10 20 30 40 50 60 70 80 1KV9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 25-JAN-02 1KV9
TITLE STRUCTURE AT 1.9 A RESOLUTION OF A QUINOHEMOPROTEIN ALCOHOL TITLE 2 DEHYDROGENASE FROM PSEUDOMONAS PUTIDA HK5
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.99.-
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303
KEYWDS QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE, ELECTRON TRANSFER, KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Z.-W.CHEN,K.MATSUSHITA,T.YAMASHITA,T.FUJII,H.TOYAMA,O.ADACHI, AUTHOR 2 H.D.BELLAMY,F.S.MATHEWS
REVDAT 4 13-JUL-11 1KV9 1 VERSN REVDAT 3 24-FEB-09 1KV9 1 VERSN REVDAT 2 01-APR-03 1KV9 1 JRNL REVDAT 1 10-JUL-02 1KV9 0
JRNL AUTH Z.W.CHEN,K.MATSUSHITA,T.YAMASHITA,T.A.FUJII,H.TOYAMA, JRNL AUTH 2 O.ADACHI,H.D.BELLAMY,F.S.MATHEWS JRNL TITL STRUCTURE AT 1.9 A RESOLUTION OF A QUINOHEMOPROTEIN ALCOHOL JRNL TITL 2 DEHYDROGENASE FROM PSEUDOMONAS PUTIDA HK5. JRNL REF STRUCTURE V. 10 837 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12057198 JRNL DOI 10.1016/S0969-2126(02)00774-8
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Z.XIA,W.DAI,Y.ZHANG,S.A.WHITE,G.D.BOYD,F.S.MATHEWS REMARK 1 TITL DETERMINATION OF THE GENE SEQUENCE AND THE THREE-DIMENSIONAL REMARK 1 TITL 2 STRUCTURE AT 2.4 ANGSTROMS RESOLUTION OF METHANOL REMARK 1 TITL 3 DEHYDROGENASE FROM METHYLOPHILUS W3A1 REMARK 1 REF J.MOL.BIOL. V. 259 480 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1996.0334
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 48672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4922 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 494 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5103 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 732 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.83 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KV9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-02. REMARK 100 THE RCSB ID CODE IS RCSB015379.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR + MIR + MAD REMARK 200 SOFTWARE USED: AMORE, SHARP REMARK 200 STARTING MODEL: PDB ENTRY 4AAH REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CITRATE, HEPES, 2- REMARK 280 PROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 665 REMARK 465 ALA A 666 REMARK 465 ALA A 667 REMARK 465 PRO A 668
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 595 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 HIS A 595 ND1 - CG - CD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 -75.88 71.46 REMARK 500 LYS A 34 29.09 -141.41 REMARK 500 ASP A 107 154.58 82.21 REMARK 500 PRO A 151 51.00 -68.96 REMARK 500 ASN A 169 -179.49 -172.15 REMARK 500 ASP A 233 -96.57 -146.36 REMARK 500 TYR A 268 47.36 -108.39 REMARK 500 SER A 270 62.03 36.90 REMARK 500 ASP A 292 122.06 -33.31 REMARK 500 LYS A 350 179.81 178.69 REMARK 500 TYR A 366 41.28 32.53 REMARK 500 PRO A 375 -164.77 -74.56 REMARK 500 ASN A 382 -147.39 -104.86 REMARK 500 ALA A 418 -165.72 -175.26 REMARK 500 PRO A 563 177.64 -57.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1270 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A1292 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A1618 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A1654 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1691 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH A1694 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A1711 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH A1730 DISTANCE = 7.07 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 595 NE2 REMARK 620 2 HEM A 901 NA 88.2 REMARK 620 3 HEM A 901 NB 87.0 90.1 REMARK 620 4 HEM A 901 NC 90.2 178.3 89.3 REMARK 620 5 HEM A 901 ND 91.3 90.6 178.2 90.0 REMARK 620 6 MET A 633 SD 176.6 92.5 89.6 89.1 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 295 OD2 REMARK 620 2 PQQ A 801 O7A 135.5 REMARK 620 3 GLU A 173 OE1 119.6 78.9 REMARK 620 4 PQQ A 801 O5 87.8 130.2 102.3 REMARK 620 5 PQQ A 801 N6 153.0 64.2 77.8 67.5 REMARK 620 6 GLU A 173 OE2 76.8 87.7 53.2 133.2 127.9 REMARK 620 7 ASN A 250 OD1 69.7 69.9 135.2 122.3 113.9 93.4 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACN A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 805
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AAH RELATED DB: PDB REMARK 900 DETERMINATION OF THE GENE SEQUENCE AND THE THREE- REMARK 900 DIMENSIONAL STRUCTURE AT 2.4 A RESOLUTION OF METHANOL REMARK 900 DEHYDROGENASE FROM METHYLOPHILUS W3A1
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE REMARK 999 WAS NOT AVAILABLE AT THE TIME OF PROCESSING.
DBREF 1KV9 A 1 668 UNP Q8GR64 Q8GR64_PSEPU 23 690
SEQRES 1 A 668 ALA GLY VAL ASP GLU ALA ALA ILE ARG ALA THR GLU GLN SEQRES 2 A 668 ALA GLY GLY GLU TRP LEU SER HIS GLY ARG THR TYR ALA SEQRES 3 A 668 GLU GLN ARG PHE SER PRO LEU LYS GLN ILE ASP ALA SER SEQRES 4 A 668 ASN VAL ARG SER LEU GLY LEU ALA TRP TYR MET ASP LEU SEQRES 5 A 668 ASP ASN THR ARG GLY LEU GLU ALA THR PRO LEU PHE HIS SEQRES 6 A 668 ASP GLY VAL ILE TYR THR SER MET SER TRP SER ARG VAL SEQRES 7 A 668 ILE ALA VAL ASP ALA ALA SER GLY LYS GLU LEU TRP ARG SEQRES 8 A 668 TYR ASP PRO GLU VAL ALA LYS VAL LYS ALA ARG THR SER SEQRES 9 A 668 CYS CYS ASP ALA VAL ASN ARG GLY VAL ALA LEU TRP GLY SEQRES 10 A 668 ASP LYS VAL TYR VAL GLY THR LEU ASP GLY ARG LEU ILE SEQRES 11 A 668 ALA LEU ASP ALA LYS THR GLY LYS ALA ILE TRP SER GLN SEQRES 12 A 668 GLN THR THR ASP PRO ALA LYS PRO TYR SER ILE THR GLY SEQRES 13 A 668 ALA PRO ARG VAL VAL LYS GLY LYS VAL ILE ILE GLY ASN SEQRES 14 A 668 GLY GLY ALA GLU TYR GLY VAL ARG GLY PHE VAL SER ALA SEQRES 15 A 668 TYR ASP ALA ASP THR GLY LYS LEU ALA TRP ARG PHE TYR SEQRES 16 A 668 THR VAL PRO GLY ASP PRO ALA LEU PRO TYR GLU HIS PRO SEQRES 17 A 668 GLU LEU ARG GLU ALA ALA LYS THR TRP GLN GLY ASP GLN SEQRES 18 A 668 TYR TRP LYS LEU GLY GLY GLY GLY THR VAL TRP ASP SER SEQRES 19 A 668 MET ALA TYR ASP PRO GLU LEU ASP LEU LEU TYR VAL GLY SEQRES 20 A 668 THR GLY ASN GLY SER PRO TRP ASN ARG GLU VAL ARG SER SEQRES 21 A 668 PRO GLY GLY GLY ASP ASN LEU TYR LEU SER SER ILE LEU SEQRES 22 A 668 ALA ILE ARG PRO ASP THR GLY LYS LEU ALA TRP HIS TYR SEQRES 23 A 668 GLN VAL THR PRO GLY ASP SER TRP ASP PHE THR ALA THR SEQRES 24 A 668 GLN GLN ILE THR LEU ALA GLU LEU ASN ILE ASP GLY LYS SEQRES 25 A 668 PRO ARG LYS VAL LEU MET GLN ALA PRO LYS ASN GLY PHE SEQRES 26 A 668 PHE TYR VAL LEU ASP ARG THR ASN GLY LYS LEU ILE SER SEQRES 27 A 668 ALA GLU LYS PHE GLY LYS VAL THR TRP ALA GLU LYS VAL SEQRES 28 A 668 ASP LEU ALA THR GLY ARG PRO VAL GLU ALA PRO GLY VAL SEQRES 29 A 668 ARG TYR GLU LYS GLU PRO ILE VAL MET TRP PRO SER PRO SEQRES 30 A 668 PHE GLY ALA HIS ASN TRP HIS SER MET SER PHE ASN PRO SEQRES 31 A 668 GLY THR GLY LEU VAL TYR ILE PRO TYR GLN GLU VAL PRO SEQRES 32 A 668 GLY VAL TYR ARG ASN GLU GLY LYS ASP PHE VAL THR ARG SEQRES 33 A 668 LYS ALA PHE ASN THR ALA ALA GLY PHE ALA ASP ALA THR SEQRES 34 A 668 ASP VAL PRO ALA ALA VAL VAL SER GLY ALA LEU LEU ALA SEQRES 35 A 668 TRP ASP PRO VAL LYS GLN LYS ALA ALA TRP LYS VAL PRO SEQRES 36 A 668 TYR PRO THR HIS TRP ASN GLY GLY THR LEU SER THR ALA SEQRES 37 A 668 GLY ASN LEU VAL PHE GLN GLY THR ALA ALA GLY GLN MET SEQRES 38 A 668 HIS ALA TYR SER ALA ASP LYS GLY GLU ALA LEU TRP GLN SEQRES 39 A 668 PHE GLU ALA GLN SER GLY ILE VAL ALA ALA PRO MET THR SEQRES 40 A 668 PHE GLU LEU ALA GLY ARG GLN TYR VAL ALA ILE MET ALA SEQRES 41 A 668 GLY TRP GLY GLY VAL ALA THR LEU THR GLY GLY GLU SER SEQRES 42 A 668 MET ASN LEU PRO GLY MET LYS ASN ARG SER ARG LEU LEU SEQRES 43 A 668 VAL PHE ALA LEU ASP GLY LYS ALA GLN LEU PRO PRO PRO SEQRES 44 A 668 ALA PRO ALA PRO ALA LYS VAL GLU ARG VAL PRO GLN PRO SEQRES 45 A 668 VAL THR ALA ALA PRO GLU GLN VAL GLN ALA GLY LYS GLN SEQRES 46 A 668 LEU TYR GLY GLN PHE CYS SER VAL CYS HIS GLY MET GLY SEQRES 47 A 668 THR ILE SER GLY GLY LEU ILE PRO ASP LEU ARG GLN SER SEQRES 48 A 668 SER ASP ALA THR ARG GLU HIS PHE GLN GLN ILE VAL LEU SEQRES 49 A 668 GLN GLY ALA LEU LYS PRO LEU GLY MET PRO SER PHE ASP SEQRES 50 A 668 ASP SER LEU LYS PRO GLU GLU VAL GLU GLN ILE LYS LEU SEQRES 51 A 668 TYR VAL MET SER ARG GLU TYR GLU ASP TYR MET ALA ARG SEQRES 52 A 668 HIS LYS ALA ALA PRO
HET CA A 802 1 HET PQQ A 801 24 HET HEM A 901 43 HET EPE A 804 15 HET ACN A 803 4 HET GOL A 805 6
HETNAM CA CALCIUM ION HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM ACN ACETONE HETNAM GOL GLYCEROL
HETSYN HEM HEME HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 CA CA 2+ FORMUL 3 PQQ C14 H6 N2 O8 FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 ACN C3 H6 O FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *732(H2 O)
HELIX 1 1 ASP A 4 THR A 11 1 8 HELIX 2 2 ASN A 40 ARG A 42 5 3 HELIX 3 3 SER A 74 SER A 76 5 3 HELIX 4 4 ALA A 97 SER A 104 5 8 HELIX 5 5 HIS A 207 LYS A 215 1 9 HELIX 6 6 GLN A 221 GLY A 226 1 6 HELIX 7 7 ASN A 255 SER A 260 1 6 HELIX 8 8 GLU A 409 PHE A 413 5 5 HELIX 9 9 GLY A 424 ALA A 428 5 5 HELIX 10 10 PRO A 432 VAL A 436 5 5 HELIX 11 11 GLY A 524 GLY A 530 1 7 HELIX 12 12 GLY A 531 LEU A 536 5 6 HELIX 13 13 ALA A 576 CYS A 591 1 16 HELIX 14 14 CYS A 591 GLY A 596 1 6 HELIX 15 15 MET A 597 ILE A 600 5 4 HELIX 16 16 ASP A 607 SER A 611 5 5 HELIX 17 17 SER A 612 HIS A 618 1 7 HELIX 18 18 HIS A 618 GLY A 626 1 9 HELIX 19 19 LEU A 628 GLY A 632 5 5 HELIX 20 20 LYS A 641 ARG A 663 1 23
SHEET 1 A 5 PHE A 30 SER A 31 0 SHEET 2 A 5 THR A 464 THR A 467 1 O SER A 466 N SER A 31 SHEET 3 A 5 LEU A 471 GLY A 475 -1 O PHE A 473 N LEU A 465 SHEET 4 A 5 GLN A 480 SER A 485 -1 O HIS A 482 N GLN A 474 SHEET 5 A 5 ALA A 491 GLU A 496 -1 O LEU A 492 N ALA A 483 SHEET 1 B 4 LEU A 44 ASP A 51 0 SHEET 2 B 4 ARG A 544 LEU A 550 -1 O ALA A 549 N GLY A 45 SHEET 3 B 4 ARG A 513 ALA A 520 -1 N VAL A 516 O PHE A 548 SHEET 4 B 4 MET A 506 LEU A 510 -1 N PHE A 508 O TYR A 515 SHEET 1 C 4 LEU A 63 HIS A 65 0 SHEET 2 C 4 VAL A 68 MET A 73 -1 O TYR A 70 N LEU A 63 SHEET 3 C 4 ARG A 77 ASP A 82 -1 O VAL A 81 N ILE A 69 SHEET 4 C 4 GLU A 88 TYR A 92 -1 O TYR A 92 N VAL A 78 SHEET 1 D 4 ALA A 114 TRP A 116 0 SHEET 2 D 4 LYS A 119 GLY A 123 -1 O TYR A 121 N ALA A 114 SHEET 3 D 4 ARG A 128 ASP A 133 -1 O LEU A 132 N VAL A 120 SHEET 4 D 4 ALA A 139 GLN A 144 -1 O ILE A 140 N ALA A 131 SHEET 1 E 4 ARG A 159 VAL A 161 0 SHEET 2 E 4 LYS A 164 ILE A 167 -1 O ILE A 166 N ARG A 159 SHEET 3 E 4 PHE A 179 ASP A 184 -1 O TYR A 183 N VAL A 165 SHEET 4 E 4 LEU A 190 TYR A 195 -1 O ALA A 191 N ALA A 182 SHEET 1 F 2 GLY A 227 GLY A 228 0 SHEET 2 F 2 GLY A 251 SER A 252 -1 O SER A 252 N GLY A 227 SHEET 1 G 4 MET A 235 ASP A 238 0 SHEET 2 G 4 LEU A 243 GLY A 247 -1 O TYR A 245 N ALA A 236 SHEET 3 G 4 SER A 271 ILE A 275 -1 O ILE A 275 N LEU A 244 SHEET 4 G 4 LEU A 282 GLN A 287 -1 O ALA A 283 N ALA A 274 SHEET 1 H 4 ILE A 302 ILE A 309 0 SHEET 2 H 4 LYS A 312 GLN A 319 -1 O ARG A 314 N LEU A 307 SHEET 3 H 4 PHE A 325 ASP A 330 -1 O TYR A 327 N GLN A 319 SHEET 4 H 4 LEU A 336 LYS A 341 -1 O GLU A 340 N PHE A 326 SHEET 1 I 2 ALA A 348 VAL A 351 0 SHEET 2 I 2 PRO A 358 GLU A 360 -1 O VAL A 359 N LYS A 350 SHEET 1 J 2 ILE A 371 MET A 373 0 SHEET 2 J 2 GLY A 404 TYR A 406 -1 O GLY A 404 N MET A 373 SHEET 1 K 4 SER A 387 ASN A 389 0 SHEET 2 K 4 LEU A 394 GLU A 401 -1 O TYR A 396 N SER A 387 SHEET 3 K 4 SER A 437 ASP A 444 -1 O TRP A 443 N VAL A 395 SHEET 4 K 4 LYS A 449 TYR A 456 -1 O ALA A 451 N ALA A 442
SSBOND 1 CYS A 105 CYS A 106 1555 1555 2.05
LINK NE2 HIS A 595 FE HEM A 901 1555 1555 2.07 LINK SG CYS A 591 CAB HEM A 901 1555 1555 1.82 LINK SG CYS A 594 CAC HEM A 901 1555 1555 1.86 LINK CA CA A 802 OD2 ASP A 295 1555 1555 2.70 LINK CA CA A 802 O7A PQQ A 801 1555 1555 2.44 LINK CA CA A 802 OE1 GLU A 173 1555 1555 2.44 LINK CA CA A 802 O5 PQQ A 801 1555 1555 2.32 LINK CA CA A 802 N6 PQQ A 801 1555 1555 2.46 LINK CA CA A 802 OE2 GLU A 173 1555 1555 2.47 LINK CA CA A 802 OD1 ASN A 250 1555 1555 2.56 LINK FE HEM A 901 SD MET A 633 1555 1555 2.34
CISPEP 1 SER A 252 PRO A 253 0 -0.44 CISPEP 2 LEU A 267 TYR A 268 0 2.05 CISPEP 3 TRP A 374 PRO A 375 0 -0.25
SITE 1 AC1 4 GLU A 173 ASN A 250 ASP A 295 PQQ A 801 SITE 1 AC2 24 GLU A 59 CYS A 105 CYS A 106 VAL A 109 SITE 2 AC2 24 ARG A 111 THR A 155 GLY A 170 GLY A 171 SITE 3 AC2 24 ALA A 172 GLU A 173 THR A 230 TRP A 232 SITE 4 AC2 24 ASN A 250 ASP A 295 LYS A 322 ASN A 382 SITE 5 AC2 24 TRP A 383 TRP A 460 GLY A 524 VAL A 525 SITE 6 AC2 24 CA A 802 ACN A 803 HOH A1114 HOH A1210 SITE 1 AC3 21 ALA A 101 ARG A 102 PHE A 590 CYS A 591 SITE 2 AC3 21 CYS A 594 HIS A 595 ILE A 605 PRO A 606 SITE 3 AC3 21 LEU A 608 SER A 611 PHE A 619 VAL A 623 SITE 4 AC3 21 LEU A 631 MET A 633 PHE A 636 LEU A 640 SITE 5 AC3 21 HOH A1091 HOH A1139 HOH A1242 HOH A1362 SITE 6 AC3 21 HOH A1514 SITE 1 AC4 11 TRP A 48 ALA A 83 ALA A 84 SER A 85 SITE 2 AC4 11 TYR A 515 HOH A1178 HOH A1528 HOH A1614 SITE 3 AC4 11 HOH A1683 HOH A1687 HOH A1735 SITE 1 AC5 5 GLU A 173 ASP A 295 LYS A 322 PRO A 377 SITE 2 AC5 5 PQQ A 801 SITE 1 AC6 5 ASP A 51 LEU A 52 SER A 543 HOH A1392 SITE 2 AC6 5 HOH A1531
CRYST1 54.807 57.437 67.523 89.65 69.34 68.39 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018246 -0.007228 -0.007989 0.00000
SCALE2 0.000000 0.018727 0.002692 0.00000
SCALE3 0.000000 0.000000 0.015990 0.00000