10 20 30 40 50 60 70 80 1KZ0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 06-FEB-02 1KZ0
TITLE SOLUTION STRUCTURE OF THE THIRD HELIX OF ANTENNAPEDIA TITLE 2 HOMEODOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTENNAPEDIA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT OF ANTENNAPEDIA HOMEODOMAIN; COMPND 5 SYNONYM: PENETRATIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE WAS SYNTHETIZED IN SOLID- SOURCE 4 PHASE USING THE BOC-CHEMISTRY. THE SOURCE OF THIS PEPTIDE SOURCE 5 IS NATURALLY FOUND IN DROSOPHILA MELANOGASTER (FRUIT FLY).
KEYWDS IRREGULAR HELIX, TURN-LIKE PARTS AT THE BEGINNING AND AT KEYWDS 2 THE END, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 26
AUTHOR A.CZAJLIK,E.MESKO,B.PENKE,A.PERCZEL
REVDAT 3 24-FEB-09 1KZ0 1 VERSN REVDAT 2 19-JUN-02 1KZ0 1 JRNL REVDAT 1 20-FEB-02 1KZ0 0
JRNL AUTH A.CZAJLIK,E.MESKO,B.PENKE,A.PERCZEL JRNL TITL INVESTIGATION OF PENETRATIN PEPTIDES. PART 1. THE JRNL TITL 2 ENVIRONMENT DEPENDENT CONFORMATIONAL PROPERTIES OF JRNL TITL 3 PENETRATIN AND TWO OF ITS DERIVATIVES. JRNL REF J.PEPT.SCI. V. 8 151 2002 JRNL REFN ISSN 1075-2617 JRNL PMID 11991205 JRNL DOI 10.1002/PSC.380
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 553 NOE-DERIVED RESTRAINTS
REMARK 4 REMARK 4 1KZ0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-02. REMARK 100 THE RCSB ID CODE IS RCSB015487.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PEPTIDE; 90% TFED2, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97.2, X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING AND REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 2 -152.60 -126.86 REMARK 500 1 TRP A 6 -98.30 -41.17 REMARK 500 1 PHE A 7 -9.37 -56.86 REMARK 500 1 LYS A 13 45.39 -78.59 REMARK 500 1 TRP A 14 -165.33 -113.40 REMARK 500 2 GLN A 2 -156.51 -130.00 REMARK 500 2 TRP A 6 -99.00 -41.01 REMARK 500 2 PHE A 7 -9.87 -56.14 REMARK 500 2 LYS A 13 43.55 -78.89 REMARK 500 2 TRP A 14 -161.51 -111.99 REMARK 500 3 GLN A 2 -146.56 -114.69 REMARK 500 3 ILE A 3 36.63 70.06 REMARK 500 3 TRP A 6 -99.00 -41.16 REMARK 500 3 PHE A 7 -9.87 -56.16 REMARK 500 3 LYS A 13 45.16 -79.21 REMARK 500 3 TRP A 14 -161.27 -111.68 REMARK 500 4 TRP A 6 -98.88 -41.34 REMARK 500 4 PHE A 7 -9.79 -56.47 REMARK 500 4 LYS A 13 44.76 -78.26 REMARK 500 4 TRP A 14 -164.99 -113.22 REMARK 500 5 GLN A 2 -158.47 -127.55 REMARK 500 5 TRP A 6 -98.83 -40.85 REMARK 500 5 PHE A 7 -9.90 -56.24 REMARK 500 5 LYS A 13 45.16 -79.69 REMARK 500 5 TRP A 14 -162.38 -111.40 REMARK 500 6 GLN A 2 -157.08 -127.18 REMARK 500 6 TRP A 6 -99.08 -40.79 REMARK 500 6 PHE A 7 -9.98 -56.08 REMARK 500 6 LYS A 13 39.36 -68.75 REMARK 500 6 TRP A 14 -162.90 -111.58 REMARK 500 7 GLN A 2 -160.26 -127.09 REMARK 500 7 TRP A 6 -99.18 -40.82 REMARK 500 7 LYS A 13 45.36 -80.61 REMARK 500 7 TRP A 14 -162.26 -111.87 REMARK 500 8 GLN A 2 -156.43 -125.57 REMARK 500 8 TRP A 6 -98.72 -40.66 REMARK 500 8 PHE A 7 -9.76 -56.32 REMARK 500 8 LYS A 13 45.06 -80.28 REMARK 500 8 TRP A 14 -161.92 -111.79 REMARK 500 9 GLN A 2 -156.16 -124.68 REMARK 500 9 TRP A 6 -99.15 -40.74 REMARK 500 9 LYS A 13 45.10 -80.98 REMARK 500 9 TRP A 14 -161.95 -110.97 REMARK 500 10 GLN A 2 -156.42 -127.97 REMARK 500 10 TRP A 6 -98.57 -41.28 REMARK 500 10 PHE A 7 -9.28 -56.97 REMARK 500 10 LYS A 13 44.11 -79.38 REMARK 500 10 TRP A 14 -162.03 -111.27 REMARK 500 11 GLN A 2 -138.25 -116.16 REMARK 500 11 ILE A 3 34.16 70.45 REMARK 500 11 TRP A 6 -98.49 -40.76 REMARK 500 11 PHE A 7 -9.71 -56.32 REMARK 500 11 LYS A 13 46.59 -82.61 REMARK 500 11 TRP A 14 -162.78 -110.89 REMARK 500 12 GLN A 2 -154.99 -126.65 REMARK 500 12 TRP A 6 -98.78 -41.23 REMARK 500 12 PHE A 7 -9.58 -56.62 REMARK 500 12 LYS A 13 45.13 -77.54 REMARK 500 12 TRP A 14 -164.28 -113.60 REMARK 500 13 GLN A 2 -158.10 -126.65 REMARK 500 13 TRP A 6 -98.66 -40.88 REMARK 500 13 PHE A 7 -9.43 -56.60 REMARK 500 13 LYS A 13 45.70 -79.52 REMARK 500 13 TRP A 14 -165.48 -112.84 REMARK 500 14 GLN A 2 -159.99 -131.33 REMARK 500 14 TRP A 6 -98.94 -40.96 REMARK 500 14 LYS A 13 45.37 -78.51 REMARK 500 14 TRP A 14 -164.91 -113.70 REMARK 500 15 GLN A 2 -159.56 -130.58 REMARK 500 15 TRP A 6 -98.89 -40.82 REMARK 500 15 LYS A 13 45.54 -78.68 REMARK 500 15 TRP A 14 -165.05 -113.34 REMARK 500 16 GLN A 2 -155.15 -127.33 REMARK 500 16 TRP A 6 -98.66 -40.83 REMARK 500 16 LYS A 13 43.95 -78.40 REMARK 500 16 TRP A 14 -162.04 -111.91 REMARK 500 17 TRP A 6 -98.96 -41.04 REMARK 500 17 PHE A 7 -9.82 -56.35 REMARK 500 17 LYS A 13 45.63 -80.90 REMARK 500 17 TRP A 14 -162.30 -112.09 REMARK 500 18 GLN A 2 -156.94 -125.37 REMARK 500 18 TRP A 6 -98.98 -40.99 REMARK 500 18 PHE A 7 -9.87 -56.25 REMARK 500 18 LYS A 13 45.62 -80.15 REMARK 500 18 TRP A 14 -162.19 -111.09 REMARK 500 19 GLN A 2 -156.84 -126.19 REMARK 500 19 TRP A 6 -99.01 -41.16 REMARK 500 19 PHE A 7 -9.71 -56.33 REMARK 500 19 LYS A 13 45.98 -79.33 REMARK 500 19 TRP A 14 -165.42 -113.15 REMARK 500 20 GLN A 2 -158.38 -130.04 REMARK 500 20 TRP A 6 -98.96 -40.96 REMARK 500 20 LYS A 13 45.32 -79.47 REMARK 500 20 TRP A 14 -162.43 -111.61 REMARK 500 21 GLN A 2 -159.59 -130.23 REMARK 500 21 TRP A 6 -98.95 -41.10 REMARK 500 21 PHE A 7 -9.92 -56.20 REMARK 500 21 LYS A 13 44.92 -78.86 REMARK 500 21 TRP A 14 -161.52 -112.08 REMARK 500 22 TRP A 6 -99.12 -41.07 REMARK 500 22 LYS A 13 44.99 -80.43 REMARK 500 22 TRP A 14 -161.66 -111.33 REMARK 500 23 GLN A 2 -153.87 -126.51 REMARK 500 23 TRP A 6 -99.01 -40.73 REMARK 500 23 LYS A 13 37.72 -67.10 REMARK 500 23 TRP A 14 -162.58 -112.53 REMARK 500 24 GLN A 2 -153.32 -125.90 REMARK 500 24 TRP A 6 -98.98 -41.06 REMARK 500 24 LYS A 13 45.82 -80.11 REMARK 500 24 TRP A 14 -161.96 -111.30 REMARK 500 25 GLN A 2 -151.85 -123.79 REMARK 500 25 TRP A 6 -98.81 -40.75 REMARK 500 25 LYS A 13 45.53 -81.80 REMARK 500 25 TRP A 14 -161.88 -110.73 REMARK 500 26 GLN A 2 -159.80 -129.56 REMARK 500 26 TRP A 6 -99.50 -40.80 REMARK 500 26 LYS A 13 44.81 -77.22 REMARK 500 26 TRP A 14 -166.20 -115.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.24 SIDE_CHAIN REMARK 500 1 ARG A 10 0.16 SIDE_CHAIN REMARK 500 1 ARG A 11 0.31 SIDE_CHAIN REMARK 500 2 ARG A 1 0.28 SIDE_CHAIN REMARK 500 2 ARG A 10 0.29 SIDE_CHAIN REMARK 500 2 ARG A 11 0.32 SIDE_CHAIN REMARK 500 3 ARG A 1 0.23 SIDE_CHAIN REMARK 500 3 ARG A 10 0.23 SIDE_CHAIN REMARK 500 3 ARG A 11 0.31 SIDE_CHAIN REMARK 500 4 ARG A 1 0.21 SIDE_CHAIN REMARK 500 4 ARG A 10 0.30 SIDE_CHAIN REMARK 500 4 ARG A 11 0.31 SIDE_CHAIN REMARK 500 5 ARG A 1 0.27 SIDE_CHAIN REMARK 500 5 ARG A 10 0.22 SIDE_CHAIN REMARK 500 5 ARG A 11 0.32 SIDE_CHAIN REMARK 500 6 ARG A 1 0.26 SIDE_CHAIN REMARK 500 6 ARG A 10 0.22 SIDE_CHAIN REMARK 500 6 ARG A 11 0.31 SIDE_CHAIN REMARK 500 7 ARG A 1 0.24 SIDE_CHAIN REMARK 500 7 ARG A 10 0.28 SIDE_CHAIN REMARK 500 7 ARG A 11 0.31 SIDE_CHAIN REMARK 500 8 ARG A 1 0.24 SIDE_CHAIN REMARK 500 8 ARG A 10 0.28 SIDE_CHAIN REMARK 500 8 ARG A 11 0.32 SIDE_CHAIN REMARK 500 9 ARG A 1 0.26 SIDE_CHAIN REMARK 500 9 ARG A 10 0.26 SIDE_CHAIN REMARK 500 9 ARG A 11 0.31 SIDE_CHAIN REMARK 500 10 ARG A 1 0.19 SIDE_CHAIN REMARK 500 10 ARG A 10 0.31 SIDE_CHAIN REMARK 500 10 ARG A 11 0.32 SIDE_CHAIN REMARK 500 11 ARG A 1 0.24 SIDE_CHAIN REMARK 500 11 ARG A 10 0.27 SIDE_CHAIN REMARK 500 11 ARG A 11 0.31 SIDE_CHAIN REMARK 500 12 ARG A 1 0.23 SIDE_CHAIN REMARK 500 12 ARG A 10 0.30 SIDE_CHAIN REMARK 500 12 ARG A 11 0.31 SIDE_CHAIN REMARK 500 13 ARG A 1 0.24 SIDE_CHAIN REMARK 500 13 ARG A 10 0.23 SIDE_CHAIN REMARK 500 13 ARG A 11 0.31 SIDE_CHAIN REMARK 500 14 ARG A 1 0.29 SIDE_CHAIN REMARK 500 14 ARG A 10 0.29 SIDE_CHAIN REMARK 500 14 ARG A 11 0.32 SIDE_CHAIN REMARK 500 15 ARG A 1 0.21 SIDE_CHAIN REMARK 500 15 ARG A 10 0.25 SIDE_CHAIN REMARK 500 15 ARG A 11 0.31 SIDE_CHAIN REMARK 500 16 ARG A 1 0.30 SIDE_CHAIN REMARK 500 16 ARG A 10 0.32 SIDE_CHAIN REMARK 500 16 ARG A 11 0.31 SIDE_CHAIN REMARK 500 17 ARG A 1 0.23 SIDE_CHAIN REMARK 500 17 ARG A 10 0.27 SIDE_CHAIN REMARK 500 17 ARG A 11 0.32 SIDE_CHAIN REMARK 500 18 ARG A 1 0.21 SIDE_CHAIN REMARK 500 18 ARG A 10 0.22 SIDE_CHAIN REMARK 500 18 ARG A 11 0.31 SIDE_CHAIN REMARK 500 19 ARG A 1 0.31 SIDE_CHAIN REMARK 500 19 ARG A 10 0.32 SIDE_CHAIN REMARK 500 19 ARG A 11 0.31 SIDE_CHAIN REMARK 500 20 ARG A 1 0.20 SIDE_CHAIN REMARK 500 20 ARG A 10 0.21 SIDE_CHAIN REMARK 500 20 ARG A 11 0.31 SIDE_CHAIN REMARK 500 21 ARG A 1 0.32 SIDE_CHAIN REMARK 500 21 ARG A 10 0.29 SIDE_CHAIN REMARK 500 21 ARG A 11 0.31 SIDE_CHAIN REMARK 500 22 ARG A 1 0.21 SIDE_CHAIN REMARK 500 22 ARG A 10 0.31 SIDE_CHAIN REMARK 500 22 ARG A 11 0.32 SIDE_CHAIN REMARK 500 23 ARG A 1 0.30 SIDE_CHAIN REMARK 500 23 ARG A 10 0.32 SIDE_CHAIN REMARK 500 23 ARG A 11 0.32 SIDE_CHAIN REMARK 500 24 ARG A 1 0.22 SIDE_CHAIN REMARK 500 24 ARG A 10 0.26 SIDE_CHAIN REMARK 500 24 ARG A 11 0.31 SIDE_CHAIN REMARK 500 25 ARG A 1 0.31 SIDE_CHAIN REMARK 500 25 ARG A 10 0.29 SIDE_CHAIN REMARK 500 25 ARG A 11 0.31 SIDE_CHAIN REMARK 500 26 ARG A 1 0.29 SIDE_CHAIN REMARK 500 26 ARG A 10 0.28 SIDE_CHAIN REMARK 500 26 ARG A 11 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HOM RELATED DB: PDB REMARK 900 1HOM CONTAINS THE ENTIRE HOMEODOMAIN REMARK 900 RELATED ID: 1KZ2 RELATED DB: PDB REMARK 900 THIRD HELIX[W6F,W14F] OF ANTENNAPEDIA HOMEODOMAIN REMARK 900 RELATED ID: 1KZ5 RELATED DB: PDB REMARK 900 THIRD HELIX OF ANTENNAPEDIA HOMEODOMAIN DERIVATIVE, 4 REMARK 900 DELETIONS
DBREF 1KZ0 A 1 16 UNP P02833 ANTP_DROME 50 65
SEQRES 1 A 16 ARG GLN ILE LYS ILE TRP PHE GLN ASN ARG ARG MET LYS SEQRES 2 A 16 TRP LYS LYS
HELIX 1 1 ILE A 5 MET A 12 1 8
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000