1KP7 - Header Asymmetric Unit

HEADER RNA 29-DEC-01 1KP7

TITLE CONSERVED RNA STRUCTURE WITHIN THE HCV IRES EIF3 BINDING TITLE 2 SITE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE COMPND 3 FRAGMENT; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SUB-DOMAIN IIIB FRAGMENT

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: T7 POLYMERASE RNA SYNTHESIS

KEYWDS CYTOSINE MISMATCH, EIF3, HCV, INTERNAL LOOP, IRES, S-TURN

EXPDTA SOLUTION NMR

AUTHOR J.GALLEGO,R.KLINCK,A.J.COLLIER,P.T.COLE,S.J.HARRIS, AUTHOR 2 G.P.HARRISON,F.ABOUL-ELA,S.WALKER,G.VARANI

REVDAT 4 24-FEB-09 1KP7 1 VERSN REVDAT 3 01-APR-03 1KP7 1 JRNL REVDAT 2 01-MAY-02 1KP7 1 JRNL REVDAT 1 10-APR-02 1KP7 0

JRNL AUTH A.J.COLLIER,J.GALLEGO,R.KLINCK,P.T.COLE,S.J.HARRIS, JRNL AUTH 2 G.P.HARRISON,F.ABOUL-ELA,G.VARANI,S.WALKER JRNL TITL A CONSERVED RNA STRUCTURE WITHIN THE HCV IRES JRNL TITL 2 EIF3-BINDING SITE. JRNL REF NAT.STRUCT.BIOL. V. 9 375 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 11927954

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1KP7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-02. REMARK 100 THE RCSB ID CODE IS RCSB015193.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 10 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4 MM RNA, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER, 0.1MM EDTA; REMARK 210 0.9 MM U-15N,13C RNA, 10MM REMARK 210 SODIUM PHOSPHATE BUFFER, 0.1MM REMARK 210 EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, TOCSY, H- REMARK 210 P HETCOR, 3D C-EDITED NOESY, REMARK 210 HCCH COSY, HCP, C-EDITED H-P REMARK 210 HETCOR, C-EDITED TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 26 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY-MINIMIZED AVERAGE OF REMARK 210 26 CONVERGED CONFORMERS WITH REMARK 210 LOW ENERGY AND LOW RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 4 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 A A 9 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 G A 11 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 11 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 G A 18 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 18 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 G A 19 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 19 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 A A 20 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 G A 21 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 21 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 A A 22 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 G A 24 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 G A 24 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 A A 25 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 G A 28 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 G A 28 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL

DBREF 1KP7 A 1 30 PDB 1KP7 1KP7 1 30

SEQRES 1 A 30 G G C G C U C A A U G C U SEQRES 2 A 30 C U U C G G A G A C G A C SEQRES 3 A 30 C G C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000