10 20 30 40 50 60 70 80 1KET - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 17-NOV-01 1KET
TITLE THE CRYSTAL STRUCTURE OF DTDP-D-GLUCOSE 4,6-DEHYDRATASE TITLE 2 (RMLB) FROM STREPTOCOCCUS SUIS WITH THYMIDINE DIPHOSPHATE TITLE 3 BOUND
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-D-GLUCOSE 4,6-DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RMLB; COMPND 5 EC: 4.2.1.46; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 1307; SOURCE 4 VARIANT: SEROTYPE 2; SOURCE 5 GENE: RMLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21
KEYWDS ROSSMANN FOLD, LYASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.T.M.ALLARD,K.BEIS,M.-F.GIRAUD,A.D.HEGEMAN,J.W.GROSS, AUTHOR 2 C.WHITFIELD,M.GRANINGER,P.MESSNER,A.G.ALLEN,J.H.NAISMITH
REVDAT 3 24-FEB-09 1KET 1 VERSN REVDAT 2 01-APR-03 1KET 1 JRNL REVDAT 1 25-JAN-02 1KET 0
JRNL AUTH S.T.ALLARD,K.BEIS,M.F.GIRAUD,A.D.HEGEMAN,J.W.GROSS, JRNL AUTH 2 R.C.WILMOUTH,C.WHITFIELD,M.GRANINGER,P.MESSNER, JRNL AUTH 3 A.G.ALLEN,D.J.MASKELL,J.H.NAISMITH JRNL TITL TOWARD A STRUCTURAL UNDERSTANDING OF THE JRNL TITL 2 DEHYDRATASE MECHANISM. JRNL REF STRUCTURE V. 10 81 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 11796113 JRNL DOI 10.1016/S0969-2126(01)00694-3
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 500.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 104051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 10280 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2567 REMARK 3 BIN FREE R VALUE : 0.2784 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 970 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.25 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.41 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.78 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1KET COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-01. REMARK 100 THE RCSB ID CODE IS RCSB014877.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.870 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : 0.25100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1G1A REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% W/V PEG 4000, 0.1M CITRIC ACID REMARK 280 PH 5.4, 0.3M AMMONIUM SULPHATE AND 3% 1,6-HEXANEDIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP AT 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.17350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.32150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.49700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.32150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.17350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.49700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 LYS B 348
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 -71.10 -63.04 REMARK 500 THR A 40 -166.99 -79.03 REMARK 500 ASP A 94 98.02 -160.97 REMARK 500 PHE A 103 -60.25 -95.68 REMARK 500 ASN A 156 57.22 -166.52 REMARK 500 ILE A 198 3.12 -67.85 REMARK 500 HIS A 287 125.90 -38.87 REMARK 500 LEU A 289 -77.14 -67.73 REMARK 500 PHE A 308 69.40 -103.66 REMARK 500 PHE B 15 -71.45 -62.08 REMARK 500 THR B 40 -166.58 -75.43 REMARK 500 ALA B 84 162.99 178.32 REMARK 500 PHE B 103 -61.13 -95.50 REMARK 500 ASN B 156 57.91 -164.82 REMARK 500 ILE B 198 2.05 -67.68 REMARK 500 PHE B 201 -74.99 -37.56 REMARK 500 HIS B 287 128.72 -36.43 REMARK 500 LEU B 289 -75.25 -72.52 REMARK 500 PHE B 308 75.65 -102.02 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 2573 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD B 2574 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1400 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 1500
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KEP RELATED DB: PDB REMARK 900 RMLB FROM STREPTOCOCCUS SUIS WITH DTDP-XYLOSE BOUND REMARK 900 RELATED ID: 1KER RELATED DB: PDB REMARK 900 RMLB FROM STREPTOCOCCUS SUIS WITH DTDP-D-GLUCOSE BOUND REMARK 900 RELATED ID: 1KEU RELATED DB: PDB REMARK 900 RMLB FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM WITH DTDP REMARK 900 -D-GLUCOSE BOUND REMARK 900 RELATED ID: 1KEW RELATED DB: PDB REMARK 900 RMLB FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM WITH NAD+ REMARK 900 BOUND REMARK 900 RELATED ID: 1G1A RELATED DB: PDB REMARK 900 RMLB FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM WITH NAD+ REMARK 900 BOUND
DBREF 1KET A 5 344 UNP P95780 RMLB_STRMU 5 344 DBREF 1KET B 5 344 UNP P95780 RMLB_STRMU 5 344
SEQRES 1 A 348 MET SER GLN PHE LYS ASN ILE ILE VAL THR GLY GLY ALA SEQRES 2 A 348 GLY PHE ILE GLY SER ASN PHE VAL HIS TYR VAL TYR ASN SEQRES 3 A 348 ASN HIS PRO ASP VAL HIS VAL THR VAL LEU ASP LYS LEU SEQRES 4 A 348 THR TYR ALA GLY ASN LYS ALA ASN LEU GLU ALA ILE LEU SEQRES 5 A 348 GLY ASP ARG VAL GLU LEU VAL VAL GLY ASP ILE ALA ASP SEQRES 6 A 348 ALA GLU LEU VAL ASP LYS LEU ALA ALA LYS ALA ASP ALA SEQRES 7 A 348 ILE VAL HIS TYR ALA ALA GLU SER HIS ASN ASP ASN SER SEQRES 8 A 348 LEU ASN ASP PRO SER PRO PHE ILE HIS THR ASN PHE ILE SEQRES 9 A 348 GLY THR TYR THR LEU LEU GLU ALA ALA ARG LYS TYR ASP SEQRES 10 A 348 ILE ARG PHE HIS HIS VAL SER THR ASP GLU VAL TYR GLY SEQRES 11 A 348 ASP LEU PRO LEU ARG GLU ASP LEU PRO GLY HIS GLY GLU SEQRES 12 A 348 GLY PRO GLY GLU LYS PHE THR ALA GLU THR ASN TYR ASN SEQRES 13 A 348 PRO SER SER PRO TYR SER SER THR LYS ALA ALA SER ASP SEQRES 14 A 348 LEU ILE VAL LYS ALA TRP VAL ARG SER PHE GLY VAL LYS SEQRES 15 A 348 ALA THR ILE SER ASN CYS SER ASN ASN TYR GLY PRO TYR SEQRES 16 A 348 GLN HIS ILE GLU LYS PHE ILE PRO ARG GLN ILE THR ASN SEQRES 17 A 348 ILE LEU ALA GLY ILE LYS PRO LYS LEU TYR GLY GLU GLY SEQRES 18 A 348 LYS ASN VAL ARG ASP TRP ILE HIS THR ASN ASP HIS SER SEQRES 19 A 348 THR GLY VAL TRP ALA ILE LEU THR LYS GLY ARG MET GLY SEQRES 20 A 348 GLU THR TYR LEU ILE GLY ALA ASP GLY GLU LYS ASN ASN SEQRES 21 A 348 LYS GLU VAL LEU GLU LEU ILE LEU GLU LYS MET GLY GLN SEQRES 22 A 348 PRO LYS ASP ALA TYR ASP HIS VAL THR ASP ARG ALA GLY SEQRES 23 A 348 HIS ASP LEU ARG TYR ALA ILE ASP ALA SER LYS LEU ARG SEQRES 24 A 348 ASP GLU LEU GLY TRP THR PRO GLN PHE THR ASP PHE SER SEQRES 25 A 348 GLU GLY LEU GLU GLU THR ILE GLN TRP TYR THR ASP ASN SEQRES 26 A 348 GLN ASP TRP TRP LYS ALA GLU LYS GLU ALA VAL GLU ALA SEQRES 27 A 348 ASN TYR ALA LYS THR GLN GLU VAL ILE LYS SEQRES 1 B 348 MET SER GLN PHE LYS ASN ILE ILE VAL THR GLY GLY ALA SEQRES 2 B 348 GLY PHE ILE GLY SER ASN PHE VAL HIS TYR VAL TYR ASN SEQRES 3 B 348 ASN HIS PRO ASP VAL HIS VAL THR VAL LEU ASP LYS LEU SEQRES 4 B 348 THR TYR ALA GLY ASN LYS ALA ASN LEU GLU ALA ILE LEU SEQRES 5 B 348 GLY ASP ARG VAL GLU LEU VAL VAL GLY ASP ILE ALA ASP SEQRES 6 B 348 ALA GLU LEU VAL ASP LYS LEU ALA ALA LYS ALA ASP ALA SEQRES 7 B 348 ILE VAL HIS TYR ALA ALA GLU SER HIS ASN ASP ASN SER SEQRES 8 B 348 LEU ASN ASP PRO SER PRO PHE ILE HIS THR ASN PHE ILE SEQRES 9 B 348 GLY THR TYR THR LEU LEU GLU ALA ALA ARG LYS TYR ASP SEQRES 10 B 348 ILE ARG PHE HIS HIS VAL SER THR ASP GLU VAL TYR GLY SEQRES 11 B 348 ASP LEU PRO LEU ARG GLU ASP LEU PRO GLY HIS GLY GLU SEQRES 12 B 348 GLY PRO GLY GLU LYS PHE THR ALA GLU THR ASN TYR ASN SEQRES 13 B 348 PRO SER SER PRO TYR SER SER THR LYS ALA ALA SER ASP SEQRES 14 B 348 LEU ILE VAL LYS ALA TRP VAL ARG SER PHE GLY VAL LYS SEQRES 15 B 348 ALA THR ILE SER ASN CYS SER ASN ASN TYR GLY PRO TYR SEQRES 16 B 348 GLN HIS ILE GLU LYS PHE ILE PRO ARG GLN ILE THR ASN SEQRES 17 B 348 ILE LEU ALA GLY ILE LYS PRO LYS LEU TYR GLY GLU GLY SEQRES 18 B 348 LYS ASN VAL ARG ASP TRP ILE HIS THR ASN ASP HIS SER SEQRES 19 B 348 THR GLY VAL TRP ALA ILE LEU THR LYS GLY ARG MET GLY SEQRES 20 B 348 GLU THR TYR LEU ILE GLY ALA ASP GLY GLU LYS ASN ASN SEQRES 21 B 348 LYS GLU VAL LEU GLU LEU ILE LEU GLU LYS MET GLY GLN SEQRES 22 B 348 PRO LYS ASP ALA TYR ASP HIS VAL THR ASP ARG ALA GLY SEQRES 23 B 348 HIS ASP LEU ARG TYR ALA ILE ASP ALA SER LYS LEU ARG SEQRES 24 B 348 ASP GLU LEU GLY TRP THR PRO GLN PHE THR ASP PHE SER SEQRES 25 B 348 GLU GLY LEU GLU GLU THR ILE GLN TRP TYR THR ASP ASN SEQRES 26 B 348 GLN ASP TRP TRP LYS ALA GLU LYS GLU ALA VAL GLU ALA SEQRES 27 B 348 ASN TYR ALA LYS THR GLN GLU VAL ILE LYS
HET TYD A2573 25 HET TYD B2574 25 HET NAD A1400 44 HET NAD B1500 44
HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 3 TYD 2(C10 H16 N2 O11 P2) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *585(H2 O)
HELIX 1 1 GLY A 14 HIS A 28 1 15 HELIX 2 2 ASN A 44 LEU A 52 5 9 HELIX 3 3 ASP A 65 ALA A 74 1 10 HELIX 4 4 HIS A 87 ASP A 94 1 8 HELIX 5 5 PRO A 95 PHE A 103 1 9 HELIX 6 6 PHE A 103 ASP A 117 1 15 HELIX 7 7 GLU A 127 GLY A 130 5 4 HELIX 8 8 LEU A 134 LEU A 138 5 5 HELIX 9 9 SER A 159 GLY A 180 1 22 HELIX 10 10 LYS A 200 ALA A 211 1 12 HELIX 11 11 THR A 230 GLY A 244 1 15 HELIX 12 12 ASN A 260 MET A 271 1 12 HELIX 13 13 ALA A 295 GLY A 303 1 9 HELIX 14 14 ASP A 310 ASN A 325 1 16 HELIX 15 15 GLN A 326 TRP A 329 5 4 HELIX 16 16 GLU A 332 LYS A 342 1 11 HELIX 17 17 GLY B 14 HIS B 28 1 15 HELIX 18 18 ASN B 44 LEU B 52 5 9 HELIX 19 19 ASP B 65 ALA B 74 1 10 HELIX 20 20 HIS B 87 ASP B 94 1 8 HELIX 21 21 PRO B 95 PHE B 103 1 9 HELIX 22 22 PHE B 103 ASP B 117 1 15 HELIX 23 23 GLU B 127 GLY B 130 5 4 HELIX 24 24 LEU B 134 LEU B 138 5 5 HELIX 25 25 SER B 159 GLY B 180 1 22 HELIX 26 26 LYS B 200 ALA B 211 1 12 HELIX 27 27 THR B 230 GLY B 244 1 15 HELIX 28 28 ASN B 260 MET B 271 1 12 HELIX 29 29 ALA B 295 GLY B 303 1 9 HELIX 30 30 ASP B 310 ASN B 325 1 16 HELIX 31 31 GLN B 326 TRP B 329 5 4 HELIX 32 32 GLU B 332 LYS B 342 1 11
SHEET 1 A 7 VAL A 56 VAL A 60 0 SHEET 2 A 7 HIS A 32 ASP A 37 1 N VAL A 35 O GLU A 57 SHEET 3 A 7 ASN A 6 THR A 10 1 N ILE A 7 O THR A 34 SHEET 4 A 7 ALA A 78 HIS A 81 1 O VAL A 80 N ILE A 8 SHEET 5 A 7 ARG A 119 THR A 125 1 O HIS A 121 N ILE A 79 SHEET 6 A 7 ALA A 183 CYS A 188 1 O THR A 184 N HIS A 122 SHEET 7 A 7 THR A 249 ILE A 252 1 O TYR A 250 N ILE A 185 SHEET 1 B 2 ASN A 191 TYR A 192 0 SHEET 2 B 2 ILE A 228 HIS A 229 1 O ILE A 228 N TYR A 192 SHEET 1 C 2 LYS A 216 TYR A 218 0 SHEET 2 C 2 ASP A 279 VAL A 281 1 O VAL A 281 N LEU A 217 SHEET 1 D 2 VAL A 224 ASP A 226 0 SHEET 2 D 2 GLU A 257 ASN A 259 -1 O LYS A 258 N ARG A 225 SHEET 1 E 7 VAL B 56 VAL B 60 0 SHEET 2 E 7 HIS B 32 ASP B 37 1 N VAL B 35 O GLU B 57 SHEET 3 E 7 ASN B 6 THR B 10 1 N ILE B 7 O THR B 34 SHEET 4 E 7 ALA B 78 HIS B 81 1 O VAL B 80 N ILE B 8 SHEET 5 E 7 ARG B 119 THR B 125 1 O HIS B 121 N ILE B 79 SHEET 6 E 7 ALA B 183 CYS B 188 1 O SER B 186 N SER B 124 SHEET 7 E 7 THR B 249 ILE B 252 1 O TYR B 250 N ILE B 185 SHEET 1 F 2 ASN B 191 TYR B 192 0 SHEET 2 F 2 ILE B 228 HIS B 229 1 O ILE B 228 N TYR B 192 SHEET 1 G 3 LYS B 216 TYR B 218 0 SHEET 2 G 3 ASP B 279 VAL B 281 1 O VAL B 281 N LEU B 217 SHEET 3 G 3 VAL B 346 ILE B 347 -1 O ILE B 347 N HIS B 280 SHEET 1 H 2 VAL B 224 ASP B 226 0 SHEET 2 H 2 GLU B 257 ASN B 259 -1 O LYS B 258 N ARG B 225
SITE 1 AC1 19 HIS A 87 ASN A 88 GLU A 127 ASN A 190 SITE 2 AC1 19 GLU A 199 PHE A 201 ARG A 204 GLN A 205 SITE 3 AC1 19 LYS A 216 TYR A 218 ARG A 225 ASN A 260 SITE 4 AC1 19 ARG A 284 HIS A 287 TYR A 340 HOH A2615 SITE 5 AC1 19 HOH A2632 HOH A2635 HOH A2811 SITE 1 AC2 20 HIS B 87 ASN B 88 GLU B 127 ASN B 190 SITE 2 AC2 20 GLU B 199 PHE B 201 ARG B 204 GLN B 205 SITE 3 AC2 20 LYS B 216 LEU B 217 TYR B 218 ARG B 225 SITE 4 AC2 20 ASN B 260 ARG B 284 HIS B 287 TYR B 340 SITE 5 AC2 20 HOH B2626 HOH B2657 HOH B2687 HOH B2722 SITE 1 AC3 35 ALA A 13 GLY A 14 PHE A 15 ILE A 16 SITE 2 AC3 35 ASP A 37 LYS A 38 LEU A 39 THR A 40 SITE 3 AC3 35 ALA A 42 GLY A 43 GLY A 61 ASP A 62 SITE 4 AC3 35 ILE A 63 TYR A 82 ALA A 84 SER A 86 SITE 5 AC3 35 THR A 101 VAL A 123 SER A 124 TYR A 161 SITE 6 AC3 35 LYS A 165 CYS A 188 SER A 189 ASN A 190 SITE 7 AC3 35 ASN A 191 HOH A2575 HOH A2578 HOH A2579 SITE 8 AC3 35 HOH A2583 HOH A2587 HOH A2592 HOH A2599 SITE 9 AC3 35 HOH A2606 HOH A2660 HOH A2784 SITE 1 AC4 34 ALA B 13 GLY B 14 PHE B 15 ILE B 16 SITE 2 AC4 34 ASP B 37 LYS B 38 LEU B 39 THR B 40 SITE 3 AC4 34 ALA B 42 GLY B 43 GLY B 61 ASP B 62 SITE 4 AC4 34 ILE B 63 TYR B 82 ALA B 84 SER B 86 SITE 5 AC4 34 THR B 101 VAL B 123 SER B 124 THR B 125 SITE 6 AC4 34 TYR B 161 LYS B 165 CYS B 188 SER B 189 SITE 7 AC4 34 ASN B 191 HOH B2578 HOH B2580 HOH B2581 SITE 8 AC4 34 HOH B2583 HOH B2587 HOH B2594 HOH B2596 SITE 9 AC4 34 HOH B2635 HOH B2669
CRYST1 62.347 98.994 184.643 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016039 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010102 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005416 0.00000