10 20 30 40 50 60 70 80 1KJK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 04-DEC-01 1KJK
TITLE SOLUTION STRUCTURE OF THE LAMBDA INTEGRASE AMINO-TERMINAL TITLE 2 DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN (RESIDUES 1-64); COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIMC104
KEYWDS DNA RECOMBINATION, INTEGRASE, THREE-STRANDED BETA-SHEET, KEYWDS 2 DNA-BINDING DOMAIN, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR J.M.WOJCIAK,D.SARKAR,A.LANDY,R.T.CLUBB
REVDAT 2 24-FEB-09 1KJK 1 VERSN REVDAT 1 27-MAR-02 1KJK 0
JRNL AUTH J.M.WOJCIAK,D.SARKAR,A.LANDY,R.T.CLUBB JRNL TITL ARM-SITE BINDING BY LAMBDA -INTEGRASE: SOLUTION JRNL TITL 2 STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF ITS JRNL TITL 3 AMINO-TERMINAL DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 3434 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 11904406 JRNL DOI 10.1073/PNAS.052017999
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KJK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB015017.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1MM INTEGRASE U-15N,13C; 20MM REMARK 210 PO4 (PH 6.0), 100MM NACL, 10MM REMARK 210 DTT, 0.01% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, REMARK 210 QUANTITATIVE J CORRELATION REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE SGI6X, PIPP/CAPP/ REMARK 210 STAPP 4.1.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 LYS A 60 REMARK 465 HIS A 61 REMARK 465 LYS A 62 REMARK 465 PRO A 63 REMARK 465 LEU A 64
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 15 -17.35 70.84 REMARK 500 2 PRO A 13 145.43 -35.59 REMARK 500 2 LEU A 37 -69.56 -104.79 REMARK 500 2 SER A 57 53.63 -165.28 REMARK 500 3 ASN A 15 -9.35 61.70 REMARK 500 3 LEU A 37 -61.27 -102.53 REMARK 500 3 SER A 57 80.39 -154.44 REMARK 500 4 PRO A 13 158.84 -35.41 REMARK 500 4 LYS A 33 -161.97 -75.99 REMARK 500 4 SER A 57 47.75 -95.04 REMARK 500 5 ASN A 15 4.21 57.05 REMARK 500 5 SER A 57 59.58 -99.85 REMARK 500 6 PRO A 13 157.27 -40.21 REMARK 500 6 ASN A 15 -11.27 69.00 REMARK 500 6 SER A 57 18.07 49.78 REMARK 500 7 PRO A 13 154.94 -37.87 REMARK 500 7 ASN A 15 6.50 54.71 REMARK 500 8 PRO A 13 156.89 -40.60 REMARK 500 8 LYS A 33 -164.97 -74.76 REMARK 500 9 PRO A 13 158.78 -37.59 REMARK 500 9 ASN A 15 20.94 49.48 REMARK 500 9 ASN A 20 -8.85 -54.05 REMARK 500 9 SER A 57 19.17 53.93 REMARK 500 10 PRO A 13 157.24 -40.78 REMARK 500 10 LEU A 37 -73.87 -105.09 REMARK 500 10 SER A 57 -43.29 74.12 REMARK 500 11 PRO A 13 154.85 -35.29 REMARK 500 11 ASN A 15 -4.39 62.73 REMARK 500 11 LEU A 37 -71.48 -102.77 REMARK 500 11 SER A 57 69.61 -163.68 REMARK 500 12 PRO A 13 158.62 -36.14 REMARK 500 12 ASN A 15 10.43 52.27 REMARK 500 12 SER A 57 61.61 -167.97 REMARK 500 13 ASN A 15 8.69 55.64 REMARK 500 13 TYR A 17 -166.59 -127.38 REMARK 500 13 LEU A 37 -68.87 -99.15 REMARK 500 13 SER A 57 17.31 52.15 REMARK 500 14 PRO A 13 157.50 -34.94 REMARK 500 14 SER A 57 75.01 -151.89 REMARK 500 15 PRO A 13 158.74 -35.92 REMARK 500 15 ASN A 15 1.25 59.71 REMARK 500 15 LYS A 33 -166.09 -75.25 REMARK 500 15 SER A 57 70.36 -153.61 REMARK 500 16 ASN A 15 -15.83 73.34 REMARK 500 16 PRO A 29 0.82 -58.41 REMARK 500 16 SER A 57 39.13 -164.54 REMARK 500 17 ASN A 15 19.61 59.96 REMARK 500 17 LEU A 37 -63.80 -99.08 REMARK 500 17 SER A 57 -32.45 -170.50 REMARK 500 18 ASN A 15 -10.49 74.19 REMARK 500 18 SER A 57 71.74 -152.47 REMARK 500 19 ASN A 15 -10.78 62.58 REMARK 500 19 LEU A 37 -62.87 -103.74 REMARK 500 20 PRO A 13 158.31 -34.31 REMARK 500 20 ASN A 15 19.95 53.55 REMARK 500 20 SER A 57 46.08 -144.01 REMARK 500 21 ASN A 15 9.12 52.75 REMARK 500 21 TYR A 17 -157.07 -138.20 REMARK 500 21 ASN A 20 -8.44 -56.23 REMARK 500 21 SER A 57 14.22 52.94 REMARK 500 22 ASN A 15 22.50 48.19 REMARK 500 22 LEU A 37 -70.09 -106.59 REMARK 500 22 SER A 57 52.90 -173.68 REMARK 500 23 PRO A 13 156.42 -38.31 REMARK 500 23 ASN A 15 -1.83 65.59 REMARK 500 23 LEU A 37 -63.04 -100.56 REMARK 500 23 SER A 57 35.84 -163.01 REMARK 500 24 ASN A 15 -8.02 67.07 REMARK 500 24 LYS A 33 -169.35 -74.10 REMARK 500 24 SER A 57 66.91 -157.74 REMARK 500 25 ASN A 15 15.65 51.01 REMARK 500 25 SER A 57 30.59 75.16 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1KJK A 1 64 UNP P03700 VINT_LAMBD 1 64
SEQRES 1 A 64 MET GLY ARG ARG ARG SER HIS GLU ARG ARG ASP LEU PRO SEQRES 2 A 64 PRO ASN LEU TYR ILE ARG ASN ASN GLY TYR TYR CYS TYR SEQRES 3 A 64 ARG ASP PRO ARG THR GLY LYS GLU PHE GLY LEU GLY ARG SEQRES 4 A 64 ASP ARG ARG ILE ALA ILE THR GLU ALA ILE GLN ALA ASN SEQRES 5 A 64 ILE GLU LEU PHE SER GLY HIS LYS HIS LYS PRO LEU
HELIX 1 1 ASP A 40 GLY A 58 1 19
SHEET 1 A 3 LEU A 16 ILE A 18 0 SHEET 2 A 3 TYR A 24 ARG A 27 -1 O CYS A 25 N TYR A 17 SHEET 3 A 3 GLU A 34 GLY A 38 -1 O GLY A 38 N TYR A 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000