10 20 30 40 50 60 70 80 1KJ1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 04-DEC-01 1KJ1
TITLE MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM TITLE 2 SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN I; COMPND 3 CHAIN: A, P; COMPND 4 SYNONYM: MANNOSE-SPECIFIC AGGLUTININ; LECGNA 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LECTIN II; COMPND 7 CHAIN: D, Q; COMPND 8 SYNONYM: MANNOSE-SPECIFIC AGGLUTININ; LECGNA 2
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 3 ORGANISM_COMMON: GARLIC; SOURCE 4 ORGANISM_TAXID: 4682; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ALLIUM SATIVUM; SOURCE 7 ORGANISM_COMMON: GARLIC; SOURCE 8 ORGANISM_TAXID: 4682
KEYWDS BULB LECTIN, MANNOSE, PLANT PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR G.RAMACHANDRAIAH,N.R.CHANDRA,A.SUROLIA,M.VIJAYAN
REVDAT 2 24-FEB-09 1KJ1 1 VERSN REVDAT 1 22-FEB-02 1KJ1 0
JRNL AUTH G.RAMACHANDRAIAH,N.R.CHANDRA,A.SUROLIA,M.VIJAYAN JRNL TITL RE-REFINEMENT USING REPROCESSED DATA TO IMPROVE JRNL TITL 2 THE QUALITY OF THE STRUCTURE: A CASE STUDY JRNL TITL 3 INVOLVING GARLIC LECTIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 414 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 11856826 JRNL DOI 10.1107/S0907444901021497
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.R.CHANDRA,G.RAMACHANDRAIAH,K.BACHHAWAT,T.K.DAM, REMARK 1 AUTH 2 A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURE OF A DIMERIC MANNOSE-SPECIFIC REMARK 1 TITL 2 AGGLUTININ FROM GARLIC: QUATERNARY ASSOCIATION AND REMARK 1 TITL 3 CARBOHYDRATE SPECIFICITY REMARK 1 REF J.MOL.BIOL. V. 285 1157 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.2353 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.R.CHANDRA,T.K.DAM,A.SUROLIA,M.VIJAYAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 STUDIES ON THE MANNOSE-SPECIFIC LECTIN FROM GARLIC REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 53 787 1997 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444997007385
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 245621.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.1 REMARK 3 NUMBER OF REFLECTIONS : 27423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2649 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2538 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 256 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 168 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.41000 REMARK 3 B22 (A**2) : 15.40000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.41 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.73 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.930 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 51.35 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM3_MOD.CHO REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : TOPH3.CHO REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KJ1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB015003.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: SNOWDROP LECTIN (PDB ENTRY 1MSA) REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 5.5 MG/ML PROTEIN, REMARK 280 10MM MANNOSE, 20MM PBS, 1WEEK, PH 7.00, VAPOR DIFFUSION, REMARK 280 HANGING DROP AT 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.91550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.75800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.91550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.75800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA Q 12 O2 MAN P 310 4546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 6 123.83 -38.94 REMARK 500 GLU A 19 -136.88 55.97 REMARK 500 HIS A 36 -120.86 65.08 REMARK 500 GLU A 69 -84.37 -78.66 REMARK 500 ASN D 6 123.99 -39.23 REMARK 500 GLU D 19 133.17 -35.22 REMARK 500 HIS D 36 -107.46 70.22 REMARK 500 SER D 78 42.40 -105.33 REMARK 500 SER D 100 128.52 62.73 REMARK 500 TRP D 103 149.88 -170.32 REMARK 500 GLU P 19 -129.99 53.91 REMARK 500 HIS P 36 -111.23 59.55 REMARK 500 VAL P 79 118.85 -27.42 REMARK 500 ARG P 80 33.97 -142.37 REMARK 500 ASN P 82 161.13 -48.89 REMARK 500 SER P 100 148.81 52.27 REMARK 500 GLU Q 19 -82.93 22.84 REMARK 500 HIS Q 36 -101.50 65.04 REMARK 500 GLU Q 69 40.63 -105.40 REMARK 500 SER Q 100 154.46 50.68 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 469 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH D 518 DISTANCE = 5.36 ANGSTROMS REMARK 525 HOH A 532 DISTANCE = 5.66 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 300 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 301 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 302 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 303 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 304 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 305 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN D 306 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 307 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 308 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 309 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN P 310 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 311 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 312 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN Q 313
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BWU RELATED DB: PDB
DBREF 1KJ1 A 1 109 UNP Q38789 Q38789_ALLSA 177 284 DBREF 1KJ1 D 1 109 UNP Q38783 Q38783_ALLSA 29 137 DBREF 1KJ1 P 1 109 UNP Q38789 Q38789_ALLSA 177 284 DBREF 1KJ1 Q 1 109 UNP Q38783 Q38783_ALLSA 29 137
SEQADV 1KJ1 LEU A 3 UNP Q38789 ILE 179 CONFLICT SEQADV 1KJ1 THR A 5 UNP Q38789 ARG 181 CONFLICT SEQADV 1KJ1 GLY A 7 UNP Q38789 ASP 183 CONFLICT SEQADV 1KJ1 SER A 39 UNP Q38789 ALA 215 CONFLICT SEQADV 1KJ1 GLY A 46 UNP Q38789 ASP 222 CONFLICT SEQADV 1KJ1 LEU A 48 UNP Q38789 PRO 224 CONFLICT SEQADV 1KJ1 GLY A 106 UNP Q38789 ASP 282 CONFLICT SEQADV 1KJ1 LYS A 109 UNP Q38789 ARG 285 CONFLICT SEQADV 1KJ1 LEU P 3 UNP Q38789 ILE 179 CONFLICT SEQADV 1KJ1 THR P 5 UNP Q38789 ARG 181 CONFLICT SEQADV 1KJ1 GLY P 7 UNP Q38789 ASP 183 CONFLICT SEQADV 1KJ1 SER P 39 UNP Q38789 ALA 215 CONFLICT SEQADV 1KJ1 GLY P 46 UNP Q38789 ASP 222 CONFLICT SEQADV 1KJ1 LEU P 48 UNP Q38789 PRO 224 CONFLICT SEQADV 1KJ1 GLY P 106 UNP Q38789 ASP 282 CONFLICT SEQADV 1KJ1 LYS P 109 UNP Q38789 ARG 285 CONFLICT SEQADV 1KJ1 THR D 43 UNP Q38783 SER 67 CONFLICT SEQADV 1KJ1 THR Q 43 UNP Q38783 SER 67 CONFLICT
SEQRES 1 A 109 ARG ASN LEU LEU THR ASN GLY GLU GLY LEU TYR ALA GLY SEQRES 2 A 109 GLN SER LEU ASP VAL GLU PRO TYR HIS PHE ILE MET GLN SEQRES 3 A 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR SER SEQRES 4 A 109 VAL TRP ALA SER ASN THR GLY ILE LEU GLY LYS LYS GLY SEQRES 5 A 109 CYS LYS ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 A 109 TYR ASP ALA GLU GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 A 109 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 A 109 ASP GLY ASN VAL VAL ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 A 109 THR GLY THR TYR LYS SEQRES 1 D 109 ARG ASN ILE LEU MET ASN ASP GLU GLY LEU TYR ALA GLY SEQRES 2 D 109 GLN SER LEU ASP VAL GLU PRO TYR HIS LEU ILE MET GLN SEQRES 3 D 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR ALA SEQRES 4 D 109 VAL TRP THR THR ASN THR ASP ILE PRO GLY LYS LYS GLY SEQRES 5 D 109 CYS LYS ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 D 109 TYR ASP ALA GLU GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 D 109 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 D 109 ASP GLY ASN VAL VAL ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 D 109 THR ASN THR TYR LYS SEQRES 1 P 109 ARG ASN LEU LEU THR ASN GLY GLU GLY LEU TYR ALA GLY SEQRES 2 P 109 GLN SER LEU ASP VAL GLU PRO TYR HIS PHE ILE MET GLN SEQRES 3 P 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR SER SEQRES 4 P 109 VAL TRP ALA SER ASN THR GLY ILE LEU GLY LYS LYS GLY SEQRES 5 P 109 CYS LYS ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 P 109 TYR ASP ALA GLU GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 P 109 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 P 109 ASP GLY ASN VAL VAL ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 P 109 THR GLY THR TYR LYS SEQRES 1 Q 109 ARG ASN ILE LEU MET ASN ASP GLU GLY LEU TYR ALA GLY SEQRES 2 Q 109 GLN SER LEU ASP VAL GLU PRO TYR HIS LEU ILE MET GLN SEQRES 3 Q 109 GLU ASP CYS ASN LEU VAL LEU TYR ASP HIS SER THR ALA SEQRES 4 Q 109 VAL TRP THR THR ASN THR ASP ILE PRO GLY LYS LYS GLY SEQRES 5 Q 109 CYS LYS ALA VAL LEU GLN SER ASP GLY ASN PHE VAL VAL SEQRES 6 Q 109 TYR ASP ALA GLU GLY ARG SER LEU TRP ALA SER HIS SER SEQRES 7 Q 109 VAL ARG GLY ASN GLY ASN TYR VAL LEU VAL LEU GLN GLU SEQRES 8 Q 109 ASP GLY ASN VAL VAL ILE TYR GLY SER ASP ILE TRP SER SEQRES 9 Q 109 THR ASN THR TYR LYS
HET MAN A 300 12 HET MAN A 301 12 HET MAN A 302 12 HET MAN A 303 12 HET MAN D 304 12 HET MAN D 305 12 HET MAN D 306 12 HET MAN P 307 12 HET MAN P 308 12 HET MAN P 309 12 HET MAN P 310 12 HET MAN Q 311 12 HET MAN Q 312 12 HET MAN Q 313 12
HETNAM MAN ALPHA-D-MANNOSE
FORMUL 5 MAN 14(C6 H12 O6) FORMUL 19 HOH *175(H2 O)
SHEET 1 A 4 LEU A 3 THR A 5 0 SHEET 2 A 4 VAL A 86 LEU A 89 -1 O LEU A 87 N LEU A 4 SHEET 3 A 4 VAL A 95 TYR A 98 -1 O VAL A 96 N VAL A 88 SHEET 4 A 4 ASP D 101 SER D 104 -1 O TRP D 103 N ILE A 97 SHEET 1 B 4 GLY A 9 TYR A 11 0 SHEET 2 B 4 LYS A 54 LEU A 57 -1 O ALA A 55 N LEU A 10 SHEET 3 B 4 PHE A 63 TYR A 66 -1 O TYR A 66 N LYS A 54 SHEET 4 B 4 SER A 72 ALA A 75 -1 O TRP A 74 N VAL A 65 SHEET 1 C 4 SER A 15 VAL A 18 0 SHEET 2 C 4 TYR A 21 MET A 25 -1 O PHE A 23 N LEU A 16 SHEET 3 C 4 LEU A 31 ASP A 35 -1 O TYR A 34 N HIS A 22 SHEET 4 C 4 THR A 38 ALA A 42 -1 O VAL A 40 N LEU A 33 SHEET 1 D 4 ASP A 101 SER A 104 0 SHEET 2 D 4 VAL D 95 GLY D 99 -1 O ILE D 97 N TRP A 103 SHEET 3 D 4 TYR D 85 LEU D 89 -1 N VAL D 86 O TYR D 98 SHEET 4 D 4 ILE D 3 MET D 5 -1 N LEU D 4 O LEU D 87 SHEET 1 E 4 GLY D 9 TYR D 11 0 SHEET 2 E 4 LYS D 54 LEU D 57 -1 O ALA D 55 N LEU D 10 SHEET 3 E 4 PHE D 63 TYR D 66 -1 O TYR D 66 N LYS D 54 SHEET 4 E 4 SER D 72 ALA D 75 -1 O LEU D 73 N VAL D 65 SHEET 1 F 4 SER D 15 VAL D 18 0 SHEET 2 F 4 TYR D 21 MET D 25 -1 O TYR D 21 N VAL D 18 SHEET 3 F 4 LEU D 31 ASP D 35 -1 O VAL D 32 N ILE D 24 SHEET 4 F 4 THR D 38 THR D 42 -1 O THR D 38 N ASP D 35 SHEET 1 G 4 LEU P 3 THR P 5 0 SHEET 2 G 4 TYR P 85 LEU P 89 -1 O LEU P 87 N LEU P 4 SHEET 3 G 4 VAL P 95 GLY P 99 -1 O TYR P 98 N VAL P 86 SHEET 4 G 4 ASP Q 101 SER Q 104 -1 O TRP Q 103 N ILE P 97 SHEET 1 H 4 GLY P 9 TYR P 11 0 SHEET 2 H 4 LYS P 54 LEU P 57 -1 O ALA P 55 N LEU P 10 SHEET 3 H 4 PHE P 63 TYR P 66 -1 O TYR P 66 N LYS P 54 SHEET 4 H 4 SER P 72 ALA P 75 -1 O TRP P 74 N VAL P 65 SHEET 1 I 4 SER P 15 VAL P 18 0 SHEET 2 I 4 TYR P 21 MET P 25 -1 O TYR P 21 N VAL P 18 SHEET 3 I 4 LEU P 31 ASP P 35 -1 O TYR P 34 N HIS P 22 SHEET 4 I 4 THR P 38 ALA P 42 -1 O THR P 38 N ASP P 35 SHEET 1 J 4 ASP P 101 SER P 104 0 SHEET 2 J 4 VAL Q 95 GLY Q 99 -1 O ILE Q 97 N TRP P 103 SHEET 3 J 4 TYR Q 85 LEU Q 89 -1 N VAL Q 88 O VAL Q 96 SHEET 4 J 4 ILE Q 3 MET Q 5 -1 N LEU Q 4 O LEU Q 87 SHEET 1 K 4 GLY Q 9 TYR Q 11 0 SHEET 2 K 4 LYS Q 54 LEU Q 57 -1 O ALA Q 55 N LEU Q 10 SHEET 3 K 4 PHE Q 63 TYR Q 66 -1 O TYR Q 66 N LYS Q 54 SHEET 4 K 4 SER Q 72 ALA Q 75 -1 O TRP Q 74 N VAL Q 65 SHEET 1 L 4 SER Q 15 VAL Q 18 0 SHEET 2 L 4 TYR Q 21 MET Q 25 -1 O TYR Q 21 N VAL Q 18 SHEET 3 L 4 LEU Q 31 ASP Q 35 -1 O TYR Q 34 N HIS Q 22 SHEET 4 L 4 THR Q 38 THR Q 42 -1 O THR Q 38 N ASP Q 35
SSBOND 1 CYS A 29 CYS A 53 1555 1555 2.03 SSBOND 2 CYS D 29 CYS D 53 1555 1555 2.02 SSBOND 3 CYS P 29 CYS P 53 1555 1555 2.03 SSBOND 4 CYS Q 29 CYS Q 53 1555 1555 2.02
CISPEP 1 GLU D 19 PRO D 20 0 -0.74
SITE 1 AC1 7 GLN A 90 ASP A 92 ASN A 94 TYR A 98 SITE 2 AC1 7 ASN D 84 ASP D 101 SER D 104 SITE 1 AC2 6 GLN A 58 ASP A 60 ASN A 62 TYR A 66 SITE 2 AC2 6 SER A 72 HIS A 77 SITE 1 AC3 6 GLN A 26 ASP A 28 ASN A 30 TYR A 34 SITE 2 AC3 6 HOH A 421 HOH D 563 SITE 1 AC4 8 TYR A 21 ASP A 35 THR A 38 SER A 39 SITE 2 AC4 8 VAL A 40 GLY A 93 THR D 107 LYS D 109 SITE 1 AC5 8 ASN A 84 ASP A 101 SER A 104 TYR A 108 SITE 2 AC5 8 GLN D 90 ASP D 92 ASN D 94 TYR D 98 SITE 1 AC6 6 GLN D 58 ASP D 60 ASN D 62 TYR D 66 SITE 2 AC6 6 SER D 72 HOH D 514 SITE 1 AC7 8 GLN D 26 ASP D 28 ASN D 30 TYR D 34 SITE 2 AC7 8 ASP D 46 HOH D 407 LYS P 50 ARG P 71 SITE 1 AC8 8 GLN P 90 ASP P 92 ASN P 94 TYR P 98 SITE 2 AC8 8 MET Q 5 ASN Q 84 ASP Q 101 HOH Q 417 SITE 1 AC9 4 GLN P 58 ASP P 60 ASN P 62 TYR P 66 SITE 1 BC1 8 GLN P 26 ASP P 28 ASN P 30 TYR P 34 SITE 2 BC1 8 SER P 39 ALA Q 68 GLU Q 69 HOH Q 544 SITE 1 BC2 10 TYR P 21 LEU P 33 ASP P 35 VAL P 40 SITE 2 BC2 10 GLY P 93 HOH P 438 ALA Q 12 GLY Q 13 SITE 3 BC2 10 THR Q 107 LYS Q 109 SITE 1 BC3 8 ASN P 84 ASP P 101 TYR P 108 GLN Q 90 SITE 2 BC3 8 ASP Q 92 ASN Q 94 TYR Q 98 HOH Q 486 SITE 1 BC4 6 GLN Q 58 ASP Q 60 ASN Q 62 TYR Q 66 SITE 2 BC4 6 SER Q 72 HOH Q 441 SITE 1 BC5 9 ILE A 47 LYS A 50 ARG A 71 GLN Q 26 SITE 2 BC5 9 ASP Q 28 ASN Q 30 TYR Q 34 ASP Q 46 SITE 3 BC5 9 HOH Q 449
CRYST1 201.831 43.516 78.736 90.00 112.26 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004955 0.000000 0.002028 0.00000
SCALE2 0.000000 0.022980 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013723 0.00000