10 20 30 40 50 60 70 80 1KJ6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIBIOTIC 04-DEC-01 1KJ6
TITLE SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BD-3, HBD-3; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS DEFENSIN, ANTIMICROBIAL PROTEIN, HUMAN BETA-DEFENSIN 3, KEYWDS 2 BETA-DEFENSIN, HBD3, ANTIBIOTIC
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER,J.M.WIENCEK, AUTHOR 2 P.B.MCCRAY JR.,B.F.TACK,H.J.VOGEL
REVDAT 2 24-FEB-09 1KJ6 1 VERSN REVDAT 1 20-MAR-02 1KJ6 0
JRNL AUTH D.J.SCHIBLI,H.N.HUNTER,V.ASEYEV,T.D.STARNER, JRNL AUTH 2 J.M.WIENCEK,P.B.MCCRAY JR.,B.F.TACK,H.J.VOGEL JRNL TITL THE SOLUTION STRUCTURES OF THE HUMAN JRNL TITL 2 BETA-DEFENSINS LEAD TO A BETTER UNDERSTANDING OF JRNL TITL 3 THE POTENT BACTERICIDAL ACTIVITY OF HBD3 AGAINST JRNL TITL 4 STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 277 8279 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11741980 JRNL DOI 10.1074/JBC.M108830200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, ARIA 1.0 REMARK 3 AUTHORS : A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, W.L.DELANO, REMARK 3 P.GROS, R.W.GROSSE-KUNSTLEVE, J.-S.JIANG, REMARK 3 J.KUSZEWSKI, M.NILGES, N.S.PANNU, R.J.READ, REMARK 3 L.M.RICE, T.SIMONSON, G.L.WARREN (CNS), J.LINGE, REMARK 3 S.O'DONOGHUE, M.NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KJ6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB015008.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.00 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.36 MM HBD3; 0.36 MM HBD3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 2D COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 1.8, REMARK 210 NMRVIEW 4.1.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 42.76 -161.80 REMARK 500 1 TYR A 9 21.40 -154.78 REMARK 500 1 ARG A 14 36.19 -174.78 REMARK 500 1 LEU A 21 -68.27 -130.62 REMARK 500 1 SER A 34 -97.31 -151.78 REMARK 500 1 THR A 35 -27.51 -171.59 REMARK 500 1 ARG A 36 108.56 -166.73 REMARK 500 2 ASN A 4 46.28 -106.50 REMARK 500 2 LEU A 6 43.46 -109.67 REMARK 500 2 TYR A 9 28.32 -155.92 REMARK 500 2 ARG A 14 52.86 -168.50 REMARK 500 2 LEU A 21 -80.18 -114.64 REMARK 500 2 CYS A 23 162.63 -48.45 REMARK 500 2 PRO A 25 24.48 -71.21 REMARK 500 2 LYS A 26 20.99 -146.51 REMARK 500 2 ARG A 43 131.19 -39.20 REMARK 500 3 TYR A 9 36.17 -156.49 REMARK 500 3 ARG A 14 26.73 -152.08 REMARK 500 3 LEU A 21 -70.52 -120.75 REMARK 500 3 CYS A 23 174.74 -59.60 REMARK 500 4 LEU A 6 49.16 -92.76 REMARK 500 4 TYR A 9 30.26 -155.65 REMARK 500 4 ARG A 14 25.67 -168.15 REMARK 500 4 LEU A 21 -60.90 -132.71 REMARK 500 4 CYS A 23 173.49 -57.66 REMARK 500 4 CYS A 33 -83.02 -51.48 REMARK 500 4 ARG A 36 109.52 -48.73 REMARK 500 5 THR A 5 -159.71 -137.69 REMARK 500 5 TYR A 9 17.74 -155.62 REMARK 500 5 ARG A 14 61.78 -152.79 REMARK 500 5 LEU A 21 -80.67 -129.88 REMARK 500 5 CYS A 23 172.65 -55.22 REMARK 500 5 PRO A 25 27.53 -74.42 REMARK 500 5 LYS A 26 11.05 -146.86 REMARK 500 5 ARG A 36 -79.97 -72.78 REMARK 500 6 TYR A 9 25.37 -154.91 REMARK 500 6 ARG A 14 -72.50 -165.22 REMARK 500 6 LEU A 21 -69.56 -131.93 REMARK 500 6 CYS A 23 171.37 -54.70 REMARK 500 6 PRO A 25 27.37 -71.98 REMARK 500 6 LYS A 26 15.00 -146.83 REMARK 500 6 SER A 34 -77.60 -106.70 REMARK 500 6 THR A 35 -33.38 -169.43 REMARK 500 6 ARG A 36 -10.87 -166.90 REMARK 500 7 ASN A 4 -61.76 -92.77 REMARK 500 7 THR A 5 -80.44 -139.17 REMARK 500 7 LEU A 6 43.33 -168.86 REMARK 500 7 TYR A 9 28.06 -154.56 REMARK 500 7 ARG A 14 46.79 -156.64 REMARK 500 7 LEU A 21 -66.68 -125.37 REMARK 500 7 CYS A 23 152.09 -48.75 REMARK 500 7 ARG A 36 -74.42 -107.31 REMARK 500 8 ASN A 4 -70.48 -143.75 REMARK 500 8 THR A 5 -167.13 -101.28 REMARK 500 8 TYR A 9 16.61 -153.49 REMARK 500 8 ARG A 14 46.69 -175.09 REMARK 500 8 LEU A 21 -63.94 -129.23 REMARK 500 8 CYS A 23 172.19 -57.29 REMARK 500 8 SER A 34 -98.18 -139.53 REMARK 500 8 THR A 35 -43.07 -136.16 REMARK 500 8 ARG A 36 -12.08 -161.93 REMARK 500 9 LEU A 6 41.21 -161.71 REMARK 500 9 TYR A 9 13.28 -154.33 REMARK 500 9 ARG A 14 -71.33 -144.35 REMARK 500 9 LEU A 21 -49.72 -135.13 REMARK 500 9 CYS A 23 176.39 -58.96 REMARK 500 9 PRO A 25 27.07 -75.61 REMARK 500 10 LEU A 6 41.17 -102.84 REMARK 500 10 TYR A 9 29.86 -155.14 REMARK 500 10 ARG A 14 33.66 -169.43 REMARK 500 10 LEU A 21 -80.34 -121.10 REMARK 500 10 LYS A 44 66.66 -119.65 REMARK 500 11 ASN A 4 51.61 -109.53 REMARK 500 11 LEU A 6 38.19 -88.94 REMARK 500 11 TYR A 9 34.67 -150.65 REMARK 500 11 ARG A 14 30.97 -164.35 REMARK 500 11 LEU A 21 -62.67 -130.98 REMARK 500 11 CYS A 23 171.45 -55.32 REMARK 500 11 PRO A 25 25.28 -71.34 REMARK 500 11 SER A 34 -163.84 -111.59 REMARK 500 12 ASN A 4 -73.59 -95.06 REMARK 500 12 TYR A 9 21.42 -152.73 REMARK 500 12 ARG A 14 -63.84 -160.98 REMARK 500 12 LEU A 21 -78.23 -120.77 REMARK 500 12 CYS A 23 174.82 -58.21 REMARK 500 13 TYR A 9 29.65 -157.19 REMARK 500 13 ARG A 14 -67.68 -149.24 REMARK 500 13 CYS A 23 172.57 -57.41 REMARK 500 13 SER A 34 -96.22 -138.86 REMARK 500 13 THR A 35 -63.42 -137.88 REMARK 500 13 ARG A 36 -20.76 -150.03 REMARK 500 14 TYR A 9 25.31 -154.89 REMARK 500 14 ARG A 14 42.12 -166.88 REMARK 500 14 LEU A 21 -40.36 -134.53 REMARK 500 14 ARG A 36 145.34 -171.60 REMARK 500 15 THR A 5 -88.67 -141.27 REMARK 500 15 LEU A 6 30.99 -172.23 REMARK 500 15 GLN A 7 0.55 -65.40 REMARK 500 15 TYR A 9 22.48 -154.75 REMARK 500 15 ARG A 14 -60.11 -156.03 REMARK 500 15 LEU A 21 -86.81 -129.27 REMARK 500 16 TYR A 9 15.09 -155.21 REMARK 500 16 ARG A 14 12.77 -156.40 REMARK 500 16 LEU A 21 -60.54 -127.13 REMARK 500 16 PRO A 25 22.47 -70.57 REMARK 500 16 LYS A 26 19.80 -144.01 REMARK 500 16 ARG A 36 103.26 -167.28 REMARK 500 17 LEU A 6 36.44 -97.00 REMARK 500 17 TYR A 9 17.38 -155.20 REMARK 500 17 ARG A 14 26.02 -144.97 REMARK 500 17 SER A 34 -83.86 -163.84 REMARK 500 17 THR A 35 -159.27 -133.12 REMARK 500 18 LEU A 6 40.71 -107.85 REMARK 500 18 TYR A 9 32.93 -156.19 REMARK 500 18 ARG A 14 19.81 -144.65 REMARK 500 18 LEU A 21 -51.94 -130.76 REMARK 500 18 PRO A 25 23.66 -73.56 REMARK 500 18 LYS A 26 22.26 -146.91 REMARK 500 18 SER A 34 -87.64 -138.28 REMARK 500 18 THR A 35 -160.94 -108.15 REMARK 500 19 ASN A 4 -65.31 -131.84 REMARK 500 19 TYR A 9 21.36 -155.48 REMARK 500 19 ARG A 14 -62.02 -161.81 REMARK 500 19 LEU A 21 -62.52 -128.46 REMARK 500 19 CYS A 23 173.70 -56.41 REMARK 500 19 SER A 34 -169.95 -124.05 REMARK 500 19 THR A 35 -75.87 -64.68 REMARK 500 20 ILE A 2 91.74 -66.98 REMARK 500 20 ASN A 4 -170.94 -66.39 REMARK 500 20 LEU A 6 58.24 -93.85 REMARK 500 20 TYR A 9 31.64 -154.86 REMARK 500 20 ARG A 14 33.11 -172.57 REMARK 500 20 LEU A 21 -77.94 -126.42 REMARK 500 20 CYS A 23 170.33 -56.18 REMARK 500 20 PRO A 25 23.57 -71.25 REMARK 500 20 LYS A 26 16.29 -147.13 REMARK 500 20 ARG A 36 107.80 -165.25 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KJ5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN BETA-DEFENSIN 1
DBREF 1KJ6 A 1 45 UNP P81534 D103A_HUMAN 23 67
SEQRES 1 A 45 GLY ILE ILE ASN THR LEU GLN LYS TYR TYR CYS ARG VAL SEQRES 2 A 45 ARG GLY GLY ARG CYS ALA VAL LEU SER CYS LEU PRO LYS SEQRES 3 A 45 GLU GLU GLN ILE GLY LYS CYS SER THR ARG GLY ARG LYS SEQRES 4 A 45 CYS CYS ARG ARG LYS LYS
HELIX 1 1 TYR A 9 GLY A 15 1 7
SHEET 1 A 3 ARG A 17 ALA A 19 0 SHEET 2 A 3 LYS A 39 ARG A 43 -1 O CYS A 41 N ARG A 17 SHEET 3 A 3 GLU A 27 GLY A 31 -1 N GLY A 31 O CYS A 40
SSBOND 1 CYS A 11 CYS A 40 1555 1555 2.03 SSBOND 2 CYS A 18 CYS A 33 1555 1555 2.03 SSBOND 3 CYS A 23 CYS A 41 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000