10 20 30 40 50 60 70 80 1KO7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE,HYDROLASE 20-DEC-01 1KO7
TITLE X-RAY STRUCTURE OF THE HPR KINASE/PHOSPHATASE FROM TITLE 2 STAPHYLOCOCCUS XYLOSUS AT 1.95 A RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HPR KINASE/PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.-, 3.1.3.-; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS XYLOSUS; SOURCE 3 ORGANISM_TAXID: 1288; SOURCE 4 GENE: HPRK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) (STRATAGENE); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A (NOVAGEN)
KEYWDS PROTEIN KINASE, PHOSPHOTRANSFER, PROTEIN PHOSPHATASE, DUAL KEYWDS 2 ACTIVITY, PRODUCT, SUBSTRATE, TRANSFERASE, HYDROLASE, KEYWDS 3 TRANSFERASE,HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.A.MARQUEZ,S.HASENBEIN,B.KOCH,S.FIEULAINE,S.NESSLER, AUTHOR 2 W.HENGSTENBERG,K.SCHEFFZEK
REVDAT 2 24-FEB-09 1KO7 1 VERSN REVDAT 1 03-APR-02 1KO7 0
JRNL AUTH J.A.MARQUEZ,S.HASENBEIN,B.KOCH,S.FIEULAINE, JRNL AUTH 2 S.NESSLER,R.B.RUSSELL,W.HENGSTENBERG,K.SCHEFFZEK JRNL TITL STRUCTURE OF THE FULL-LENGTH HPR JRNL TITL 2 KINASE/PHOSPHATASE FROM STAPHYLOCOCCUS XYLOSUS AT JRNL TITL 3 1.95 A RESOLUTION: MIMICKING THE PRODUCT/SUBSTRATE JRNL TITL 4 OF THE PHOSPHO TRANSFER REACTIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 3458 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11904409 JRNL DOI 10.1073/PNAS.052461499
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 62857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6286 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9345 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1038 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.76 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 46.70 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KO7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JAN-02. REMARK 100 THE RCSB ID CODE IS RCSB015166.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99867 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) OR REMARK 200 SI(311) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 64.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1JB1 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM-POTASSIUM PHOSPHATE PH REMARK 280 7.6, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 76.12000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.94790 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.89533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 76.12000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.94790 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.89533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 76.12000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.94790 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.89533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 76.12000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 43.94790 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.89533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 76.12000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 43.94790 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.89533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 76.12000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 43.94790 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.89533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.89580 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 129.79067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 87.89580 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 129.79067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 87.89580 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 129.79067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 87.89580 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 129.79067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 87.89580 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 129.79067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 87.89580 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 129.79067 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGYCALLY RELEVANT STRUCTURE IS AN HEXAMER FORMED REMARK 300 BY THREE EQUIVALENT DIMERS THAT LAY IN ADJACENT ASYMMETRIC REMARK 300 UNITS. SYMMOP 2, SHIFT -1-1 0 SYMMOP 3, SHIFT 0-1 0
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 228.36000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 131.84371 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 263.68741 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 228.36000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 131.84371 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 263.68741 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 233 REMARK 465 HIS A 234 REMARK 465 LYS A 235 REMARK 465 GLU A 236 REMARK 465 LYS A 237 REMARK 465 LEU A 238 REMARK 465 TYR A 239 REMARK 465 ASP A 240 REMARK 465 ARG A 241 REMARK 465 VAL A 242 REMARK 465 GLY A 243 REMARK 465 LEU A 244 REMARK 465 ASN A 245 REMARK 465 ALA A 299 REMARK 465 GLU A 300 REMARK 465 ILE A 301 REMARK 465 LEU A 302 REMARK 465 ARG A 303 REMARK 465 ASN A 304 REMARK 465 GLY A 305 REMARK 465 ASN A 306 REMARK 465 ASN A 307 REMARK 465 GLY A 308 REMARK 465 ASN A 309 REMARK 465 ASN A 310 REMARK 465 GLY A 311 REMARK 465 GLU A 312 REMARK 465 GLU A 313 REMARK 465 LYS A 314 REMARK 465 TRP B 233 REMARK 465 HIS B 234 REMARK 465 LYS B 235 REMARK 465 GLU B 236 REMARK 465 LYS B 237 REMARK 465 LEU B 238 REMARK 465 TYR B 239 REMARK 465 ASP B 240 REMARK 465 ARG B 241 REMARK 465 VAL B 242 REMARK 465 GLY B 243 REMARK 465 LEU B 244 REMARK 465 ASN B 245 REMARK 465 ALA B 299 REMARK 465 GLU B 300 REMARK 465 ILE B 301 REMARK 465 LEU B 302 REMARK 465 ARG B 303 REMARK 465 ASN B 304 REMARK 465 GLY B 305 REMARK 465 ASN B 306 REMARK 465 ASN B 307 REMARK 465 GLY B 308 REMARK 465 ASN B 309 REMARK 465 ASN B 310 REMARK 465 GLY B 311 REMARK 465 GLU B 312 REMARK 465 GLU B 313 REMARK 465 LYS B 314
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 136 OD1 ASP A 175 2.07 REMARK 500 ND1 HIS A 136 O ASP A 175 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 477 O HOH A 477 3675 1.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 88 18.57 56.07 REMARK 500 ASP A 175 -61.88 67.61 REMARK 500 SER A 183 49.82 -144.22 REMARK 500 ASP A 185 -1.58 -159.97 REMARK 500 HIS A 197 -1.88 75.63 REMARK 500 LEU A 252 -117.91 54.35 REMARK 500 ARG B 88 28.18 48.22 REMARK 500 ASP B 175 -74.40 64.44 REMARK 500 HIS B 197 -0.13 74.82 REMARK 500 LEU B 252 -122.78 58.28 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 445 DISTANCE = 7.05 ANGSTROMS
REMARK 600 REMARK 600 HETEROGEN TWO PHOSPHATE IONS IN THE P-LOOP REGIONS MIMIC THE REMARK 600 SUBSTRATE/PRODUCT STATE OF THE PHOSPHO TRANSFER REACTIONS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 315 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 315 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 316 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 317 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 316 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 317
DBREF 1KO7 A 1 314 UNP Q9S1H5 HPRK_STAXY 1 314 DBREF 1KO7 B 1 314 UNP Q9S1H5 HPRK_STAXY 1 314
SEQRES 1 A 314 MET LEU THR THR LYS SER LEU VAL GLU ARG PHE GLU LEU SEQRES 2 A 314 GLU MET ILE ALA GLY GLU ALA GLY LEU ASN LYS GLN ILE SEQRES 3 A 314 LYS ASN THR ASP ILE SER ARG PRO GLY LEU GLU MET ALA SEQRES 4 A 314 GLY TYR PHE SER HIS TYR ALA SER ASP ARG ILE GLN LEU SEQRES 5 A 314 LEU GLY THR THR GLU LEU SER PHE TYR ASN LEU LEU PRO SEQRES 6 A 314 ASP GLU GLU ARG LYS GLY ARG MET ARG LYS LEU CYS ARG SEQRES 7 A 314 PRO GLU THR PRO ALA ILE ILE VAL THR ARG ASP LEU GLU SEQRES 8 A 314 PRO PRO GLU GLU LEU ILE GLU ALA ALA LYS GLU HIS GLU SEQRES 9 A 314 THR PRO LEU ILE THR SER LYS ILE ALA THR THR GLN LEU SEQRES 10 A 314 MET SER ARG LEU THR THR PHE LEU GLU HIS GLU LEU ALA SEQRES 11 A 314 ARG THR THR SER LEU HIS GLY VAL LEU VAL ASP VAL TYR SEQRES 12 A 314 GLY VAL GLY VAL LEU ILE THR GLY ASP SER GLY ILE GLY SEQRES 13 A 314 LYS SER GLU THR ALA LEU GLU LEU ILE LYS ARG GLY HIS SEQRES 14 A 314 ARG LEU VAL ALA ASP ASP ASN VAL GLU ILE ARG GLU ILE SEQRES 15 A 314 SER LYS ASP GLU LEU ILE GLY ARG ALA PRO LYS LEU ILE SEQRES 16 A 314 GLU HIS LEU LEU GLU ILE ARG GLY LEU GLY ILE ILE ASN SEQRES 17 A 314 VAL MET THR LEU PHE GLY ALA GLY SER ILE LEU THR GLU SEQRES 18 A 314 LYS ARG LEU ARG LEU ASN ILE HIS LEU GLU ASN TRP HIS SEQRES 19 A 314 LYS GLU LYS LEU TYR ASP ARG VAL GLY LEU ASN GLU GLU SEQRES 20 A 314 THR LEU ARG ILE LEU ASP THR GLU ILE THR LYS LYS THR SEQRES 21 A 314 ILE PRO VAL ARG PRO GLY ARG ASN VAL ALA VAL ILE ILE SEQRES 22 A 314 GLU VAL ALA ALA MET ASN TYR ARG LEU ASN ILE MET GLY SEQRES 23 A 314 ILE ASN THR ALA GLU GLU PHE ASN ASP ARG LEU ASN ALA SEQRES 24 A 314 GLU ILE LEU ARG ASN GLY ASN ASN GLY ASN ASN GLY GLU SEQRES 25 A 314 GLU LYS SEQRES 1 B 314 MET LEU THR THR LYS SER LEU VAL GLU ARG PHE GLU LEU SEQRES 2 B 314 GLU MET ILE ALA GLY GLU ALA GLY LEU ASN LYS GLN ILE SEQRES 3 B 314 LYS ASN THR ASP ILE SER ARG PRO GLY LEU GLU MET ALA SEQRES 4 B 314 GLY TYR PHE SER HIS TYR ALA SER ASP ARG ILE GLN LEU SEQRES 5 B 314 LEU GLY THR THR GLU LEU SER PHE TYR ASN LEU LEU PRO SEQRES 6 B 314 ASP GLU GLU ARG LYS GLY ARG MET ARG LYS LEU CYS ARG SEQRES 7 B 314 PRO GLU THR PRO ALA ILE ILE VAL THR ARG ASP LEU GLU SEQRES 8 B 314 PRO PRO GLU GLU LEU ILE GLU ALA ALA LYS GLU HIS GLU SEQRES 9 B 314 THR PRO LEU ILE THR SER LYS ILE ALA THR THR GLN LEU SEQRES 10 B 314 MET SER ARG LEU THR THR PHE LEU GLU HIS GLU LEU ALA SEQRES 11 B 314 ARG THR THR SER LEU HIS GLY VAL LEU VAL ASP VAL TYR SEQRES 12 B 314 GLY VAL GLY VAL LEU ILE THR GLY ASP SER GLY ILE GLY SEQRES 13 B 314 LYS SER GLU THR ALA LEU GLU LEU ILE LYS ARG GLY HIS SEQRES 14 B 314 ARG LEU VAL ALA ASP ASP ASN VAL GLU ILE ARG GLU ILE SEQRES 15 B 314 SER LYS ASP GLU LEU ILE GLY ARG ALA PRO LYS LEU ILE SEQRES 16 B 314 GLU HIS LEU LEU GLU ILE ARG GLY LEU GLY ILE ILE ASN SEQRES 17 B 314 VAL MET THR LEU PHE GLY ALA GLY SER ILE LEU THR GLU SEQRES 18 B 314 LYS ARG LEU ARG LEU ASN ILE HIS LEU GLU ASN TRP HIS SEQRES 19 B 314 LYS GLU LYS LEU TYR ASP ARG VAL GLY LEU ASN GLU GLU SEQRES 20 B 314 THR LEU ARG ILE LEU ASP THR GLU ILE THR LYS LYS THR SEQRES 21 B 314 ILE PRO VAL ARG PRO GLY ARG ASN VAL ALA VAL ILE ILE SEQRES 22 B 314 GLU VAL ALA ALA MET ASN TYR ARG LEU ASN ILE MET GLY SEQRES 23 B 314 ILE ASN THR ALA GLU GLU PHE ASN ASP ARG LEU ASN ALA SEQRES 24 B 314 GLU ILE LEU ARG ASN GLY ASN ASN GLY ASN ASN GLY GLU SEQRES 25 B 314 GLU LYS
HET PO4 A 315 5 HET PO4 B 315 5 HET PO4 A 316 5 HET PO4 A 317 5 HET PO4 B 316 5 HET PO4 B 317 5
HETNAM PO4 PHOSPHATE ION
FORMUL 3 PO4 6(O4 P 3-) FORMUL 9 HOH *292(H2 O)
HELIX 1 1 THR A 3 GLU A 12 1 10 HELIX 2 2 GLY A 18 LEU A 22 5 5 HELIX 3 3 PRO A 34 ALA A 39 1 6 HELIX 4 4 GLY A 54 LEU A 64 1 11 HELIX 5 5 PRO A 65 LYS A 70 1 6 HELIX 6 6 GLY A 71 CYS A 77 1 7 HELIX 7 7 PRO A 93 HIS A 103 1 11 HELIX 8 8 ALA A 113 LEU A 129 1 17 HELIX 9 9 GLY A 156 ARG A 167 1 12 HELIX 10 10 PRO A 192 GLU A 196 5 5 HELIX 11 11 VAL A 209 GLY A 214 1 6 HELIX 12 12 ALA A 215 ILE A 218 5 4 HELIX 13 13 ASN A 268 MET A 285 1 18 HELIX 14 14 ASN A 288 ASN A 298 1 11 HELIX 15 15 THR B 3 GLU B 12 1 10 HELIX 16 16 GLY B 18 LEU B 22 5 5 HELIX 17 17 PRO B 34 ALA B 39 1 6 HELIX 18 18 GLY B 54 ASN B 62 1 9 HELIX 19 19 PRO B 65 LYS B 70 1 6 HELIX 20 20 GLY B 71 CYS B 77 1 7 HELIX 21 21 PRO B 93 HIS B 103 1 11 HELIX 22 22 ALA B 113 LEU B 129 1 17 HELIX 23 23 GLY B 156 ARG B 167 1 12 HELIX 24 24 PRO B 192 GLU B 196 5 5 HELIX 25 25 VAL B 209 GLY B 214 1 6 HELIX 26 26 ALA B 215 ILE B 218 5 4 HELIX 27 27 ASN B 268 MET B 285 1 18 HELIX 28 28 ASN B 288 LEU B 297 1 10
SHEET 1 A 5 GLU A 14 ALA A 17 0 SHEET 2 A 5 LEU A 107 THR A 109 -1 O LEU A 107 N ALA A 17 SHEET 3 A 5 ILE A 84 VAL A 86 1 N VAL A 86 O ILE A 108 SHEET 4 A 5 ILE A 50 LEU A 53 1 N GLN A 51 O ILE A 85 SHEET 5 A 5 ILE A 31 SER A 32 1 N SER A 32 O LEU A 52 SHEET 1 B 4 ARG A 131 HIS A 136 0 SHEET 2 B 4 ASN A 176 GLU A 181 -1 O GLU A 181 N ARG A 131 SHEET 3 B 4 LEU A 187 ARG A 190 -1 O ARG A 190 N GLU A 178 SHEET 4 B 4 GLU A 221 ARG A 223 -1 O LYS A 222 N GLY A 189 SHEET 1 C 6 ARG A 170 ALA A 173 0 SHEET 2 C 6 VAL A 138 VAL A 142 -1 N ASP A 141 O ARG A 170 SHEET 3 C 6 VAL A 145 GLY A 151 -1 O ILE A 149 N VAL A 138 SHEET 4 C 6 LEU A 226 GLU A 231 1 O LEU A 230 N THR A 150 SHEET 5 C 6 THR A 254 PRO A 262 1 O THR A 257 N ASN A 227 SHEET 6 C 6 GLU A 247 ILE A 251 -1 N ILE A 251 O THR A 254 SHEET 1 D 2 LEU A 198 ILE A 201 0 SHEET 2 D 2 GLY A 205 ASN A 208 -1 O GLY A 205 N ILE A 201 SHEET 1 E 5 GLU B 14 ALA B 17 0 SHEET 2 E 5 LEU B 107 THR B 109 -1 O LEU B 107 N ALA B 17 SHEET 3 E 5 ILE B 84 VAL B 86 1 N VAL B 86 O ILE B 108 SHEET 4 E 5 ILE B 50 LEU B 53 1 N GLN B 51 O ILE B 85 SHEET 5 E 5 ILE B 31 SER B 32 1 N SER B 32 O LEU B 52 SHEET 1 F 4 ARG B 131 HIS B 136 0 SHEET 2 F 4 ASN B 176 SER B 183 -1 O ILE B 179 N THR B 133 SHEET 3 F 4 GLU B 186 ARG B 190 -1 O ARG B 190 N GLU B 178 SHEET 4 F 4 GLU B 221 ARG B 223 -1 O LYS B 222 N GLY B 189 SHEET 1 G 6 ARG B 170 ALA B 173 0 SHEET 2 G 6 VAL B 138 VAL B 142 -1 N ASP B 141 O ARG B 170 SHEET 3 G 6 VAL B 145 GLY B 151 -1 O ILE B 149 N VAL B 138 SHEET 4 G 6 LEU B 226 GLU B 231 1 O LEU B 230 N THR B 150 SHEET 5 G 6 THR B 254 PRO B 262 1 O LYS B 259 N HIS B 229 SHEET 6 G 6 GLU B 247 ILE B 251 -1 N ILE B 251 O THR B 254 SHEET 1 H 2 LEU B 198 ILE B 201 0 SHEET 2 H 2 GLY B 205 ASN B 208 -1 O GLY B 205 N ILE B 201
SITE 1 AC1 8 ARG A 33 THR A 55 THR A 56 ARG A 88 SITE 2 AC1 8 THR A 114 HOH A 329 TYR B 45 ARG B 49 SITE 1 AC2 8 ARG A 49 ARG A 250 ARG B 33 THR B 55 SITE 2 AC2 8 THR B 56 ARG B 88 THR B 114 HOH B 319 SITE 1 AC3 8 GLY A 154 ILE A 155 GLY A 156 LYS A 157 SITE 2 AC3 8 SER A 158 GLU A 159 PO4 A 317 HOH A 438 SITE 1 AC4 6 HIS A 136 SER A 153 GLY A 154 LYS A 157 SITE 2 AC4 6 PO4 A 316 HOH A 428 SITE 1 AC5 9 GLY B 154 ILE B 155 GLY B 156 LYS B 157 SITE 2 AC5 9 SER B 158 GLU B 159 ARG B 202 PO4 B 317 SITE 3 AC5 9 HOH B 341 SITE 1 AC6 5 HIS B 136 SER B 153 LYS B 157 ARG B 202 SITE 2 AC6 5 PO4 B 316
CRYST1 152.240 152.240 194.686 90.00 90.00 120.00 H 3 2 36
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006569 0.003792 0.000000 0.00000
SCALE2 0.000000 0.007585 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005136 0.00000