10 20 30 40 50 60 70 80 1KWD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 29-JAN-02 1KWD
TITLE SOLUTION STRUCTURE OF THE CENTRAL CONSERVED REGION OF HUMAN TITLE 2 RESPIRATORY SYNCYTIAL VIRUS ATTACHMENT GLYCOPROTEIN G 187
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR SURFACE GLYCOPROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 172-187; COMPND 5 SYNONYM: ATTACHMENT GLYCOPROTEIN G; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIS OF THE PEPTIDE WAS PERFORMED BY A SOURCE 4 SOLID PHASE METHOD USING FMOC/TBU CHEMISTRY.
KEYWDS CYSTEINE NOSE, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR M.SUGAWARA,J.CZAPLICKI,J.FERRAGE,J.F.HAEUW,U.F.POWER, AUTHOR 2 N.CORVAIA,T.NGUYEN,A.BECK,A.MILON
REVDAT 2 24-FEB-09 1KWD 1 VERSN REVDAT 1 17-JUN-03 1KWD 0
JRNL AUTH M.SUGAWARA,J.CZAPLICKI,J.FERRAGE,J.F.HAEUW, JRNL AUTH 2 U.F.POWER,N.CORVAIA,T.NGUYEN,A.BECK,A.MILTON JRNL TITL STRUCTURE-ANTIGENICITY RELATIONSHIP STUDIES OF THE JRNL TITL 2 CENTRAL CONSERVED REGION OF HUMAN RESPIRATORY JRNL TITL 3 SYNCYTIAL VIRUS PROTEIN G. JRNL REF J.PEPT.RES. V. 60 271 2002 JRNL REFN ISSN 1397-002X JRNL PMID 12383117 JRNL DOI 10.1034/J.1399-3011.2002.21027.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER 98 REMARK 3 AUTHORS : MSI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 76 NOE- REMARK 3 DERIVED DISTANCE RESTRAINS AND 5 DIHEDRAL ANGLE RESTRAINS.
REMARK 4 REMARK 4 1KWD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-02. REMARK 100 THE RCSB ID CODE IS RCSB015403.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM G4A(1-4/2-3), 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98, DISCOVER 98, REMARK 210 XWINNMR 2.5 REMARK 210 METHOD USED : SIMULATED ANNEALING COUPLED REMARK 210 WITH RESTRAINED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 16 CYS A 182 CB - CA - C ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 178 76.16 54.41 REMARK 500 3 ASN A 178 72.11 50.85 REMARK 500 5 ASN A 178 81.10 55.21 REMARK 500 9 THR A 181 -69.06 -157.46 REMARK 500 10 THR A 181 -63.20 -157.21 REMARK 500 11 ASN A 178 72.07 49.19 REMARK 500 11 ALA A 184 -8.70 -59.98 REMARK 500 14 ASN A 178 83.67 65.93 REMARK 500 15 THR A 181 -60.82 -155.72 REMARK 500 16 ASN A 178 81.74 61.40 REMARK 500 16 ASN A 179 111.04 -160.10 REMARK 500 16 CYS A 182 -73.48 -75.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KWE RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE CENTRAL CONSERVED REGION OF HUMAN REMARK 900 RESPIRATORY SYNCYTIAL VIRUS ATTACHMENT GLYCOPROTEIN G
DBREF 1KWD A 172 187 UNP P20895 VGLG_HRSVL 172 187
SEQRES 1 A 16 PRO CYS SER ILE CYS SER ASN ASN PRO THR CYS TRP ALA SEQRES 2 A 16 ILE CYS LYS
SSBOND 1 CYS A 173 CYS A 186 1555 1555 2.00 SSBOND 2 CYS A 176 CYS A 182 1555 1555 2.00
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000