10 20 30 40 50 60 70 80 1KFZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 24-NOV-01 1KFZ
TITLE SOLUTION STRUCTURE OF C-TERMINAL SEM-5 SH3 DOMAIN (ENSEMBLE TITLE 2 OF 16 STRUCTURES)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX MUSCLE ABNORMAL PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL SH3 DOMAIN (RESIDUES 155-214); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SEM-5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B
KEYWDS ALL BETA PROTEIN, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR J.C.FERREON,D.E.VOLK,B.A.LUXON,D.GORENSTEIN,V.J.HILSER
REVDAT 3 24-FEB-09 1KFZ 1 VERSN REVDAT 2 04-NOV-03 1KFZ 3 ATOM REVDAT 1 20-MAY-03 1KFZ 0
JRNL AUTH J.C.FERREON,D.E.VOLK,B.A.LUXON,D.GORENSTEIN, JRNL AUTH 2 V.J.HILSER JRNL TITL SOLUTION STRUCTURE, DYNAMICS AND THERMODYNAMICS OF JRNL TITL 2 THE NATIVE STATE ENSEMBLE OF SEM-5 C-TERMINAL SH3 JRNL TITL 3 DOMAIN JRNL REF BIOCHEMISTRY V. 42 5582 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12741814 JRNL DOI 10.1021/BI030005J
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER, ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KFZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014916.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.8 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SEM-5 SH3 DOMAIN, BOTH REMARK 210 15N, AND 15N,13C LABELED, 50 REMARK 210 MM SODIUM ACETATE BUFFER, 10 REMARK 210 MM CACL2, 100 MM NACL, PH 4.8, REMARK 210 90%H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY-HSQC, 3D 13C- REMARK 210 NOESY-HSQC, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX V.98, VNMR 1.0, CNS 1.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 163 140.20 -170.12 REMARK 500 1 LYS A 176 -168.95 -115.65 REMARK 500 1 ASN A 185 -171.73 -175.16 REMARK 500 1 LYS A 186 51.84 -151.39 REMARK 500 1 ASN A 198 -67.70 170.94 REMARK 500 1 TYR A 211 -62.59 -106.26 REMARK 500 1 SER A 213 178.17 -54.96 REMARK 500 2 MET A 154 -77.51 -133.48 REMARK 500 2 PHE A 163 139.49 -170.16 REMARK 500 2 ASN A 166 78.43 -109.92 REMARK 500 2 LYS A 176 -168.19 -116.15 REMARK 500 2 VAL A 180 93.46 -69.59 REMARK 500 2 ASN A 197 64.86 66.03 REMARK 500 2 ASN A 198 11.81 82.69 REMARK 500 2 TYR A 211 -68.59 -101.45 REMARK 500 3 MET A 154 -80.59 62.60 REMARK 500 3 VAL A 180 96.07 -69.68 REMARK 500 3 ASN A 197 -62.60 76.23 REMARK 500 3 ASN A 198 29.62 -164.61 REMARK 500 3 PRO A 204 108.67 -59.82 REMARK 500 3 TYR A 211 -65.67 -98.88 REMARK 500 3 ASN A 212 74.47 61.77 REMARK 500 4 MET A 154 117.98 62.24 REMARK 500 4 PHE A 163 140.24 -170.28 REMARK 500 4 LEU A 196 59.53 -116.96 REMARK 500 4 ASN A 197 65.98 67.93 REMARK 500 4 ASN A 198 10.85 83.30 REMARK 500 4 ALA A 209 114.65 -161.49 REMARK 500 4 TYR A 211 -68.71 -99.94 REMARK 500 4 ASN A 212 74.58 61.75 REMARK 500 5 MET A 154 -77.26 -85.38 REMARK 500 5 ASN A 166 78.59 -109.67 REMARK 500 5 VAL A 180 94.70 -69.70 REMARK 500 5 ASN A 185 174.65 179.75 REMARK 500 5 ASN A 197 -60.03 76.59 REMARK 500 5 ASN A 198 -40.38 -143.08 REMARK 500 5 PHE A 203 149.45 -170.09 REMARK 500 5 ALA A 209 111.98 -163.24 REMARK 500 5 TYR A 211 -66.15 -93.25 REMARK 500 5 SER A 213 80.61 -64.77 REMARK 500 6 PHE A 163 -164.23 -170.05 REMARK 500 6 ASN A 197 -59.87 76.61 REMARK 500 6 ASN A 198 -38.76 -150.29 REMARK 500 6 TYR A 211 -68.82 -96.35 REMARK 500 6 ASN A 212 74.61 61.73 REMARK 500 7 GLU A 155 112.84 -166.08 REMARK 500 7 PHE A 163 140.16 -170.25 REMARK 500 7 LEU A 196 86.04 -69.99 REMARK 500 7 ASN A 197 -59.73 77.68 REMARK 500 7 ASN A 198 -39.82 -146.33 REMARK 500 7 ALA A 209 125.38 -177.74 REMARK 500 7 TYR A 211 -83.82 -131.00 REMARK 500 7 ASN A 212 104.19 176.30 REMARK 500 8 MET A 154 -177.60 -60.32 REMARK 500 8 PHE A 163 -169.96 -170.14 REMARK 500 8 VAL A 180 92.46 -69.42 REMARK 500 8 THR A 182 99.74 -69.97 REMARK 500 8 LEU A 196 101.60 -160.31 REMARK 500 8 ASN A 197 31.12 78.41 REMARK 500 8 ASN A 198 5.44 82.01 REMARK 500 8 PRO A 204 108.07 -58.57 REMARK 500 8 ALA A 209 111.79 -160.39 REMARK 500 8 TYR A 211 -66.34 -92.86 REMARK 500 9 ASN A 166 79.81 -112.42 REMARK 500 9 LYS A 176 -167.15 -117.71 REMARK 500 9 LEU A 196 -157.40 -92.66 REMARK 500 9 ASN A 198 35.93 -178.41 REMARK 500 9 TYR A 211 -67.88 -95.39 REMARK 500 9 SER A 213 176.31 58.72 REMARK 500 10 MET A 154 118.27 62.26 REMARK 500 10 GLU A 155 108.71 -161.94 REMARK 500 10 PHE A 163 139.37 -170.21 REMARK 500 10 ASN A 166 78.04 -109.54 REMARK 500 10 LYS A 176 -166.78 -109.54 REMARK 500 10 LEU A 196 72.10 -112.66 REMARK 500 10 ASN A 197 -28.13 86.86 REMARK 500 10 ASN A 198 -36.94 -177.55 REMARK 500 10 ALA A 209 111.53 -161.18 REMARK 500 10 TYR A 211 -63.51 -103.52 REMARK 500 11 MET A 154 -77.35 -147.58 REMARK 500 11 LYS A 176 -167.56 -117.99 REMARK 500 11 ASN A 197 -62.02 73.78 REMARK 500 11 ASN A 198 29.46 -146.06 REMARK 500 11 TYR A 211 -78.92 -93.76 REMARK 500 11 ASN A 212 35.43 178.91 REMARK 500 11 SER A 213 -74.12 64.94 REMARK 500 12 LYS A 176 -169.86 -128.52 REMARK 500 12 ASN A 197 -63.13 72.61 REMARK 500 12 ASN A 198 28.54 -143.10 REMARK 500 12 ALA A 209 119.54 -160.55 REMARK 500 12 TYR A 211 -70.27 -101.05 REMARK 500 12 SER A 213 76.68 49.95 REMARK 500 13 GLU A 155 133.90 -170.25 REMARK 500 13 ASN A 166 76.21 -114.49 REMARK 500 13 LYS A 176 -169.37 -110.88 REMARK 500 13 LYS A 186 54.37 -107.64 REMARK 500 13 ASN A 197 -23.20 86.09 REMARK 500 13 ASN A 198 -36.37 177.54 REMARK 500 13 PRO A 210 109.84 -46.14 REMARK 500 13 ASN A 212 74.58 61.66 REMARK 500 13 SER A 213 -170.04 -58.37 REMARK 500 14 PHE A 163 139.68 -170.16 REMARK 500 14 LYS A 176 -169.74 -109.32 REMARK 500 14 VAL A 180 97.90 -69.77 REMARK 500 14 ASN A 197 -55.14 79.65 REMARK 500 14 ASN A 198 -36.33 -159.62 REMARK 500 14 ALA A 209 114.57 -161.10 REMARK 500 14 TYR A 211 -68.84 -99.21 REMARK 500 14 ASN A 212 81.60 61.91 REMARK 500 14 SER A 213 -77.52 -57.62 REMARK 500 15 MET A 154 -77.40 -64.72 REMARK 500 15 PHE A 163 140.26 -170.23 REMARK 500 15 ASN A 166 79.20 -110.87 REMARK 500 15 ASN A 197 -59.03 77.39 REMARK 500 15 ASN A 198 -38.37 -152.09 REMARK 500 15 PRO A 204 109.82 -57.45 REMARK 500 15 TYR A 211 -68.24 -98.41 REMARK 500 15 ASN A 212 74.42 61.75 REMARK 500 15 SER A 213 -175.82 -58.25 REMARK 500 16 ASN A 166 78.90 -110.59 REMARK 500 16 LYS A 176 -168.06 -103.22 REMARK 500 16 VAL A 180 99.40 -69.71 REMARK 500 16 ASN A 197 -55.71 79.36 REMARK 500 16 ASN A 198 -36.94 -159.25 REMARK 500 16 ALA A 209 110.02 -161.21 REMARK 500 16 TYR A 211 -66.41 -93.54 REMARK 500 16 ASN A 212 74.56 61.70 REMARK 500 16 SER A 213 174.47 -58.27 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K76 RELATED DB: PDB REMARK 900 1K76 IS THE SOLUTION STRUCTURE OF C-TERMINAL SEM-5 SH3 REMARK 900 DOMAIN (MINIMIZED AVERAGE STRUCTURE).
DBREF 1KFZ A 155 214 UNP P29355 SEM5_CAEEL 155 214
SEQADV 1KFZ HIS A 153 UNP P29355 CLONING ARTIFACT SEQADV 1KFZ MET A 154 UNP P29355 CLONING ARTIFACT SEQADV 1KFZ ALA A 209 UNP P29355 CYS 209 ENGINEERED
SEQRES 1 A 62 HIS MET GLU THR LYS PHE VAL GLN ALA LEU PHE ASP PHE SEQRES 2 A 62 ASN PRO GLN GLU SER GLY GLU LEU ALA PHE LYS ARG GLY SEQRES 3 A 62 ASP VAL ILE THR LEU ILE ASN LYS ASP ASP PRO ASN TRP SEQRES 4 A 62 TRP GLU GLY GLN LEU ASN ASN ARG ARG GLY ILE PHE PRO SEQRES 5 A 62 SER ASN TYR VAL ALA PRO TYR ASN SER ASN
SHEET 1 A 5 ARG A 199 PRO A 204 0 SHEET 2 A 5 TRP A 191 LEU A 196 -1 N TRP A 192 O PHE A 203 SHEET 3 A 5 VAL A 180 ASN A 185 -1 N THR A 182 O GLN A 195 SHEET 4 A 5 LYS A 157 ALA A 161 -1 N VAL A 159 O ILE A 181 SHEET 5 A 5 VAL A 208 PRO A 210 -1 O ALA A 209 N GLN A 160
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000