10 20 30 40 50 60 70 80 1KZ2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 06-FEB-02 1KZ2
TITLE SOLUTION STRUCTURE OF THE THIRD HELIX OF ANTENNAPEDIA TITLE 2 HOMEODOMAIN DERIVATIVE [W6F,W14F]
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTENNAPEDIA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHETIZED IN SOLID- SOURCE 4 PHASE USING THE BOC-CHEMISTRY. THE SEQUENCE OF THIS SOURCE 5 PEPTIDE IS BASED ON A SEQUENCE NATURALLY FOUND IN SOURCE 6 DROSOPHILA MELANOGASTER (FRUIT FLY).
KEYWDS IRREGULAR HELIX, TURN-LIKE PARTS, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 39
AUTHOR A.CZAJLIK,E.MESKO,B.PENKE,A.PERCZEL
REVDAT 3 24-FEB-09 1KZ2 1 VERSN REVDAT 2 19-JUN-02 1KZ2 1 JRNL REVDAT 1 20-FEB-02 1KZ2 0
JRNL AUTH A.CZAJLIK,E.MESKO,B.PENKE,A.PERCZEL JRNL TITL INVESTIGATION OF PENETRATIN PEPTIDES. PART 1. THE JRNL TITL 2 ENVIRONMENT DEPENDENT CONFORMATIONAL PROPERTIES OF JRNL TITL 3 PENETRATIN AND TWO OF ITS DERIVATIVES. JRNL REF J.PEPT.SCI. V. 8 151 2002 JRNL REFN ISSN 1075-2617 JRNL PMID 11991205 JRNL DOI 10.1002/PSC.380
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 410 NOE-DERIVED DISTANCE RESTRAINTS
REMARK 4 REMARK 4 1KZ2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-02. REMARK 100 THE RCSB ID CODE IS RCSB015489.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM PEPTIDE; 90% TFED2, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97.2, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING AND REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 39 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 4 N GLN A 8 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 -59.33 -149.42 REMARK 500 1 ASN A 9 -9.14 -59.92 REMARK 500 2 GLN A 2 -40.96 -135.27 REMARK 500 3 GLN A 2 -60.48 -149.27 REMARK 500 4 GLN A 2 -54.83 -150.26 REMARK 500 5 GLN A 2 -40.60 -137.34 REMARK 500 5 ASN A 9 -9.25 -59.85 REMARK 500 6 GLN A 2 -56.55 -150.27 REMARK 500 6 ASN A 9 -9.77 -59.73 REMARK 500 8 GLN A 2 -37.23 -137.76 REMARK 500 9 GLN A 2 -60.12 -148.46 REMARK 500 9 ASN A 9 -9.55 -59.71 REMARK 500 10 ASN A 9 -9.92 -59.65 REMARK 500 10 LYS A 15 -34.98 -137.27 REMARK 500 11 GLN A 2 -58.26 -147.74 REMARK 500 12 GLN A 2 -60.11 -146.04 REMARK 500 13 GLN A 2 -36.35 -137.90 REMARK 500 14 GLN A 2 -61.49 -148.49 REMARK 500 15 GLN A 2 -60.14 -148.32 REMARK 500 16 GLN A 2 -42.55 -137.96 REMARK 500 17 GLN A 2 -42.28 -140.20 REMARK 500 17 ASN A 9 -9.53 -59.47 REMARK 500 18 GLN A 2 -59.80 -145.42 REMARK 500 18 LYS A 15 10.37 -140.32 REMARK 500 19 GLN A 2 -42.02 -143.91 REMARK 500 20 GLN A 2 -60.08 -148.56 REMARK 500 20 ASN A 9 -9.77 -59.84 REMARK 500 21 GLN A 2 -60.26 -149.19 REMARK 500 22 GLN A 2 -35.78 -137.83 REMARK 500 23 GLN A 2 -60.82 -149.07 REMARK 500 24 GLN A 2 -43.81 -137.38 REMARK 500 24 LYS A 15 10.16 -140.25 REMARK 500 25 GLN A 2 -42.37 -140.75 REMARK 500 26 GLN A 2 -60.86 -149.50 REMARK 500 27 GLN A 2 -35.37 -143.45 REMARK 500 28 GLN A 2 -41.31 -137.98 REMARK 500 28 ILE A 3 -39.86 -39.11 REMARK 500 29 GLN A 2 -62.31 -148.65 REMARK 500 30 GLN A 2 -37.57 -139.67 REMARK 500 31 GLN A 2 -39.84 -140.00 REMARK 500 32 ASN A 9 -9.38 -59.86 REMARK 500 33 GLN A 2 -60.76 -146.81 REMARK 500 34 GLN A 2 -35.85 -140.35 REMARK 500 35 GLN A 2 -35.30 -141.01 REMARK 500 35 ASN A 9 -9.59 -59.92 REMARK 500 35 LYS A 15 10.76 -141.25 REMARK 500 36 GLN A 2 -34.16 -142.82 REMARK 500 37 GLN A 2 -55.52 -149.39 REMARK 500 38 GLN A 2 -60.13 -147.49 REMARK 500 39 GLN A 2 -44.12 -136.42 REMARK 500 39 LYS A 15 10.77 -140.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.24 SIDE_CHAIN REMARK 500 1 ARG A 10 0.25 SIDE_CHAIN REMARK 500 1 ARG A 11 0.30 SIDE_CHAIN REMARK 500 2 ARG A 1 0.30 SIDE_CHAIN REMARK 500 2 ARG A 10 0.22 SIDE_CHAIN REMARK 500 2 ARG A 11 0.19 SIDE_CHAIN REMARK 500 3 ARG A 1 0.30 SIDE_CHAIN REMARK 500 3 ARG A 10 0.30 SIDE_CHAIN REMARK 500 3 ARG A 11 0.29 SIDE_CHAIN REMARK 500 4 ARG A 1 0.25 SIDE_CHAIN REMARK 500 4 ARG A 10 0.24 SIDE_CHAIN REMARK 500 4 ARG A 11 0.18 SIDE_CHAIN REMARK 500 5 ARG A 1 0.29 SIDE_CHAIN REMARK 500 5 ARG A 10 0.29 SIDE_CHAIN REMARK 500 5 ARG A 11 0.20 SIDE_CHAIN REMARK 500 6 ARG A 1 0.25 SIDE_CHAIN REMARK 500 6 ARG A 10 0.17 SIDE_CHAIN REMARK 500 6 ARG A 11 0.29 SIDE_CHAIN REMARK 500 7 ARG A 1 0.28 SIDE_CHAIN REMARK 500 7 ARG A 10 0.27 SIDE_CHAIN REMARK 500 7 ARG A 11 0.25 SIDE_CHAIN REMARK 500 8 ARG A 1 0.30 SIDE_CHAIN REMARK 500 8 ARG A 10 0.27 SIDE_CHAIN REMARK 500 8 ARG A 11 0.18 SIDE_CHAIN REMARK 500 9 ARG A 1 0.22 SIDE_CHAIN REMARK 500 9 ARG A 10 0.28 SIDE_CHAIN REMARK 500 9 ARG A 11 0.32 SIDE_CHAIN REMARK 500 10 ARG A 1 0.30 SIDE_CHAIN REMARK 500 10 ARG A 10 0.27 SIDE_CHAIN REMARK 500 10 ARG A 11 0.26 SIDE_CHAIN REMARK 500 11 ARG A 1 0.29 SIDE_CHAIN REMARK 500 11 ARG A 10 0.27 SIDE_CHAIN REMARK 500 11 ARG A 11 0.27 SIDE_CHAIN REMARK 500 12 ARG A 1 0.32 SIDE_CHAIN REMARK 500 12 ARG A 10 0.29 SIDE_CHAIN REMARK 500 12 ARG A 11 0.30 SIDE_CHAIN REMARK 500 13 ARG A 1 0.20 SIDE_CHAIN REMARK 500 13 ARG A 10 0.30 SIDE_CHAIN REMARK 500 13 ARG A 11 0.32 SIDE_CHAIN REMARK 500 14 ARG A 1 0.30 SIDE_CHAIN REMARK 500 14 ARG A 10 0.29 SIDE_CHAIN REMARK 500 14 ARG A 11 0.28 SIDE_CHAIN REMARK 500 15 ARG A 1 0.30 SIDE_CHAIN REMARK 500 15 ARG A 10 0.26 SIDE_CHAIN REMARK 500 15 ARG A 11 0.24 SIDE_CHAIN REMARK 500 16 ARG A 1 0.31 SIDE_CHAIN REMARK 500 16 ARG A 10 0.30 SIDE_CHAIN REMARK 500 16 ARG A 11 0.22 SIDE_CHAIN REMARK 500 17 ARG A 1 0.22 SIDE_CHAIN REMARK 500 17 ARG A 10 0.31 SIDE_CHAIN REMARK 500 17 ARG A 11 0.21 SIDE_CHAIN REMARK 500 18 ARG A 1 0.25 SIDE_CHAIN REMARK 500 18 ARG A 10 0.26 SIDE_CHAIN REMARK 500 18 ARG A 11 0.20 SIDE_CHAIN REMARK 500 19 ARG A 1 0.23 SIDE_CHAIN REMARK 500 19 ARG A 10 0.27 SIDE_CHAIN REMARK 500 19 ARG A 11 0.30 SIDE_CHAIN REMARK 500 20 ARG A 1 0.31 SIDE_CHAIN REMARK 500 20 ARG A 10 0.31 SIDE_CHAIN REMARK 500 20 ARG A 11 0.24 SIDE_CHAIN REMARK 500 21 ARG A 1 0.25 SIDE_CHAIN REMARK 500 21 ARG A 10 0.31 SIDE_CHAIN REMARK 500 21 ARG A 11 0.20 SIDE_CHAIN REMARK 500 22 ARG A 1 0.30 SIDE_CHAIN REMARK 500 22 ARG A 10 0.30 SIDE_CHAIN REMARK 500 22 ARG A 11 0.23 SIDE_CHAIN REMARK 500 23 ARG A 1 0.32 SIDE_CHAIN REMARK 500 23 ARG A 10 0.21 SIDE_CHAIN REMARK 500 23 ARG A 11 0.20 SIDE_CHAIN REMARK 500 24 ARG A 1 0.28 SIDE_CHAIN REMARK 500 24 ARG A 10 0.30 SIDE_CHAIN REMARK 500 24 ARG A 11 0.23 SIDE_CHAIN REMARK 500 25 ARG A 1 0.28 SIDE_CHAIN REMARK 500 25 ARG A 10 0.31 SIDE_CHAIN REMARK 500 25 ARG A 11 0.31 SIDE_CHAIN REMARK 500 26 ARG A 1 0.29 SIDE_CHAIN REMARK 500 26 ARG A 10 0.30 SIDE_CHAIN REMARK 500 26 ARG A 11 0.21 SIDE_CHAIN REMARK 500 27 ARG A 1 0.27 SIDE_CHAIN REMARK 500 27 ARG A 10 0.31 SIDE_CHAIN REMARK 500 27 ARG A 11 0.30 SIDE_CHAIN REMARK 500 28 ARG A 1 0.30 SIDE_CHAIN REMARK 500 28 ARG A 10 0.30 SIDE_CHAIN REMARK 500 28 ARG A 11 0.19 SIDE_CHAIN REMARK 500 29 ARG A 1 0.22 SIDE_CHAIN REMARK 500 29 ARG A 10 0.22 SIDE_CHAIN REMARK 500 29 ARG A 11 0.21 SIDE_CHAIN REMARK 500 30 ARG A 1 0.27 SIDE_CHAIN REMARK 500 30 ARG A 10 0.29 SIDE_CHAIN REMARK 500 30 ARG A 11 0.21 SIDE_CHAIN REMARK 500 31 ARG A 1 0.24 SIDE_CHAIN REMARK 500 31 ARG A 10 0.31 SIDE_CHAIN REMARK 500 31 ARG A 11 0.27 SIDE_CHAIN REMARK 500 32 ARG A 1 0.21 SIDE_CHAIN REMARK 500 32 ARG A 10 0.21 SIDE_CHAIN REMARK 500 32 ARG A 11 0.28 SIDE_CHAIN REMARK 500 33 ARG A 1 0.25 SIDE_CHAIN REMARK 500 33 ARG A 10 0.23 SIDE_CHAIN REMARK 500 33 ARG A 11 0.32 SIDE_CHAIN REMARK 500 34 ARG A 1 0.31 SIDE_CHAIN REMARK 500 34 ARG A 10 0.31 SIDE_CHAIN REMARK 500 34 ARG A 11 0.20 SIDE_CHAIN REMARK 500 35 ARG A 1 0.25 SIDE_CHAIN REMARK 500 35 ARG A 10 0.25 SIDE_CHAIN REMARK 500 35 ARG A 11 0.26 SIDE_CHAIN REMARK 500 36 ARG A 1 0.21 SIDE_CHAIN REMARK 500 36 ARG A 10 0.30 SIDE_CHAIN REMARK 500 36 ARG A 11 0.32 SIDE_CHAIN REMARK 500 37 ARG A 1 0.28 SIDE_CHAIN REMARK 500 37 ARG A 10 0.23 SIDE_CHAIN REMARK 500 37 ARG A 11 0.29 SIDE_CHAIN REMARK 500 38 ARG A 1 0.26 SIDE_CHAIN REMARK 500 38 ARG A 10 0.27 SIDE_CHAIN REMARK 500 38 ARG A 11 0.31 SIDE_CHAIN REMARK 500 39 ARG A 1 0.21 SIDE_CHAIN REMARK 500 39 ARG A 10 0.24 SIDE_CHAIN REMARK 500 39 ARG A 11 0.22 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HOM RELATED DB: PDB REMARK 900 1HOM CONTAINS THE ENTIRE HOMEODOMAIN REMARK 900 RELATED ID: 1KZO RELATED DB: PDB REMARK 900 THIRD HELIX OF ANTENNAPEDIA HOMEODOMAIN REMARK 900 RELATED ID: 1KZ5 RELATED DB: PDB REMARK 900 THIRD HELIX OF ANTENNAPEDIA HOMEODOMAIN DERIVATIVE, 4 REMARK 900 DELETIONS
DBREF 1KZ2 A 1 16 UNP P09089 ZEN1_DROME 50 65
SEQADV 1KZ2 PHE A 6 UNP P09089 TRP 55 ENGINEERED SEQADV 1KZ2 PHE A 14 UNP P09089 TRP 63 ENGINEERED
SEQRES 1 A 16 ARG GLN ILE LYS ILE PHE PHE GLN ASN ARG ARG MET LYS SEQRES 2 A 16 PHE LYS LYS
HELIX 1 1 GLN A 2 MET A 12 1 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000