, DTT 1MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, HNHA, HNHB, 4D_13C/15N- REMARK 210 SEPARATED_NOESY, 2D HNCOCG REMARK 210 AROM, 2D HNCO AROM, 4D 13C,13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ, REMARK 210 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 4.1.1, REMARK 210 TALOS, DYANA REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANHEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS ENTRY CONTAINS THE MINIMIZED AVERAGE STRUCTURE OF REMARK 210 THE 30-CONFORMER ENSEMBLE DEPOSITED UNDER CODE 1L5I. THE REMARK 210 SINGLE MODEL INCLUDED IN THIS ENTRY IS A GOOD REPRESENTATION REMARK 210 OF THE 30-CONFORMER ENSEMBLE.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 42.95 39.04 REMARK 500 THR A 39 -108.66 -115.80 REMARK 500 ASN A 40 137.67 -171.53 REMARK 500 LEU A 42 -84.54 -103.21 REMARK 500 CYS A 70 69.48 -108.46 REMARK 500 THR A 71 31.95 -96.02 REMARK 500 GLN A 73 38.66 -87.87 REMARK 500 LYS A 95 -143.90 -61.88 REMARK 500 SER A 97 142.51 156.81 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5297 RELATED DB: BMRB REMARK 900 1H, 13C, AND 15N NMR ASSIGNMENTS. COUPLING CONSTANTS HNHA. REMARK 900 RELATED ID: 1L5I RELATED DB: PDB REMARK 900 ENSEMBLE OF 30 CONFORMERS
DBREF 1L2M A 4 121 UNP P27260 VAL1_TYLCS 4 121
SEQRES 1 A 118 SER GLY ARG PHE SER ILE LYS ALA LYS ASN TYR PHE LEU SEQRES 2 A 118 THR TYR PRO LYS CYS ASP LEU THR LYS GLU ASN ALA LEU SEQRES 3 A 118 SER GLN ILE THR ASN LEU GLN THR PRO THR ASN LYS LEU SEQRES 4 A 118 PHE ILE LYS ILE CYS ARG GLU LEU HIS GLU ASN GLY GLU SEQRES 5 A 118 PRO HIS LEU HIS ILE LEU ILE GLN PHE GLU GLY LYS TYR SEQRES 6 A 118 ASN CYS THR ASN GLN ARG PHE PHE ASP LEU VAL SER PRO SEQRES 7 A 118 THR ARG SER ALA HIS PHE HIS PRO ASN ILE GLN GLY ALA SEQRES 8 A 118 LYS SER SER SER ASP VAL LYS SER TYR ILE ASP LYS ASP SEQRES 9 A 118 GLY ASP VAL LEU GLU TRP GLY THR PHE GLN ILE ASP GLY SEQRES 10 A 118 ARG
HELIX 1 1 THR A 24 LEU A 35 1 12 HELIX 2 2 SER A 98 LYS A 106 1 9
SHEET 1 A 5 ASN A 90 ALA A 94 0 SHEET 2 A 5 LYS A 10 TYR A 18 -1 N PHE A 15 O GLN A 92 SHEET 3 A 5 PRO A 56 ASN A 69 -1 O ILE A 62 N TYR A 14 SHEET 4 A 5 LYS A 41 LEU A 50 -1 N LYS A 45 O LEU A 61 SHEET 5 A 5 LEU A 111 TRP A 113 -1 O TRP A 113 N ILE A 44 SHEET 1 B 2 LEU A 78 VAL A 79 0 SHEET 2 B 2 HIS A 86 PHE A 87 -1 O PHE A 87 N LEU A 78
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000