10 20 30 40 50 60 70 80 1KG1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TOXIN 26-NOV-01 1KG1
TITLE NMR STRUCTURE OF THE NIP1 ELICITOR PROTEIN FROM TITLE 2 RHYNCHOSPORIUM SECALIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NECROSIS INDUCING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NIP1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHYNCHOSPORIUM SECALIS; SOURCE 3 ORGANISM_COMMON: LEAF BLOTCH OF BARLEY; SOURCE 4 ORGANISM_TAXID: 38038; SOURCE 5 GENE: NIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: AD494; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30
KEYWDS ANTIPARALEL BETA SHEETS, TOXIN
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR K.A.VAN'T SLOT,H.A.VAN DEN BURG,C.P.KLOKS,C.W.HILBERS, AUTHOR 2 W.KNOGGE,C.H.PAPAVOINE
REVDAT 3 24-FEB-09 1KG1 1 VERSN REVDAT 2 18-NOV-03 1KG1 1 JRNL REVDAT 1 11-NOV-03 1KG1 0
JRNL AUTH K.A.VAN'T SLOT,H.A.VAN DEN BURG,C.P.KLOKS, JRNL AUTH 2 C.W.HILBERS,W.KNOGGE,C.H.PAPAVOINE JRNL TITL SOLUTION STRUCTURE OF THE PLANT DISEASE JRNL TITL 2 RESISTANCE-TRIGGERING PROTEIN NIP1 FROM THE FUNGUS JRNL TITL 3 RHYNCHOSPORIUM SECALIS SHOWS A NOVEL BETA-SHEET JRNL TITL 4 FOLD. JRNL REF J.BIOL.CHEM. V. 278 45730 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12944393 JRNL DOI 10.1074/JBC.M308304200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BESED ON A TOTAL REMARK 3 OF 785 RESTRAINTS: 740 NOE RESTRAINTS AND 45, 40 TORSION ANGLE REMARK 3 RESTRAINTS AND 5 DISULFIDE BONDS
REMARK 4 REMARK 4 1KG1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-01. REMARK 100 THE RCSB ID CODE IS RCSB014918.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.0MM NIP1, 97% 15N REMARK 210 INCORPORATION; 2.0MM NIP1, REMARK 210 UNLABELED; 2.0MM NIP1, REMARK 210 UNLABELED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 HNHB, 2D NOESY, DQF-COSY, HMQC REMARK 210 -NOESY-HMQC, HMQC-NOESY-HMQC, REMARK 210 2D HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, NMRPIPE VERSION REMARK 210 1.8 REV 2001.030.21.27, XEASY REMARK 210 1.3.13 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DISULFIDE BOND PATTERN WAS DETERMINED INDEPENDENTLY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 5 109.95 -48.20 REMARK 500 1 ALA A 12 79.01 -150.77 REMARK 500 1 LEU A 13 -84.02 173.19 REMARK 500 1 LYS A 14 132.58 174.59 REMARK 500 1 LEU A 27 93.07 -67.12 REMARK 500 1 GLU A 46 125.68 -38.68 REMARK 500 2 CYS A 3 158.70 59.69 REMARK 500 2 TYR A 5 99.98 -38.84 REMARK 500 2 ALA A 12 81.10 -151.77 REMARK 500 2 LEU A 13 -94.11 176.34 REMARK 500 2 LYS A 14 121.97 -175.40 REMARK 500 2 LEU A 27 77.36 -64.81 REMARK 500 2 PRO A 29 -168.09 -75.05 REMARK 500 2 LYS A 36 29.19 -148.42 REMARK 500 2 GLU A 46 151.05 59.64 REMARK 500 2 GLN A 59 125.18 -35.14 REMARK 500 3 CYS A 3 137.55 86.76 REMARK 500 3 TYR A 5 98.10 -36.08 REMARK 500 3 ALA A 12 74.28 -150.54 REMARK 500 3 LEU A 13 -92.72 177.56 REMARK 500 3 LYS A 14 117.17 179.50 REMARK 500 3 ALA A 15 125.66 -36.46 REMARK 500 3 PRO A 29 -169.53 -75.10 REMARK 500 3 GLN A 52 -169.39 -119.58 REMARK 500 4 CYS A 3 161.40 -43.84 REMARK 500 4 ARG A 4 79.55 -101.77 REMARK 500 4 ALA A 12 72.85 -150.78 REMARK 500 4 LEU A 13 -89.58 175.02 REMARK 500 4 LYS A 14 133.07 177.70 REMARK 500 4 ALA A 15 129.68 -39.32 REMARK 500 4 LEU A 27 89.85 -60.46 REMARK 500 4 LYS A 36 27.89 -145.01 REMARK 500 4 ASN A 49 87.96 -150.32 REMARK 500 4 GLN A 59 126.83 -37.62 REMARK 500 5 CYS A 3 153.32 178.82 REMARK 500 5 ALA A 12 72.32 -152.90 REMARK 500 5 LEU A 13 -99.53 -178.86 REMARK 500 5 LEU A 27 87.58 -60.84 REMARK 500 5 PRO A 29 -169.15 -75.02 REMARK 500 5 GLU A 46 139.59 -36.63 REMARK 500 5 GLN A 59 140.56 -35.78 REMARK 500 6 CYS A 3 157.83 76.72 REMARK 500 6 ALA A 12 44.72 -89.74 REMARK 500 6 LEU A 13 54.28 31.90 REMARK 500 6 LYS A 14 78.90 -152.12 REMARK 500 6 LEU A 27 90.54 -60.28 REMARK 500 6 SER A 43 116.01 -160.50 REMARK 500 6 ASN A 49 79.85 -113.40 REMARK 500 6 GLN A 59 143.62 -38.69 REMARK 500 7 ALA A 12 76.74 -152.73 REMARK 500 7 LEU A 13 -95.23 177.60 REMARK 500 7 LEU A 27 79.27 -62.71 REMARK 500 7 LYS A 36 29.72 -148.47 REMARK 500 7 SER A 43 103.31 -160.62 REMARK 500 7 ASN A 49 62.95 -114.75 REMARK 500 7 GLN A 59 124.08 -35.48 REMARK 500 8 TYR A 5 105.34 -36.49 REMARK 500 8 ASP A 10 30.59 -96.03 REMARK 500 8 ALA A 12 -135.07 -122.28 REMARK 500 8 GLU A 46 152.64 59.16 REMARK 500 8 GLN A 59 141.68 -37.24 REMARK 500 9 TYR A 5 97.08 -36.27 REMARK 500 9 ALA A 12 47.49 -150.00 REMARK 500 9 LEU A 13 -83.04 157.04 REMARK 500 9 LEU A 27 82.17 -61.94 REMARK 500 9 ASN A 49 43.90 -89.54 REMARK 500 9 PHE A 51 150.24 -43.31 REMARK 500 9 GLN A 59 126.61 -36.72 REMARK 500 10 ARG A 2 163.75 167.51 REMARK 500 10 ALA A 12 68.66 -152.71 REMARK 500 10 LEU A 13 -96.53 -179.97 REMARK 500 10 LEU A 27 92.06 -65.54 REMARK 500 10 LYS A 36 24.28 -140.59 REMARK 500 10 GLN A 59 132.26 -37.18 REMARK 500 11 ARG A 2 159.97 -39.48 REMARK 500 11 TYR A 5 107.14 -47.77 REMARK 500 11 ALA A 12 -131.48 -117.08 REMARK 500 11 PRO A 29 -168.28 -74.94 REMARK 500 11 SER A 43 95.56 -160.32 REMARK 500 11 GLU A 46 109.22 52.29 REMARK 500 11 ASN A 49 73.55 -150.85 REMARK 500 11 GLN A 52 75.47 -150.52 REMARK 500 11 CYS A 53 151.48 -47.60 REMARK 500 11 GLN A 59 142.23 -34.84 REMARK 500 12 ARG A 2 158.96 58.13 REMARK 500 12 ARG A 4 -144.15 -88.46 REMARK 500 12 TYR A 5 114.33 -177.68 REMARK 500 12 ALA A 12 44.35 -141.54 REMARK 500 12 LEU A 13 -53.91 79.57 REMARK 500 12 LYS A 14 144.00 -38.33 REMARK 500 12 LEU A 27 89.37 -65.90 REMARK 500 12 PRO A 29 -169.57 -75.07 REMARK 500 12 SER A 43 88.99 -155.00 REMARK 500 12 GLN A 59 126.05 -36.75 REMARK 500 13 CYS A 3 165.12 61.66 REMARK 500 13 ARG A 4 61.72 -106.30 REMARK 500 13 TYR A 5 125.88 -35.81 REMARK 500 13 ALA A 12 83.59 -150.95 REMARK 500 13 LEU A 13 -88.34 165.69 REMARK 500 13 LYS A 14 133.91 179.10 REMARK 500 13 SER A 23 -77.85 -78.82 REMARK 500 13 GLU A 24 153.10 -35.96 REMARK 500 14 ARG A 4 -146.23 -89.45 REMARK 500 14 TYR A 5 106.06 -178.15 REMARK 500 14 ALA A 12 70.28 -150.60 REMARK 500 14 LEU A 13 -93.38 177.45 REMARK 500 14 LYS A 14 132.88 -178.06 REMARK 500 14 LEU A 27 76.66 -68.90 REMARK 500 14 PRO A 29 -169.46 -75.00 REMARK 500 14 PHE A 51 151.37 -36.62 REMARK 500 14 GLN A 59 140.19 -36.79 REMARK 500 15 ARG A 2 158.40 57.70 REMARK 500 15 CYS A 3 168.57 164.13 REMARK 500 15 ASP A 10 42.32 -100.14 REMARK 500 15 ALA A 12 -133.96 -123.85 REMARK 500 15 LYS A 14 101.04 -50.30 REMARK 500 15 LEU A 27 84.37 -58.86 REMARK 500 15 SER A 43 99.53 -161.51 REMARK 500 15 CYS A 53 153.97 -45.58 REMARK 500 15 GLN A 59 127.69 -39.32 REMARK 500 16 CYS A 3 135.84 65.84 REMARK 500 16 ALA A 12 88.37 -151.73 REMARK 500 16 LEU A 13 -89.13 169.01 REMARK 500 16 LYS A 14 123.90 179.60 REMARK 500 16 ALA A 15 119.21 -37.04 REMARK 500 16 SER A 23 -78.06 -79.55 REMARK 500 16 GLU A 24 151.23 -38.36 REMARK 500 16 LEU A 27 91.13 -69.10 REMARK 500 16 PRO A 29 -168.61 -74.88 REMARK 500 16 ASN A 49 55.90 -146.44 REMARK 500 16 GLN A 59 127.27 -37.59 REMARK 500 17 CYS A 3 157.98 80.32 REMARK 500 17 ALA A 12 71.17 -150.60 REMARK 500 17 LEU A 13 -91.04 173.35 REMARK 500 17 GLU A 24 142.10 -33.77 REMARK 500 17 GLU A 46 133.65 -37.35 REMARK 500 17 GLN A 59 126.50 -37.12 REMARK 500 18 ARG A 4 66.54 -101.32 REMARK 500 18 TYR A 5 118.53 -36.91 REMARK 500 18 LEU A 13 -24.67 153.85 REMARK 500 18 LYS A 14 135.40 96.84 REMARK 500 18 ALA A 15 117.66 -37.56 REMARK 500 18 GLU A 46 154.05 -38.42 REMARK 500 18 ASN A 49 -154.89 -142.30 REMARK 500 18 GLN A 59 137.43 -36.95 REMARK 500 19 CYS A 3 150.75 173.94 REMARK 500 19 ALA A 12 60.87 -151.98 REMARK 500 19 LEU A 13 -100.05 179.92 REMARK 500 19 LEU A 27 75.31 -64.93 REMARK 500 19 PRO A 29 -169.52 -75.01 REMARK 500 19 SER A 43 115.36 -160.71 REMARK 500 20 ARG A 4 77.78 -103.86 REMARK 500 20 ALA A 12 -126.87 -127.49 REMARK 500 20 LYS A 14 176.63 177.60 REMARK 500 20 LEU A 27 88.47 -63.49 REMARK 500 20 PRO A 29 -167.80 -75.03 REMARK 500 20 SER A 43 92.88 -160.16 REMARK 500 20 GLU A 46 151.11 59.60 REMARK 500 20 ASN A 49 -154.22 -135.60 REMARK 500 20 GLN A 59 136.01 -35.39 REMARK 500 21 CYS A 3 147.79 162.85 REMARK 500 21 ARG A 4 69.67 -102.42 REMARK 500 21 ALA A 12 -129.87 -103.13 REMARK 500 21 LYS A 14 -169.37 172.03 REMARK 500 21 LYS A 36 24.43 -140.60 REMARK 500 21 GLN A 59 130.60 -37.56 REMARK 500 22 CYS A 3 158.92 63.22 REMARK 500 22 ALA A 12 45.92 -145.16 REMARK 500 22 LEU A 13 -54.48 71.09 REMARK 500 22 LYS A 14 105.39 -38.46 REMARK 500 22 LEU A 27 93.20 -66.91 REMARK 500 22 PRO A 29 -169.60 -75.06 REMARK 500 22 LYS A 36 26.07 -145.20 REMARK 500 22 SER A 43 109.77 -160.13 REMARK 500 22 ASN A 49 45.43 -90.24 REMARK 500 22 GLN A 59 131.42 -37.34 REMARK 500 23 CYS A 3 157.78 -41.54 REMARK 500 23 ALA A 12 67.61 -152.85 REMARK 500 23 LEU A 13 -96.39 -178.90 REMARK 500 23 LEU A 27 93.65 -63.34 REMARK 500 23 PRO A 29 -168.50 -74.95 REMARK 500 23 LYS A 36 24.09 -141.09 REMARK 500 23 ASN A 49 39.38 -91.18 REMARK 500 23 GLN A 52 -157.67 -141.83 REMARK 500 23 CYS A 53 171.85 179.77 REMARK 500 23 GLN A 59 137.45 -33.70 REMARK 500 24 ARG A 2 169.17 -47.76 REMARK 500 24 CYS A 3 158.39 -41.58 REMARK 500 24 TYR A 5 122.27 -36.26 REMARK 500 24 ALA A 12 84.30 -151.39 REMARK 500 24 LEU A 13 -91.75 173.33 REMARK 500 24 LYS A 14 122.56 -177.10 REMARK 500 24 ALA A 15 117.76 -39.09 REMARK 500 24 PRO A 29 -169.70 -75.04 REMARK 500 24 LYS A 36 27.91 -146.27 REMARK 500 24 GLN A 59 128.71 -36.83 REMARK 500 25 CYS A 3 154.33 68.82 REMARK 500 25 ALA A 12 -131.54 -119.39 REMARK 500 25 LEU A 27 73.99 -65.78 REMARK 500 25 SER A 43 115.86 -160.32 REMARK 500 25 GLU A 46 10.50 59.84 REMARK 500 25 GLN A 59 141.58 -36.24 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5199 RELATED DB: BMRB REMARK 900 5199 CONTAINS NIP1 WITH CHEMICAL SHIFT VALUES AND TORSION REMARK 900 ANGLES.
DBREF 1KG1 A 1 60 UNP Q02039 Q02039_RHYSE 23 82
SEQRES 1 A 60 ASP ARG CYS ARG TYR THR LEU CYS CYS ASP GLY ALA LEU SEQRES 2 A 60 LYS ALA VAL SER ALA CYS LEU HIS GLU SER GLU SER CYS SEQRES 3 A 60 LEU VAL PRO GLY ASP CYS CYS ARG GLY LYS SER ARG LEU SEQRES 4 A 60 THR LEU CYS SER TYR GLY GLU GLY GLY ASN GLY PHE GLN SEQRES 5 A 60 CYS PRO THR GLY TYR ARG GLN CYS
SHEET 1 A 2 ARG A 4 CYS A 8 0 SHEET 2 A 2 VAL A 16 LEU A 20 -1 O ALA A 18 N THR A 6 SHEET 1 B 3 SER A 37 LEU A 41 0 SHEET 2 B 3 GLY A 30 ARG A 34 -1 N ARG A 34 O SER A 37 SHEET 3 B 3 ARG A 58 GLN A 59 -1 O ARG A 58 N CYS A 33
SSBOND 1 CYS A 3 CYS A 19 1555 1555 1.98 SSBOND 2 CYS A 8 CYS A 26 1555 1555 1.96 SSBOND 3 CYS A 9 CYS A 42 1555 1555 1.96 SSBOND 4 CYS A 32 CYS A 53 1555 1555 2.11 SSBOND 5 CYS A 33 CYS A 60 1555 1555 1.98
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000